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Items: 39

1.

Pre-diagnostic dynamic HPV16 IgG seropositivity and risk of oropharyngeal cancer: Methodologic issues.

Anderson KS, Mork J, Langseth H, Wallstrom G.

Oral Oncol. 2018 May;80:93. doi: 10.1016/j.oraloncology.2018.02.013. Epub 2018 Mar 30. No abstract available.

PMID:
29606498
2.

Pre-diagnostic dynamic HPV16 IgG seropositivity and risk of oropharyngeal cancer.

Anderson KS, Wallstrom G, Langseth H, Posner M, Cheng JN, Alam R, Chowell D, Furre IE, Mork J.

Oral Oncol. 2017 Oct;73:132-137. doi: 10.1016/j.oraloncology.2017.08.014. Epub 2017 Sep 1.

PMID:
28939065
3.

Automatic Identification and Quantification of Extra-Well Fluorescence in Microarray Images.

Rivera R, Wang J, Yu X, Demirkan G, Hopper M, Bian X, Tahsin T, Magee DM, Qiu J, LaBaer J, Wallstrom G.

J Proteome Res. 2017 Nov 3;16(11):3969-3977. doi: 10.1021/acs.jproteome.7b00267. Epub 2017 Oct 10.

PMID:
28938071
4.

Autoantibody biomarkers for the detection of serous ovarian cancer.

Katchman BA, Chowell D, Wallstrom G, Vitonis AF, LaBaer J, Cramer DW, Anderson KS.

Gynecol Oncol. 2017 Jul;146(1):129-136. doi: 10.1016/j.ygyno.2017.04.005. Epub 2017 Apr 18.

5.

Developing Human Radiation Biodosimetry Models: Testing Cross-Species Conversion Approaches Using an Ex Vivo Model System.

Park JG, Paul S, Briones N, Zeng J, Gillis K, Wallstrom G, LaBaer J, Amundson SA.

Radiat Res. 2017 Jun;187(6):708-721. doi: 10.1667/RR14655.1. Epub 2017 Mar 22.

6.

Identification of Antibody Targets for Tuberculosis Serology using High-Density Nucleic Acid Programmable Protein Arrays.

Song L, Wallstrom G, Yu X, Hopper M, Van Duine J, Steel J, Park J, Wiktor P, Kahn P, Brunner A, Wilson D, Jenny-Avital ER, Qiu J, Labaer J, Magee DM, Achkar JM.

Mol Cell Proteomics. 2017 Apr;16(4 suppl 1):S277-S289. doi: 10.1074/mcp.M116.065953. Epub 2017 Feb 21.

7.

Identification of Antibody Against SNRPB, Small Nuclear Ribonucleoprotein-Associated Proteins B and B', as an Autoantibody Marker in Crohn's Disease using an Immunoproteomics Approach.

Wang H, Demirkan G, Bian X, Wallstrom G, Barker K, Karthikeyan K, Tang Y, Pasha SF, Leighton JA, Qiu J, LaBaer J.

J Crohns Colitis. 2017 Jul 1;11(7):848-856. doi: 10.1093/ecco-jcc/jjx019.

PMID:
28204086
8.

Tracking the Antibody Immunome in Type 1 Diabetes Using Protein Arrays.

Bian X, Wasserfall C, Wallstrom G, Wang J, Wang H, Barker K, Schatz D, Atkinson M, Qiu J, LaBaer J.

J Proteome Res. 2017 Jan 6;16(1):195-203. doi: 10.1021/acs.jproteome.6b00354. Epub 2016 Oct 17.

PMID:
27690455
9.

Proteomic mapping of p53 immunogenicity in pancreatic, ovarian, and breast cancers.

Katchman BA, Barderas R, Alam R, Chowell D, Field MS, Esserman LJ, Wallstrom G, LaBaer J, Cramer DW, Hollingsworth MA, Anderson KS.

Proteomics Clin Appl. 2016 Jul;10(7):720-31. doi: 10.1002/prca.201500096. Epub 2016 May 17.

10.

A high-precision rule-based extraction system for expanding geospatial metadata in GenBank records.

Tahsin T, Weissenbacher D, Rivera R, Beard R, Firago M, Wallstrom G, Scotch M, Gonzalez G.

J Am Med Inform Assoc. 2016 Sep;23(5):934-41. doi: 10.1093/jamia/ocv172. Epub 2016 Jan 17.

11.

Comparative Study of Autoantibody Responses between Lung Adenocarcinoma and Benign Pulmonary Nodules.

Wang J, Shivakumar S, Barker K, Tang Y, Wallstrom G, Park JG, Tsay JC, Pass HI, Rom WN, LaBaer J, Qiu J.

J Thorac Oncol. 2016 Mar;11(3):334-45. doi: 10.1016/j.jtho.2015.11.011. Epub 2016 Feb 16.

12.

Immunoproteomic Profiling of Antiviral Antibodies in New-Onset Type 1 Diabetes Using Protein Arrays.

Bian X, Wallstrom G, Davis A, Wang J, Park J, Throop A, Steel J, Yu X, Wasserfall C, Schatz D, Atkinson M, Qiu J, LaBaer J.

Diabetes. 2016 Jan;65(1):285-96. doi: 10.2337/db15-0179. Epub 2015 Oct 8.

13.

Plasma Autoantibodies Associated with Basal-like Breast Cancers.

Wang J, Figueroa JD, Wallstrom G, Barker K, Park JG, Demirkan G, Lissowska J, Anderson KS, Qiu J, LaBaer J.

Cancer Epidemiol Biomarkers Prev. 2015 Sep;24(9):1332-40. doi: 10.1158/1055-9965.EPI-15-0047. Epub 2015 Jun 12.

14.

Natural language processing methods for enhancing geographic metadata for phylogeography of zoonotic viruses.

Tahsin T, Beard R, Rivera R, Lauder R, Wallstrom G, Scotch M, Gonzalez G.

AMIA Jt Summits Transl Sci Proc. 2014 Apr 7;2014:102-11. eCollection 2014.

15.

Autoantibody signature for the serologic detection of ovarian cancer.

Anderson KS, Cramer DW, Sibani S, Wallstrom G, Wong J, Park J, Qiu J, Vitonis A, LaBaer J.

J Proteome Res. 2015 Jan 2;14(1):578-86. doi: 10.1021/pr500908n. Epub 2014 Nov 17.

16.

Mycobacterial membrane vesicles administered systemically in mice induce a protective immune response to surface compartments of Mycobacterium tuberculosis.

Prados-Rosales R, CarreƱo LJ, Batista-Gonzalez A, Baena A, Venkataswamy MM, Xu J, Yu X, Wallstrom G, Magee DM, LaBaer J, Achkar JM, Jacobs WR Jr, Chan J, Porcelli SA, Casadevall A.

MBio. 2014 Sep 30;5(5):e01921-14. doi: 10.1128/mBio.01921-14.

17.

Integrated genomic and epigenomic analysis of breast cancer brain metastasis.

Salhia B, Kiefer J, Ross JT, Metapally R, Martinez RA, Johnson KN, DiPerna DM, Paquette KM, Jung S, Nasser S, Wallstrom G, Tembe W, Baker A, Carpten J, Resau J, Ryken T, Sibenaller Z, Petricoin EF, Liotta LA, Ramanathan RK, Berens ME, Tran NL.

PLoS One. 2014 Jan 29;9(1):e85448. doi: 10.1371/journal.pone.0085448. eCollection 2014.

18.

Serological autoantibody profiling of type 1 diabetes by protein arrays.

Miersch S, Bian X, Wallstrom G, Sibani S, Logvinenko T, Wasserfall CH, Schatz D, Atkinson M, Qiu J, LaBaer J.

J Proteomics. 2013 Dec 6;94:486-96. doi: 10.1016/j.jprot.2013.10.018. Epub 2013 Oct 20.

PMID:
24148850
19.

Reduced incidence of Prevotella and other fermenters in intestinal microflora of autistic children.

Kang DW, Park JG, Ilhan ZE, Wallstrom G, Labaer J, Adams JB, Krajmalnik-Brown R.

PLoS One. 2013 Jul 3;8(7):e68322. doi: 10.1371/journal.pone.0068322. Print 2013.

20.

Quantifying antibody binding on protein microarrays using microarray nonlinear calibration.

Yu X, Wallstrom G, Magee DM, Qiu J, Mendoza DE, Wang J, Bian X, Graves M, LaBaer J.

Biotechniques. 2013 May;54(5):257-64. doi: 10.2144/000114028.

21.

Biomarker discovery for heterogeneous diseases.

Wallstrom G, Anderson KS, LaBaer J.

Cancer Epidemiol Biomarkers Prev. 2013 May;22(5):747-55. doi: 10.1158/1055-9965.EPI-12-1236. Epub 2013 Mar 5.

22.

Context-sensitive markov models for peptide scoring and identification from tandem mass spectrometry.

Grover H, Wallstrom G, Wu CC, Gopalakrishnan V.

OMICS. 2013 Feb;17(2):94-105. doi: 10.1089/omi.2012.0073. Epub 2013 Jan 5.

23.

A versatile protein microarray platform enabling antibody profiling against denatured proteins.

Wang J, Barker K, Steel J, Park J, Saul J, Festa F, Wallstrom G, Yu X, Bian X, Anderson KS, Figueroa JD, LaBaer J, Qiu J.

Proteomics Clin Appl. 2013 Jun;7(5-6):378-83. doi: 10.1002/prca.201200062. Epub 2013 May 17.

24.

Protein microarray signature of autoantibody biomarkers for the early detection of breast cancer.

Anderson KS, Sibani S, Wallstrom G, Qiu J, Mendoza EA, Raphael J, Hainsworth E, Montor WR, Wong J, Park JG, Lokko N, Logvinenko T, Ramachandran N, Godwin AK, Marks J, Engstrom P, Labaer J.

J Proteome Res. 2011 Jan 7;10(1):85-96. doi: 10.1021/pr100686b. Epub 2010 Nov 23.

25.

High regularities in eye-movement patterns reveal the dynamics of the visual working memory allocation mechanism.

Kong X, Schunn CD, Wallstrom GL.

Cogn Sci. 2010 Mar;34(2):322-37. doi: 10.1111/j.1551-6709.2009.01075.x. Epub 2009 Oct 27.

26.

Measuring the effect of commuting on the performance of the Bayesian Aerosol Release Detector.

Cami A, Wallstrom GL, Hogan WR.

BMC Med Inform Decis Mak. 2009 Nov 3;9 Suppl 1:S7. doi: 10.1186/1472-6947-9-S1-S7.

27.

Mining aggregates of over-the-counter products for syndromic surveillance.

Cami A, Wallstrom GL, Fowlkes AL, Panozzo CA, Hogan WR.

Pattern Recognit Lett. 2009 Feb 1;30(3):255-266.

28.

Detection of disease outbreaks by the use of oral manifestations.

Torres-Urquidy MH, Wallstrom G, Schleyer TK.

J Dent Res. 2009 Jan;88(1):89-94. doi: 10.1177/0022034508327546.

29.
30.

Bayesian prediction of an epidemic curve.

Jiang X, Wallstrom G, Cooper GF, Wagner MM.

J Biomed Inform. 2009 Feb;42(1):90-9. doi: 10.1016/j.jbi.2008.05.013. Epub 2008 Jun 13.

31.

An Implementation of Bayesian Adaptive Regression Splines (BARS) in C with S and R Wrappers.

Wallstrom G, Liebner J, Kass RE.

J Stat Softw. 2008 Jun 1;26(1):1-21.

32.
33.

Unsupervised clustering of over-the-counter healthcare products into product categories.

Wallstrom GL, Hogan WR.

J Biomed Inform. 2007 Dec;40(6):642-8. Epub 2007 Apr 3.

34.

Issue a boil-water advisory or wait for definitive information? A decision analysis.

Wagner MM, Wallstrom GL, Onisko A.

AMIA Annu Symp Proc. 2005:774-8.

36.
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38.

Integration of association statistics over genomic regions using Bayesian adaptive regression splines.

Zhang X, Roeder K, Wallstrom G, Devlin B.

Hum Genomics. 2003 Nov;1(1):20-9.

39.

Automatic correction of ocular artifacts in the EEG: a comparison of regression-based and component-based methods.

Wallstrom GL, Kass RE, Miller A, Cohn JF, Fox NA.

Int J Psychophysiol. 2004 Jul;53(2):105-19.

PMID:
15210288

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