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Items: 1 to 50 of 246

1.

Multiple direct interactions of TBP with the MYC oncoprotein.

Wei Y, Resetca D, Li Z, Johansson-Åkhe I, Ahlner A, Helander S, Wallenhammar A, Morad V, Raught B, Wallner B, Kokubo T, Tong Y, Penn LZ, Sunnerhagen M.

Nat Struct Mol Biol. 2019 Nov 4. doi: 10.1038/s41594-019-0321-z. [Epub ahead of print]

PMID:
31686052
2.

Low incidence of avalanche victims in cardiac arrest calls for multi-centre studies and registries for the validation of resuscitation guidelines.

Brugger H, Strapazzon G, Wallner B, Paal P.

Resuscitation. 2019 Nov;144:195-196. doi: 10.1016/j.resuscitation.2019.07.039. Epub 2019 Sep 10. No abstract available.

PMID:
31518614
3.

Z-line alterations and gastroesophageal reflux: an endoscopic population-based prospective cohort study.

Wallner B, Björ O, Andreasson A, Vieth M, Schmidt PT, Hellström PM, Forsberg A, Talley NJ, Agreus L.

Scand J Gastroenterol. 2019 Sep;54(9):1065-1069. doi: 10.1080/00365521.2019.1656775. Epub 2019 Aug 27.

PMID:
31453726
4.

Population Genetic Analysis of the Estonian Native Horse Suggests Diverse and Distinct Genetics, Ancient Origin and Contribution from Unique Patrilines.

Castaneda C, Juras R, Khanshour A, Randlaht I, Wallner B, Rigler D, Lindgren G, Raudsepp T, Cothran EG.

Genes (Basel). 2019 Aug 20;10(8). pii: E629. doi: 10.3390/genes10080629.

5.

rawMSA: End-to-end Deep Learning using raw Multiple Sequence Alignments.

Mirabello C, Wallner B.

PLoS One. 2019 Aug 15;14(8):e0220182. doi: 10.1371/journal.pone.0220182. eCollection 2019.

6.

Estimation of model accuracy in CASP13.

Cheng J, Choe MH, Elofsson A, Han KS, Hou J, Maghrabi AHA, McGuffin LJ, Menéndez-Hurtado D, Olechnovič K, Schwede T, Studer G, Uziela K, Venclovas Č, Wallner B.

Proteins. 2019 Jul 2. doi: 10.1002/prot.25767. [Epub ahead of print]

PMID:
31265154
7.

Extrication Times During Avalanche Companion Rescue: A Randomized Single-Blinded Manikin Study.

Wallner B, Moroder L, Brandt A, Mair P, Erhart S, Bachler M, Putzer G, Turner R, Strapazzon G, Falk M, Brugger H.

High Alt Med Biol. 2019 Sep;20(3):245-250. doi: 10.1089/ham.2019.0021. Epub 2019 Jul 2.

PMID:
31264903
8.

On the sunny side of (new) life: Effect of sunshine duration on age at first reproduction in Japanese macaques (Macaca fuscata).

Pflüger LS, Pink KE, Böck A, Huffman MA, Wallner B.

Am J Primatol. 2019 Jul;81(7):e23019. doi: 10.1002/ajp.23019. Epub 2019 Jun 27.

9.

A First Y-Chromosomal Haplotype Network to Investigate Male-Driven Population Dynamics in Domestic and Wild Bactrian Camels.

Felkel S, Wallner B, Chuluunbat B, Yadamsuren A, Faye B, Brem G, Walzer C, Burger PA.

Front Genet. 2019 May 21;10:423. doi: 10.3389/fgene.2019.00423. eCollection 2019.

10.

Chinese Mongolian horses may retain early domestic male genetic lineages yet to be discovered.

Han H, Wallner B, Rigler D, MacHugh DE, Manglai D, Hill EW.

Anim Genet. 2019 Aug;50(4):399-402. doi: 10.1111/age.12780. Epub 2019 May 9.

PMID:
31073991
11.

Prediabetes and diabetes in relation to risk of gastric adenocarcinoma.

Zheng J, Rutegård M, Santoni G, Wallner B, Johansson I, Sund M, Xie SH, Lagergren J.

Br J Cancer. 2019 Jun;120(12):1147-1152. doi: 10.1038/s41416-019-0470-1. Epub 2019 May 7.

PMID:
31061455
12.

Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series.

Fages A, Hanghøj K, Khan N, Gaunitz C, Seguin-Orlando A, Leonardi M, McCrory Constantz C, Gamba C, Al-Rasheid KAS, Albizuri S, Alfarhan AH, Allentoft M, Alquraishi S, Anthony D, Baimukhanov N, Barrett JH, Bayarsaikhan J, Benecke N, Bernáldez-Sánchez E, Berrocal-Rangel L, Biglari F, Boessenkool S, Boldgiv B, Brem G, Brown D, Burger J, Crubézy E, Daugnora L, Davoudi H, de Barros Damgaard P, de Los Ángeles de Chorro Y de Villa-Ceballos M, Deschler-Erb S, Detry C, Dill N, do Mar Oom M, Dohr A, Ellingvåg S, Erdenebaatar D, Fathi H, Felkel S, Fernández-Rodríguez C, García-Viñas E, Germonpré M, Granado JD, Hallsson JH, Hemmer H, Hofreiter M, Kasparov A, Khasanov M, Khazaeli R, Kosintsev P, Kristiansen K, Kubatbek T, Kuderna L, Kuznetsov P, Laleh H, Leonard JA, Lhuillier J, Liesau von Lettow-Vorbeck C, Logvin A, Lõugas L, Ludwig A, Luis C, Arruda AM, Marques-Bonet T, Matoso Silva R, Merz V, Mijiddorj E, Miller BK, Monchalov O, Mohaseb FA, Morales A, Nieto-Espinet A, Nistelberger H, Onar V, Pálsdóttir AH, Pitulko V, Pitskhelauri K, Pruvost M, Rajic Sikanjic P, Rapan Papeša A, Roslyakova N, Sardari A, Sauer E, Schafberg R, Scheu A, Schibler J, Schlumbaum A, Serrand N, Serres-Armero A, Shapiro B, Sheikhi Seno S, Shevnina I, Shidrang S, Southon J, Star B, Sykes N, Taheri K, Taylor W, Teegen WR, Trbojević Vukičević T, Trixl S, Tumen D, Undrakhbold S, Usmanova E, Vahdati A, Valenzuela-Lamas S, Viegas C, Wallner B, Weinstock J, Zaibert V, Clavel B, Lepetz S, Mashkour M, Helgason A, Stefánsson K, Barrey E, Willerslev E, Outram AK, Librado P, Orlando L.

Cell. 2019 May 30;177(6):1419-1435.e31. doi: 10.1016/j.cell.2019.03.049. Epub 2019 May 2.

13.

The horse Y chromosome as an informative marker for tracing sire lines.

Felkel S, Vogl C, Rigler D, Dobretsberger V, Chowdhary BP, Distl O, Fries R, Jagannathan V, Janečka JE, Leeb T, Lindgren G, McCue M, Metzger J, Neuditschko M, Rattei T, Raudsepp T, Rieder S, Rubin CJ, Schaefer R, Schlötterer C, Thaller G, Tetens J, Velie B, Brem G, Wallner B.

Sci Rep. 2019 Apr 15;9(1):6095. doi: 10.1038/s41598-019-42640-w.

14.

Predicting protein-peptide interaction sites using distant protein complexes as structural templates.

Johansson-Åkhe I, Mirabello C, Wallner B.

Sci Rep. 2019 Mar 12;9(1):4267. doi: 10.1038/s41598-019-38498-7.

15.

Protein measurements in venous plasma, earlobe capillary plasma and in plasma stored on filter paper.

Siart B, de Oliveira FMS, Shen Q, Björkesten J, Pekar T, Steinborn R, Nimmerichter A, Kamali-Moghaddam M, Wallner B.

Anal Biochem. 2019 Feb 1;566:146-150. doi: 10.1016/j.ab.2018.11.016. Epub 2018 Nov 22.

PMID:
30472219
16.

Topology independent structural matching discovers novel templates for protein interfaces.

Mirabello C, Wallner B.

Bioinformatics. 2018 Sep 1;34(17):i787-i794. doi: 10.1093/bioinformatics/bty587.

PMID:
30423106
17.

Saliva cortisol responses to altered plasma PUFA patterns in guinea pigs.

Nemeth M, Millesi E, Wagner KH, Wallner B.

Br J Nutr. 2018 Dec;120(11):1240-1251. doi: 10.1017/S0007114518002660. Epub 2018 Oct 16.

PMID:
30322410
18.

Lightning accidents in the Austrian alps - a 10-year retrospective nationwide analysis.

Ströhle M, Wallner B, Lanthaler M, Rauch S, Brugger H, Paal P.

Scand J Trauma Resusc Emerg Med. 2018 Sep 10;26(1):74. doi: 10.1186/s13049-018-0543-9.

19.

Biaryl sulfonamide motifs up- or down-regulate ion channel activity by activating voltage sensors.

Liin SI, Lund PE, Larsson JE, Brask J, Wallner B, Elinder F.

J Gen Physiol. 2018 Aug 6;150(8):1215-1230. doi: 10.1085/jgp.201711942. Epub 2018 Jul 12.

20.

An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12.

Keasar C, McGuffin LJ, Wallner B, Chopra G, Adhikari B, Bhattacharya D, Blake L, Bortot LO, Cao R, Dhanasekaran BK, Dimas I, Faccioli RA, Faraggi E, Ganzynkowicz R, Ghosh S, Ghosh S, Giełdoń A, Golon L, He Y, Heo L, Hou J, Khan M, Khatib F, Khoury GA, Kieslich C, Kim DE, Krupa P, Lee GR, Li H, Li J, Lipska A, Liwo A, Maghrabi AHA, Mirdita M, Mirzaei S, Mozolewska MA, Onel M, Ovchinnikov S, Shah A, Shah U, Sidi T, Sieradzan AK, Ślusarz M, Ślusarz R, Smadbeck J, Tamamis P, Trieber N, Wirecki T, Yin Y, Zhang Y, Bacardit J, Baranowski M, Chapman N, Cooper S, Defelicibus A, Flatten J, Koepnick B, Popović Z, Zaborowski B, Baker D, Cheng J, Czaplewski C, Delbem ACB, Floudas C, Kloczkowski A, Ołdziej S, Levitt M, Scheraga H, Seok C, Söding J, Vishveshwara S, Xu D; Foldit Players consortium, Crivelli SN.

Sci Rep. 2018 Jul 2;8(1):9939. doi: 10.1038/s41598-018-26812-8.

21.

In mountain and rural areas all CPR providers should perform chest compressions and rescue breaths for patients in cardiac arrest.

Wallner B, Brugger H, Ellerton J, Paal P.

Resuscitation. 2018 Jun;127:e5. doi: 10.1016/j.resuscitation.2018.01.029. No abstract available.

PMID:
29860989
22.

Fight or flight? Effects of vaginal oestrus on cortisol, testosterone, and behaviour in guinea pig female-female interaction.

Glenk LM, Machatschke IH, Wallner B.

Behav Processes. 2018 Dec;157:625-631. doi: 10.1016/j.beproc.2018.04.008. Epub 2018 Apr 11.

PMID:
29654828
23.

Identifying clinically relevant sliding hiatal hernias: a population-based endoscopy study.

Wallner B, Björ O, Andreasson A, Hellström PM, Forsberg AM, Talley NJ, Agreus L.

Scand J Gastroenterol. 2018 Jun;53(6):657-660. doi: 10.1080/00365521.2018.1458896. Epub 2018 Apr 4.

PMID:
29616831
24.

Improved protein model quality assessments by changing the target function.

Uziela K, Menéndez Hurtado D, Shu N, Wallner B, Elofsson A.

Proteins. 2018 Jun;86(6):654-663. doi: 10.1002/prot.25492. Epub 2018 Apr 15.

PMID:
29524250
25.

Ancient genomes revisit the ancestry of domestic and Przewalski's horses.

Gaunitz C, Fages A, Hanghøj K, Albrechtsen A, Khan N, Schubert M, Seguin-Orlando A, Owens IJ, Felkel S, Bignon-Lau O, de Barros Damgaard P, Mittnik A, Mohaseb AF, Davoudi H, Alquraishi S, Alfarhan AH, Al-Rasheid KAS, Crubézy E, Benecke N, Olsen S, Brown D, Anthony D, Massy K, Pitulko V, Kasparov A, Brem G, Hofreiter M, Mukhtarova G, Baimukhanov N, Lõugas L, Onar V, Stockhammer PW, Krause J, Boldgiv B, Undrakhbold S, Erdenebaatar D, Lepetz S, Mashkour M, Ludwig A, Wallner B, Merz V, Merz I, Zaibert V, Willerslev E, Librado P, Outram AK, Orlando L.

Science. 2018 Apr 6;360(6384):111-114. doi: 10.1126/science.aao3297. Epub 2018 Feb 22.

PMID:
29472442
26.

Asian horses deepen the MSY phylogeny.

Felkel S, Vogl C, Rigler D, Jagannathan V, Leeb T, Fries R, Neuditschko M, Rieder S, Velie B, Lindgren G, Rubin CJ, Schlötterer C, Rattei T, Brem G, Wallner B.

Anim Genet. 2018 Feb;49(1):90-93. doi: 10.1111/age.12635. Epub 2018 Jan 15.

PMID:
29333704
27.

Dietary fatty acids sex-specifically modulate guinea pig postnatal development via cortisol concentrations.

Nemeth M, Millesi E, Schuster D, Quint R, Wagner KH, Wallner B.

Sci Rep. 2018 Jan 11;8(1):471. doi: 10.1038/s41598-017-18978-4.

28.

Steroid hormone concentrations and body mass are differently affected by polyunsaturated fatty acids during the oestrous cycle in guinea pigs.

Nemeth M, Wallner B, Siutz C, Pschernig E, Wagner KH, Millesi E.

Reprod Fertil Dev. 2018 Jul;30(8):1077-1086. doi: 10.1071/RD17242.

PMID:
29306361
29.

Exchange of genetic information between therian X and Y chromosome gametologs in old evolutionary strata.

Peneder P, Wallner B, Vogl C.

Ecol Evol. 2017 Sep 12;7(20):8478-8487. doi: 10.1002/ece3.3278. eCollection 2017 Oct.

30.

Methods for estimation of model accuracy in CASP12.

Elofsson A, Joo K, Keasar C, Lee J, Maghrabi AHA, Manavalan B, McGuffin LJ, Ménendez Hurtado D, Mirabello C, Pilstål R, Sidi T, Uziela K, Wallner B.

Proteins. 2018 Mar;86 Suppl 1:361-373. doi: 10.1002/prot.25395. Epub 2017 Oct 17.

31.

Solution NMR structure of the TRIM21 B-box2 and identification of residues involved in its interaction with the RING domain.

Wallenhammar A, Anandapadamanaban M, Lemak A, Mirabello C, Lundström P, Wallner B, Sunnerhagen M.

PLoS One. 2017 Jul 28;12(7):e0181551. doi: 10.1371/journal.pone.0181551. eCollection 2017.

32.

Developing a 670k genotyping array to tag ~2M SNPs across 24 horse breeds.

Schaefer RJ, Schubert M, Bailey E, Bannasch DL, Barrey E, Bar-Gal GK, Brem G, Brooks SA, Distl O, Fries R, Finno CJ, Gerber V, Haase B, Jagannathan V, Kalbfleisch T, Leeb T, Lindgren G, Lopes MS, Mach N, da Câmara Machado A, MacLeod JN, McCoy A, Metzger J, Penedo C, Polani S, Rieder S, Tammen I, Tetens J, Thaller G, Verini-Supplizi A, Wade CM, Wallner B, Orlando L, Mickelson JR, McCue ME.

BMC Genomics. 2017 Jul 27;18(1):565. doi: 10.1186/s12864-017-3943-8.

33.

Biophysical characterization of the calmodulin-like domain of Plasmodium falciparum calcium dependent protein kinase 3.

Andresen C, Niklasson M, Cassman Eklöf S, Wallner B, Lundström P.

PLoS One. 2017 Jul 26;12(7):e0181721. doi: 10.1371/journal.pone.0181721. eCollection 2017.

34.

Status, Stress and Performance in Track and Field Athletes during the European Games in Baku (Azerbaijan).

Siart B, Nimmerichter A, Vidotto C, Wallner B.

Sci Rep. 2017 Jul 20;7(1):6076. doi: 10.1038/s41598-017-06461-z.

35.

Y Chromosome Uncovers the Recent Oriental Origin of Modern Stallions.

Wallner B, Palmieri N, Vogl C, Rigler D, Bozlak E, Druml T, Jagannathan V, Leeb T, Fries R, Tetens J, Thaller G, Metzger J, Distl O, Lindgren G, Rubin CJ, Andersson L, Schaefer R, McCue M, Neuditschko M, Rieder S, Schlötterer C, Brem G.

Curr Biol. 2017 Jul 10;27(13):2029-2035.e5. doi: 10.1016/j.cub.2017.05.086. Epub 2017 Jun 29.

36.

Corrigendum: Pulling Rank: Military Rank Affects Hormone Levels and Fairness in an Allocation Experiment.

Siart B, Pflüger LS, Wallner B.

Front Psychol. 2017 Jun 8;8:955. doi: 10.3389/fpsyg.2017.00955. eCollection 2017.

37.

One amino acid makes a difference-Characterization of a new TPMT allele and the influence of SAM on TPMT stability.

Iu YPH, Helander S, Kahlin AZ, Cheng CW, Shek CC, Leung MH, Wallner B, Mårtensson LG, Appell ML.

Sci Rep. 2017 May 2;7:46428. doi: 10.1038/srep46428.

38.

A missense mutation in damage-specific DNA binding protein 2 is a genetic risk factor for limbal squamous cell carcinoma in horses.

Bellone RR, Liu J, Petersen JL, Mack M, Singer-Berk M, Drögemüller C, Malvick J, Wallner B, Brem G, Penedo MC, Lassaline M.

Int J Cancer. 2017 Jul 15;141(2):342-353. doi: 10.1002/ijc.30744. Epub 2017 May 8.

39.

Reproductive performance and gestational effort in relation to dietary fatty acids in guinea pigs.

Nemeth M, Millesi E, Siutz C, Wagner KH, Quint R, Wallner B.

J Anim Sci Biotechnol. 2017 Apr 1;8:28. doi: 10.1186/s40104-017-0158-4. eCollection 2017.

40.

MARRIAGE GAP IN CHRISTIANS AND MUSLIMS.

Fieder M, Huber S, Pichl E, Wallner B, Seidler H.

J Biosoc Sci. 2018 Mar;50(2):145-160. doi: 10.1017/S0021932017000086. Epub 2017 Apr 3.

PMID:
28367793
41.

Proteus: a random forest classifier to predict disorder-to-order transitioning binding regions in intrinsically disordered proteins.

Basu S, Söderquist F, Wallner B.

J Comput Aided Mol Des. 2017 May;31(5):453-466. doi: 10.1007/s10822-017-0020-y. Epub 2017 Apr 1.

42.

Patterns of correlation of facial shape with physiological measurements are more integrated than patterns of correlation with ratings.

Windhager S, Bookstein FL, Millesi E, Wallner B, Schaefer K.

Sci Rep. 2017 Mar 28;7:45340. doi: 10.1038/srep45340.

43.

InterPred: A pipeline to identify and model protein-protein interactions.

Mirabello C, Wallner B.

Proteins. 2017 Jun;85(6):1159-1170. doi: 10.1002/prot.25280. Epub 2017 Mar 21.

44.

ProQ3D: improved model quality assessments using deep learning.

Uziela K, Menéndez Hurtado D, Shu N, Wallner B, Elofsson A.

Bioinformatics. 2017 May 15;33(10):1578-1580. doi: 10.1093/bioinformatics/btw819.

PMID:
28052925
45.

Pulling Rank: Military Rank Affects Hormone Levels and Fairness in an Allocation Experiment.

Siart B, Pflüger LS, Wallner B.

Front Psychol. 2016 Nov 11;7:1750. eCollection 2016. Erratum in: Front Psychol. 2017 Jun 08;8:955.

46.

Towards a healthy stomach? Helicobacter pylori prevalence has dramatically decreased over 23 years in adults in a Swedish community.

Agréus L, Hellström PM, Talley NJ, Wallner B, Forsberg A, Vieth M, Veits L, Björkegren K, Engstrand L, Andreasson A.

United European Gastroenterol J. 2016 Oct;4(5):686-696. Epub 2015 Dec 18.

47.

ProQ3: Improved model quality assessments using Rosetta energy terms.

Uziela K, Shu N, Wallner B, Elofsson A.

Sci Rep. 2016 Oct 4;6:33509. doi: 10.1038/srep33509.

48.

Sex-specific effects of dietary fatty acids on saliva cortisol and social behavior in guinea pigs under different social environmental conditions.

Nemeth M, Millesi E, Puehringer-Sturmayr V, Kaplan A, Wagner KH, Quint R, Wallner B.

Biol Sex Differ. 2016 Sep 22;7:51. doi: 10.1186/s13293-016-0107-5. eCollection 2016.

49.

DockQ: A Quality Measure for Protein-Protein Docking Models.

Basu S, Wallner B.

PLoS One. 2016 Aug 25;11(8):e0161879. doi: 10.1371/journal.pone.0161879. eCollection 2016.

50.

Mutation-Induced Population Shift in the MexR Conformational Ensemble Disengages DNA Binding: A Novel Mechanism for MarR Family Derepression.

Anandapadamanaban M, Pilstål R, Andresen C, Trewhella J, Moche M, Wallner B, Sunnerhagen M.

Structure. 2016 Aug 2;24(8):1311-1321. doi: 10.1016/j.str.2016.06.008. Epub 2016 Jul 14.

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