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Items: 1 to 50 of 307

1.

Label-free Identification of Antibody-mediated Rejection in Cardiac Allograft Biopsies Using Infrared Spectroscopic Imaging.

Uraizee I, Varma VK, Sreedhar H, Gambacorta F, Nazeer S, Husain A, Walsh MJ.

Transplantation. 2018 Oct 1. doi: 10.1097/TP.0000000000002465. [Epub ahead of print]

PMID:
30278018
2.

High resolution annotation of zebrafish transcriptome using long-read sequencing.

Nudelman G, Frasca A, Kent B, Sadler KC, Sealfon SC, Walsh MJ, Zaslavsky E.

Genome Res. 2018 Sep;28(9):1415-1425. doi: 10.1101/gr.223586.117. Epub 2018 Jul 30.

PMID:
30061115
3.

Spatially constrained tandem bromodomain inhibition bolsters sustained repression of BRD4 transcriptional activity for TNBC cell growth.

Ren C, Zhang G, Han F, Fu S, Cao Y, Zhang F, Zhang Q, Meslamani J, Xu Y, Ji D, Cao L, Zhou Q, Cheung KL, Sharma R, Babault N, Yi Z, Zhang W, Walsh MJ, Zeng L, Zhou MM.

Proc Natl Acad Sci U S A. 2018 Jul 31;115(31):7949-7954. doi: 10.1073/pnas.1720000115. Epub 2018 Jul 16.

PMID:
30012592
4.

The evolution of size, shape, and surface morphology of gold nanorods.

Tong W, Katz-Boon H, Walsh MJ, Weyland M, Etheridge J, Funston AM.

Chem Commun (Camb). 2018 Mar 25;54(24):3022-3025. doi: 10.1039/c7cc08336j. Epub 2018 Mar 7.

PMID:
29511759
5.

Selecting optimal features from Fourier transform infrared spectroscopy for discrete-frequency imaging.

Mankar R, Walsh MJ, Bhargava R, Prasad S, Mayerich D.

Analyst. 2018 Feb 26;143(5):1147-1156. doi: 10.1039/c7an01888f.

PMID:
29404544
6.

CRISPR/Cas9-Mediated Genome Editing in Epstein-Barr Virus-Transformed Lymphoblastoid B-Cell Lines.

Jiang S, Wang LW, Walsh MJ, Trudeau SJ, Gerdt C, Zhao B, Gewurz BE.

Curr Protoc Mol Biol. 2018 Jan 16;121:31.12.1-31.12.23. doi: 10.1002/cpmb.51.

PMID:
29337376
7.

Predicting Fibrosis Progression in Renal Transplant Recipients Using Laser-Based Infrared Spectroscopic Imaging.

Varma VK, Kajdacsy-Balla A, Akkina S, Setty S, Walsh MJ.

Sci Rep. 2018 Jan 12;8(1):686. doi: 10.1038/s41598-017-19006-1.

8.

The challenge of herbicide resistance around the world: a current summary.

Peterson MA, Collavo A, Ovejero R, Shivrain V, Walsh MJ.

Pest Manag Sci. 2018 Oct;74(10):2246-2259. doi: 10.1002/ps.4821. Epub 2018 Feb 12. Review.

PMID:
29222931
9.

Opportunities and challenges for harvest weed seed control in global cropping systems.

Walsh MJ, Broster JC, Schwartz-Lazaro LM, Norsworthy JK, Davis AS, Tidemann BD, Beckie HJ, Lyon DJ, Soni N, Neve P, Bagavathiannan MV.

Pest Manag Sci. 2018 Oct;74(10):2235-2245. doi: 10.1002/ps.4802. Epub 2018 Feb 1. Review.

PMID:
29193725
10.

A Mechanism for Symmetry Breaking and Shape Control in Single-Crystal Gold Nanorods.

Walsh MJ, Tong W, Katz-Boon H, Mulvaney P, Etheridge J, Funston AM.

Acc Chem Res. 2017 Dec 19;50(12):2925-2935. doi: 10.1021/acs.accounts.7b00313. Epub 2017 Nov 16.

PMID:
29144733
11.

Medium-Term Outcomes After Implantation of Expanded Polytetrafluoroethylene Valved Conduit.

Ootaki Y, Welch AS, Walsh MJ, Quartermain MD, Williams DA, Ungerleider RM.

Ann Thorac Surg. 2018 Mar;105(3):843-850. doi: 10.1016/j.athoracsur.2017.07.013. Epub 2017 Nov 1.

PMID:
29100642
12.

The PRMT5/WDR77 complex regulates alternative splicing through ZNF326 in breast cancer.

Rengasamy M, Zhang F, Vashisht A, Song WM, Aguilo F, Sun Y, Li S, Zhang W, Zhang B, Wohlschlegel JA, Walsh MJ.

Nucleic Acids Res. 2017 Nov 2;45(19):11106-11120. doi: 10.1093/nar/gkx727.

13.

Infrared spectroscopic imaging: Label-free biochemical analysis of stroma and tissue fibrosis.

Nazeer SS, Sreedhar H, Varma VK, Martinez-Marin D, Massie C, Walsh MJ.

Int J Biochem Cell Biol. 2017 Nov;92:14-17. doi: 10.1016/j.biocel.2017.09.003. Epub 2017 Sep 6. Review.

14.

Accounting for tissue heterogeneity in infrared spectroscopic imaging for accurate diagnosis of thyroid carcinoma subtypes.

Martinez-Marin D, Sreedhar H, Varma VK, Eloy C, Sobrinho-Simões M, Kajdacsy-Balla A, Walsh MJ.

Vib Spectrosc. 2017 Jul;91:77-82. doi: 10.1016/j.vibspec.2016.09.014. Epub 2016 Sep 16.

15.

The N6-Methyladenosine RNA modification in pluripotency and reprogramming.

Aguilo F, Walsh MJ.

Curr Opin Genet Dev. 2017 Oct;46:77-82. doi: 10.1016/j.gde.2017.06.006. Epub 2017 Jul 3. Review.

16.

Landscape of Innovation for Cardiovascular Pharmaceuticals: From Basic Science to New Molecular Entities.

Beierlein JM, McNamee LM, Walsh MJ, Kaitin KI, DiMasi JA, Ledley FD.

Clin Ther. 2017 Jul;39(7):1409-1425.e20. doi: 10.1016/j.clinthera.2017.06.001. Epub 2017 Jun 23.

PMID:
28652015
17.

THAP1: Role in Mouse Embryonic Stem Cell Survival and Differentiation.

Aguilo F, Zakirova Z, Nolan K, Wagner R, Sharma R, Hogan M, Wei C, Sun Y, Walsh MJ, Kelley K, Zhang W, Ozelius LJ, Gonzalez-Alegre P, Zwaka TP, Ehrlich ME.

Stem Cell Reports. 2017 Jul 11;9(1):92-107. doi: 10.1016/j.stemcr.2017.04.032. Epub 2017 Jun 1.

18.

CRISPR/Cas9 Screens Reveal Epstein-Barr Virus-Transformed B Cell Host Dependency Factors.

Ma Y, Walsh MJ, Bernhardt K, Ashbaugh CW, Trudeau SJ, Ashbaugh IY, Jiang S, Jiang C, Zhao B, Root DE, Doench JG, Gewurz BE.

Cell Host Microbe. 2017 May 10;21(5):580-591.e7. doi: 10.1016/j.chom.2017.04.005.

19.

Timelines of translational science: From technology initiation to FDA approval.

McNamee LM, Walsh MJ, Ledley FD.

PLoS One. 2017 May 8;12(5):e0177371. doi: 10.1371/journal.pone.0177371. eCollection 2017.

20.

Infrared spectroscopic imaging: a label free approach for the detection of amyloidosis in human tissue biopsies.

Martinez-Marin D, Sreedhar H, Walsh MJ, Picken MM.

Amyloid. 2017 Mar;24(sup1):163-164. doi: 10.1080/13506129.2017.1286581. No abstract available.

PMID:
28434363
21.

Krüppel-like factor 4 (KLF4) regulates the miR-183~96~182 cluster under physiologic and pathologic conditions.

Segura MF, Jubierre L, Li S, Soriano A, Koetz L, Gaziel-Sovran A, Masanas M, Kleffman K, Dankert JF, Walsh MJ, Hernando E.

Oncotarget. 2017 Apr 18;8(16):26298-26311. doi: 10.18632/oncotarget.15459.

22.

Counseling Practices for Fetal Hypoplastic Left Heart Syndrome.

Walsh MJ, Verghese GR, Ferguson ME, Fino NF, Goldberg DJ, Owens ST, Pinto N, Zyblewski SC, Quartermain MD.

Pediatr Cardiol. 2017 Jun;38(5):946-958. doi: 10.1007/s00246-017-1601-1. Epub 2017 Mar 27.

PMID:
28345115
23.

BET N-terminal bromodomain inhibition selectively blocks Th17 cell differentiation and ameliorates colitis in mice.

Cheung K, Lu G, Sharma R, Vincek A, Zhang R, Plotnikov AN, Zhang F, Zhang Q, Ju Y, Hu Y, Zhao L, Han X, Meslamani J, Xu F, Jaganathan A, Shen T, Zhu H, Rusinova E, Zeng L, Zhou J, Yang J, Peng L, Ohlmeyer M, Walsh MJ, Zhang DY, Xiong H, Zhou MM.

Proc Natl Acad Sci U S A. 2017 Mar 14;114(11):2952-2957. doi: 10.1073/pnas.1615601114. Epub 2017 Mar 6.

24.

Distinct Roles of Brd2 and Brd4 in Potentiating the Transcriptional Program for Th17 Cell Differentiation.

Cheung KL, Zhang F, Jaganathan A, Sharma R, Zhang Q, Konuma T, Shen T, Lee JY, Ren C, Chen CH, Lu G, Olson MR, Zhang W, Kaplan MH, Littman DR, Walsh MJ, Xiong H, Zeng L, Zhou MM.

Mol Cell. 2017 Mar 16;65(6):1068-1080.e5. doi: 10.1016/j.molcel.2016.12.022. Epub 2017 Mar 3.

25.

Why was resistance to shorter-acting pre-emergence herbicides slower to evolve?

Somerville GJ, Powles SB, Walsh MJ, Renton M.

Pest Manag Sci. 2017 May;73(5):844-851. doi: 10.1002/ps.4509. Epub 2017 Feb 20.

PMID:
28019070
26.

High prevalence of HIV, chlamydia and gonorrhoea among men who have sex with men and transgender women attending trusted community centres in Abuja and Lagos, Nigeria.

Keshinro B, Crowell TA, Nowak RG, Adebajo S, Peel S, Gaydos CA, Rodriguez-Hart C, Baral SD, Walsh MJ, Njoku OS, Odeyemi S, Ngo-Ndomb T, Blattner WA, Robb ML, Charurat ME, Ake J; TRUST/RV368 Study Group.

J Int AIDS Soc. 2016 Dec 7;19(1):21270. doi: 10.7448/IAS.19.1.21270. eCollection 2016.

27.

Identification of novel prognostic indicators for triple-negative breast cancer patients through integrative analysis of cancer genomics data and protein interactome data.

Zhang F, Ren C, Zhao H, Yang L, Su F, Zhou MM, Han J, Sobie EA, Walsh MJ.

Oncotarget. 2016 Nov 1;7(44):71620-71634. doi: 10.18632/oncotarget.12287.

28.

A network medicine approach to build a comprehensive atlas for the prognosis of human cancer.

Zhang F, Ren C, Lau KK, Zheng Z, Lu G, Yi Z, Zhao Y, Su F, Zhang S, Zhang B, Sobie EA, Zhang W, Walsh MJ.

Brief Bioinform. 2016 Nov;17(6):1044-1059. Epub 2016 Aug 24.

29.

Modulation of long noncoding RNAs by risk SNPs underlying genetic predispositions to prostate cancer.

Guo H, Ahmed M, Zhang F, Yao CQ, Li S, Liang Y, Hua J, Soares F, Sun Y, Langstein J, Li Y, Poon C, Bailey SD, Desai K, Fei T, Li Q, Sendorek DH, Fraser M, Prensner JR, Pugh TJ, Pomerantz M, Bristow RG, Lupien M, Feng FY, Boutros PC, Freedman ML, Walsh MJ, He HH.

Nat Genet. 2016 Oct;48(10):1142-50. doi: 10.1038/ng.3637. Epub 2016 Aug 15.

PMID:
27526323
30.

RBM5-AS1 Is Critical for Self-Renewal of Colon Cancer Stem-like Cells.

Di Cecilia S, Zhang F, Sancho A, Li S, Aguiló F, Sun Y, Rengasamy M, Zhang W, Del Vecchio L, Salvatore F, Walsh MJ.

Cancer Res. 2016 Oct 1;76(19):5615-5627. Epub 2016 Aug 12.

31.

ZNF217/ZFP217 Meets Chromatin and RNA.

Lee DF, Walsh MJ, Aguiló F.

Trends Biochem Sci. 2016 Dec;41(12):986-988. doi: 10.1016/j.tibs.2016.07.013. Epub 2016 Aug 9.

32.

CRISPR/Cas9 Screens Reveal Requirements for Host Cell Sulfation and Fucosylation in Bacterial Type III Secretion System-Mediated Cytotoxicity.

Blondel CJ, Park JS, Hubbard TP, Pacheco AR, Kuehl CJ, Walsh MJ, Davis BM, Gewurz BE, Doench JG, Waldor MK.

Cell Host Microbe. 2016 Aug 10;20(2):226-37. doi: 10.1016/j.chom.2016.06.010. Epub 2016 Jul 21.

33.

Recurrent selection with reduced 2,4-D amine doses results in the rapid evolution of 2,4-D herbicide resistance in wild radish (Raphanus raphanistrum L.).

Ashworth MB, Walsh MJ, Flower KC, Powles SB.

Pest Manag Sci. 2016 Nov;72(11):2091-2098. doi: 10.1002/ps.4364. Epub 2016 Aug 30.

PMID:
27442188
34.

Distinct distributions of genomic features of the 5' and 3' partners of coding somatic cancer gene fusions: arising mechanisms and functional implications.

Zhao Y, Song WM, Zhang F, Zhou MM, Zhang W, Walsh MJ, Zhang B.

Oncotarget. 2016 Jul 20;8(40):66769-66783. doi: 10.18632/oncotarget.10734. eCollection 2017 Sep 15.

35.

Infrared spectroscopic imaging detects chemical modifications in liver fibrosis due to diabetes and disease.

Sreedhar H, Varma VK, Gambacorta FV, Guzman G, Walsh MJ.

Biomed Opt Express. 2016 May 27;7(6):2419-24. doi: 10.1364/BOE.7.002419. eCollection 2016 Jun 1.

36.

The C9orf72 protein interacts with Rab1a and the ULK1 complex to regulate initiation of autophagy.

Webster CP, Smith EF, Bauer CS, Moller A, Hautbergue GM, Ferraiuolo L, Myszczynska MA, Higginbottom A, Walsh MJ, Whitworth AJ, Kaspar BK, Meyer K, Shaw PJ, Grierson AJ, De Vos KJ.

EMBO J. 2016 Aug 1;35(15):1656-76. doi: 10.15252/embj.201694401. Epub 2016 Jun 22.

37.

Structure-Guided Discovery of Selective Antagonists for the Chromodomain of Polycomb Repressive Protein CBX7.

Ren C, Smith SG, Yap K, Li S, Li J, Mezei M, Rodriguez Y, Vincek A, Aguilo F, Walsh MJ, Zhou MM.

ACS Med Chem Lett. 2016 Feb 29;7(6):601-5. doi: 10.1021/acsmedchemlett.6b00042. eCollection 2016 Jun 9.

38.

The Authors Reply.

Varma VK, Kajdacsy-Balla A, Akkina SK, Setty S, Walsh MJ.

Kidney Int. 2016 Jul;90(1):226. doi: 10.1016/j.kint.2016.03.015. No abstract available.

PMID:
27312453
39.

Directional selection for flowering time leads to adaptive evolution in Raphanus raphanistrum (Wild radish).

Ashworth MB, Walsh MJ, Flower KC, Vila-Aiub MM, Powles SB.

Evol Appl. 2016 Feb 17;9(4):619-29. doi: 10.1111/eva.12350. eCollection 2016 Apr.

40.

Using Raman spectroscopy to characterize biological materials.

Butler HJ, Ashton L, Bird B, Cinque G, Curtis K, Dorney J, Esmonde-White K, Fullwood NJ, Gardner B, Martin-Hirsch PL, Walsh MJ, McAinsh MR, Stone N, Martin FL.

Nat Protoc. 2016 Apr;11(4):664-87. doi: 10.1038/nprot.2016.036. Epub 2016 Mar 10.

PMID:
26963630
41.

A label-free approach by infrared spectroscopic imaging for interrogating the biochemistry of diabetic nephropathy progression.

Varma VK, Kajdacsy-Balla A, Akkina SK, Setty S, Walsh MJ.

Kidney Int. 2016 May;89(5):1153-1159. doi: 10.1016/j.kint.2015.11.027. Epub 2016 Feb 2.

42.

UHRF1 regulation of Dnmt1 is required for pre-gastrula zebrafish development.

Kent B, Magnani E, Walsh MJ, Sadler KC.

Dev Biol. 2016 Apr 1;412(1):99-113. doi: 10.1016/j.ydbio.2016.01.036. Epub 2016 Feb 3.

43.

Deposition of 5-Methylcytosine on Enhancer RNAs Enables the Coactivator Function of PGC-1α.

Aguilo F, Li S, Balasubramaniyan N, Sancho A, Benko S, Zhang F, Vashisht A, Rengasamy M, Andino B, Chen CH, Zhou F, Qian C, Zhou MM, Wohlschlegel JA, Zhang W, Suchy FJ, Walsh MJ.

Cell Rep. 2016 Jan 26;14(3):479-492. doi: 10.1016/j.celrep.2015.12.043. Epub 2016 Jan 7.

44.

Coordination of m(6)A mRNA Methylation and Gene Transcription by ZFP217 Regulates Pluripotency and Reprogramming.

Aguilo F, Zhang F, Sancho A, Fidalgo M, Di Cecilia S, Vashisht A, Lee DF, Chen CH, Rengasamy M, Andino B, Jahouh F, Roman A, Krig SR, Wang R, Zhang W, Wohlschlegel JA, Wang J, Walsh MJ.

Cell Stem Cell. 2015 Dec 3;17(6):689-704. doi: 10.1016/j.stem.2015.09.005. Epub 2015 Oct 29.

45.

Cysteine Enhances Bioavailability of Copper to Marine Phytoplankton.

Walsh MJ, Goodnow SD, Vezeau GE, Richter LV, Ahner BA.

Environ Sci Technol. 2015 Oct 20;49(20):12145-52. doi: 10.1021/acs.est.5b02112. Epub 2015 Sep 30.

PMID:
26420592
46.

Patterns of Innovation in Alzheimer's Disease Drug Development: A Strategic Assessment Based on Technological Maturity.

Beierlein JM, McNamee LM, Walsh MJ, Ledley FD.

Clin Ther. 2015 Aug;37(8):1643-51.e3. doi: 10.1016/j.clinthera.2015.07.003. Epub 2015 Aug 1.

47.

Long Non-coding RNA ANRIL and Polycomb in Human Cancers and Cardiovascular Disease.

Aguilo F, Di Cecilia S, Walsh MJ.

Curr Top Microbiol Immunol. 2016;394:29-39. doi: 10.1007/82_2015_455. Review.

48.

Stain-less staining for computed histopathology.

Mayerich D, Walsh MJ, Kadjacsy-Balla A, Ray PS, Hewitt SM, Bhargava R.

Technology (Singap World Sci). 2015 Mar;3(1):27-31.

49.

TRAF1 Coordinates Polyubiquitin Signaling to Enhance Epstein-Barr Virus LMP1-Mediated Growth and Survival Pathway Activation.

Greenfeld H, Takasaki K, Walsh MJ, Ersing I, Bernhardt K, Ma Y, Fu B, Ashbaugh CW, Cabo J, Mollo SB, Zhou H, Li S, Gewurz BE.

PLoS Pathog. 2015 May 21;11(5):e1004890. doi: 10.1371/journal.ppat.1004890. eCollection 2015 May.

50.

Examining the photoprotection hypothesis for adaxial foliar anthocyanin accumulation by revisiting comparisons of green- and red-leafed varieties of coleus (Solenostemon scutellarioides).

Logan BA, Stafstrom WC, Walsh MJ, Reblin JS, Gould KS.

Photosynth Res. 2015 Jun;124(3):267-74. doi: 10.1007/s11120-015-0130-0. Epub 2015 Apr 11.

PMID:
25862643

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