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Author Correction: Transcriptomics analysis of host liver and meta-transcriptome analysis of rumen epimural microbial community in young calves treated with artificial dosing of rumen content from adult donor cow.

Li W, Edwards A, Riehle C, Cox MS, Raabis S, Skarlupka JH, Steinberger AJ, Walling J, Bickhart D, Suen G.

Sci Rep. 2019 May 28;9(1):8116. doi: 10.1038/s41598-019-44428-4.



Tirosh A, Killian JK, Zhu YJ, Petersen D, Walling J, Mor-Cohen R, Neychev V, Stevenson H, Keutgen XM, Patel D, Nilubol N, Meltzer P, Kebebew E.

Endocr Pract. 2019 Mar 13. doi: 10.4158/EP-2018-0603. [Epub ahead of print]


Transcriptomics analysis of host liver and meta-transcriptome analysis of rumen epimural microbial community in young calves treated with artificial dosing of rumen content from adult donor cow.

Li W, Edwards A, Riehle C, Cox MS, Raabis S, Skarlupka JH, Steinberger AJ, Walling J, Bickhart D, Suen G.

Sci Rep. 2019 Jan 28;9(1):790. doi: 10.1038/s41598-018-37033-4. Erratum in: Sci Rep. 2019 May 28;9(1):8116.


Comparative gene expression analysis of the β-amylase and hordein gene families in the developing barley grain.

Vinje MA, Walling JG, Henson CA, Duke SH.

Gene. 2019 Apr 20;693:127-136. doi: 10.1016/j.gene.2018.12.041. Epub 2018 Dec 27.


Comparison of Oryza sativa and Oryza brachyantha Genomes Reveals Selection-Driven Gene Escape from the Centromeric Regions.

Liao Y, Zhang X, Li B, Liu T, Chen J, Bai Z, Wang M, Shi J, Walling JG, Wing RA, Jiang J, Chen M.

Plant Cell. 2018 Aug;30(8):1729-1744. doi: 10.1105/tpc.18.00163. Epub 2018 Jul 2.


Evaluation and selection of internal reference genes from two- and six-row U.S. malting barley varieties throughout micromalting for use in RT-qPCR.

Walling JG, Zalapa LA, Vinje MA.

PLoS One. 2018 May 8;13(5):e0196966. doi: 10.1371/journal.pone.0196966. eCollection 2018.


Detailed longitudinal sampling of glioma stem cells in situ reveals Chr7 gain and Chr10 loss as repeated events in primary tumor formation and recurrence.

Baysan M, Woolard K, Cam MC, Zhang W, Song H, Kotliarova S, Balamatsias D, Linkous A, Ahn S, Walling J, Belova GI, Fine HA.

Int J Cancer. 2017 Nov 15;141(10):2002-2013. doi: 10.1002/ijc.30887. Epub 2017 Aug 21.


Common Molecular Subtypes Among Asian Hepatocellular Carcinoma and Cholangiocarcinoma.

Chaisaingmongkol J, Budhu A, Dang H, Rabibhadana S, Pupacdi B, Kwon SM, Forgues M, Pomyen Y, Bhudhisawasdi V, Lertprasertsuke N, Chotirosniramit A, Pairojkul C, Auewarakul CU, Sricharunrat T, Phornphutkul K, Sangrajrang S, Cam M, He P, Hewitt SM, Ylaya K, Wu X, Andersen JB, Thorgeirsson SS, Waterfall JJ, Zhu YJ, Walling J, Stevenson HS, Edelman D, Meltzer PS, Loffredo CA, Hama N, Shibata T, Wiltrout RH, Harris CC, Mahidol C, Ruchirawat M, Wang XW; TIGER-LC Consortium.

Cancer Cell. 2017 Jul 10;32(1):57-70.e3. doi: 10.1016/j.ccell.2017.05.009. Epub 2017 Jun 22.


Corrigendum to "KB004, a first in class monoclonal antibody targeting the receptor tyrosine kinase EphA3, in patients with advanced hematologic malignancies: Results from a phase 1 study" [Leuk. Res. 50 (Nov) (2016) 123-131. PubMed PMID: 27736729].

Swords RT, Greenberg PL, Wei AH, Durrant S, Advani AS, Hertzberg MS, Lewis ID, Rivera G, Gratzinger D, Fan AC, Felsher DW, Cortes JE, Watts JM, Yarranton GT, Walling JM, Lancet JE.

Leuk Res. 2017 Aug;59:65. doi: 10.1016/j.leukres.2017.02.007. Epub 2017 May 30. No abstract available.


A Core Regulatory Circuit in Glioblastoma Stem Cells Links MAPK Activation to a Transcriptional Program of Neural Stem Cell Identity.

Riddick G, Kotliarova S, Rodriguez V, Kim HS, Linkous A, Storaska AJ, Ahn S, Walling J, Belova G, Fine HA.

Sci Rep. 2017 Mar 3;7:43605. doi: 10.1038/srep43605.


KB004, a first in class monoclonal antibody targeting the receptor tyrosine kinase EphA3, in patients with advanced hematologic malignancies: Results from a phase 1 study.

Swords RT, Greenberg PL, Wei AH, Durrant S, Advani AS, Hertzberg MS, Jonas BA, Lewis ID, Rivera G, Gratzinger D, Fan AC, Felsher DW, Cortes JE, Watts JM, Yarranton GT, Walling JM, Lancet JE.

Leuk Res. 2016 Nov;50:123-131. doi: 10.1016/j.leukres.2016.09.012. Epub 2016 Sep 28. Erratum in: Leuk Res. 2017 Aug;59:65.


First-in-Human Phase I/II Study of NEOD001 in Patients With Light Chain Amyloidosis and Persistent Organ Dysfunction.

Gertz MA, Landau H, Comenzo RL, Seldin D, Weiss B, Zonder J, Merlini G, Schönland S, Walling J, Kinney GG, Koller M, Schenk DB, Guthrie SD, Liedtke M.

J Clin Oncol. 2016 Apr 1;34(10):1097-103. doi: 10.1200/JCO.2015.63.6530. Epub 2016 Feb 8.


Length of attending-student and resident-student interactions in the inpatient medicine clerkship.

Osman NY, Walling JL, Mitchell VG, Alexander EK.

Teach Learn Med. 2015;27(2):130-7. doi: 10.1080/10401334.2015.1011655.


Textual analysis of internal medicine residency personal statements: themes and gender differences.

Osman NY, Schonhardt-Bailey C, Walling JL, Katz JT, Alexander EK.

Med Educ. 2015 Jan;49(1):93-102. doi: 10.1111/medu.12487.


Recurrent epimutation of SDHC in gastrointestinal stromal tumors.

Killian JK, Miettinen M, Walker RL, Wang Y, Zhu YJ, Waterfall JJ, Noyes N, Retnakumar P, Yang Z, Smith WI Jr, Killian MS, Lau CC, Pineda M, Walling J, Stevenson H, Smith C, Wang Z, Lasota J, Kim SY, Boikos SA, Helman LJ, Meltzer PS.

Sci Transl Med. 2014 Dec 24;6(268):268ra177. doi: 10.1126/scitranslmed.3009961.


An in silico screen links gene expression signatures to drug response in glioblastoma stem cells.

Riddick G, Song H, Holbeck SL, Kopp W, Walling J, Ahn S, Zhang W, Fine HA.

Pharmacogenomics J. 2015 Aug;15(4):347-53. doi: 10.1038/tpj.2014.61. Epub 2014 Dec 2.


Identification of molecular pathways facilitating glioma cell invasion in situ.

Nevo I, Woolard K, Cam M, Li A, Webster JD, Kotliarov Y, Kim HS, Ahn S, Walling J, Kotliarova S, Belova G, Song H, Bailey R, Zhang W, Fine HA.

PLoS One. 2014 Nov 3;9(11):e111783. doi: 10.1371/journal.pone.0111783. eCollection 2014.


Micro-environment causes reversible changes in DNA methylation and mRNA expression profiles in patient-derived glioma stem cells.

Baysan M, Woolard K, Bozdag S, Riddick G, Kotliarova S, Cam MC, Belova GI, Ahn S, Zhang W, Song H, Walling J, Stevenson H, Meltzer P, Fine HA.

PLoS One. 2014 Apr 11;9(4):e94045. doi: 10.1371/journal.pone.0094045. eCollection 2014.


In reply to Weissman.

Alexander EK, Osman NY, Walling JL, Mitchell VG.

Acad Med. 2013 Apr;88(4):434-5. doi: 10.1097/ACM.0b013e318285f4bc. No abstract available.


A standardized approach to grading clerkships: hard to achieve and not worth it anyway.

Alexander EK, Osman NY, Walling JL, Mitchell VG.

Acad Med. 2013 Mar;88(3):296. doi: 10.1097/ACM.0b013e3182816859. No abstract available.


Histone demethylase Jumonji D3 (JMJD3) as a tumor suppressor by regulating p53 protein nuclear stabilization.

Ene CI, Edwards L, Riddick G, Baysan M, Woolard K, Kotliarova S, Lai C, Belova G, Cam M, Walling J, Zhou M, Stevenson H, Kim HS, Killian K, Veenstra T, Bailey R, Song H, Zhang W, Fine HA.

PLoS One. 2012;7(12):e51407. doi: 10.1371/journal.pone.0051407. Epub 2012 Dec 7.


G-cimp status prediction of glioblastoma samples using mRNA expression data.

Baysan M, Bozdag S, Cam MC, Kotliarova S, Ahn S, Walling J, Killian JK, Stevenson H, Meltzer P, Fine HA.

PLoS One. 2012;7(11):e47839. doi: 10.1371/journal.pone.0047839. Epub 2012 Nov 6.


Fluorescence in situ hybridization techniques for cytogenetic and genomic analyses.

Walling JG, Zhang W, Jiang J.

Methods Mol Biol. 2013;956:13-27. doi: 10.1007/978-1-62703-194-3_2.


Variation and imprecision of clerkship grading in U.S. medical schools.

Alexander EK, Osman NY, Walling JL, Mitchell VG.

Acad Med. 2012 Aug;87(8):1070-6. doi: 10.1097/ACM.0b013e31825d0a2a.


Anticoagulation therapy in older adults newly diagnosed with atrial fibrillation.

Walling J, Spain M, Edlund BJ.

J Gerontol Nurs. 2011 Oct;37(10):9-13. doi: 10.3928/00989134-20110831-05. Epub 2011 Sep 16.


Conservation and purifying selection of transcribed genes located in a rice centromere.

Fan C, Walling JG, Zhang J, Hirsch CD, Jiang J, Wing RA.

Plant Cell. 2011 Aug;23(8):2821-30. doi: 10.1105/tpc.111.085605. Epub 2011 Aug 19.


Prediction of Associations between microRNAs and Gene Expression in Glioma Biology.

Wuchty S, Arjona D, Li A, Kotliarov Y, Walling J, Ahn S, Zhang A, Maric D, Anolik R, Zenklusen JC, Fine HA.

PLoS One. 2011 Feb 16;6(2):e14681. doi: 10.1371/journal.pone.0014681.


Predicting in vitro drug sensitivity using Random Forests.

Riddick G, Song H, Ahn S, Walling J, Borges-Rivera D, Zhang W, Fine HA.

Bioinformatics. 2011 Jan 15;27(2):220-4. doi: 10.1093/bioinformatics/btq628. Epub 2010 Dec 5.


Gene pathways and subnetworks distinguish between major glioma subtypes and elucidate potential underlying biology.

Wuchty S, Zhang A, Walling J, Ahn S, Li A, Quezado M, Oberholtzer C, Zenklusen JC, Fine HA.

J Biomed Inform. 2010 Dec;43(6):945-52. doi: 10.1016/j.jbi.2010.08.011. Epub 2010 Sep 7.


A neo-sex chromosome that drives postzygotic sex determination in the hessian fly (Mayetiola destructor).

Benatti TR, Valicente FH, Aggarwal R, Zhao C, Walling JG, Chen MS, Cambron SE, Schemerhorn BJ, Stuart JJ.

Genetics. 2010 Mar;184(3):769-77. doi: 10.1534/genetics.109.108589. Epub 2009 Dec 21.


A purine scaffold Hsp90 inhibitor destabilizes BCL-6 and has specific antitumor activity in BCL-6-dependent B cell lymphomas.

Cerchietti LC, Lopes EC, Yang SN, Hatzi K, Bunting KL, Tsikitas LA, Mallik A, Robles AI, Walling J, Varticovski L, Shaknovich R, Bhalla KN, Chiosis G, Melnick A.

Nat Med. 2009 Dec;15(12):1369-76. doi: 10.1038/nm.2059. Epub 2009 Nov 22.


A lineage-specific centromere retrotransposon in Oryza brachyantha.

Gao D, Gill N, Kim HR, Walling JG, Zhang W, Fan C, Yu Y, Ma J, SanMiguel P, Jiang N, Cheng Z, Wing RA, Jiang J, Jackson SA.

Plant J. 2009 Dec;60(5):820-31. doi: 10.1111/j.1365-313X.2009.04005.x. Epub 2009 Aug 21.


Molecular and chromosomal evidence for allopolyploidy in soybean.

Gill N, Findley S, Walling JG, Hans C, Ma J, Doyle J, Stacey G, Jackson SA.

Plant Physiol. 2009 Nov;151(3):1167-74. doi: 10.1104/pp.109.137935. Epub 2009 Jul 15.


Structure and evolution of plant centromeres.

Nagaki K, Walling J, Hirsch C, Jiang J, Murata M.

Prog Mol Subcell Biol. 2009;48:153-79. doi: 10.1007/978-3-642-00182-6_6. Review.


A phase I trial of enzastaurin in patients with recurrent gliomas.

Kreisl TN, Kim L, Moore K, Duic P, Kotliarova S, Walling J, Musib L, Thornton D, Albert PS, Fine HA.

Clin Cancer Res. 2009 May 15;15(10):3617-23. doi: 10.1158/1078-0432.CCR-08-3071. Epub 2009 May 5.


Unsupervised analysis of transcriptomic profiles reveals six glioma subtypes.

Li A, Walling J, Ahn S, Kotliarov Y, Su Q, Quezado M, Oberholtzer JC, Park J, Zenklusen JC, Fine HA.

Cancer Res. 2009 Mar 1;69(5):2091-9. doi: 10.1158/0008-5472.CAN-08-2100. Epub 2009 Feb 24.


The position of repetitive DNA sequence in the southern cattle tick genome permits chromosome identification.

Hill CA, Guerrero FD, Van Zee JP, Geraci NS, Walling JG, Stuart JJ.

Chromosome Res. 2009;17(1):77-89. doi: 10.1007/s10577-008-9003-0. Epub 2009 Feb 17.


Correlation analysis between single-nucleotide polymorphism and expression arrays in gliomas identifies potentially relevant target genes.

Kotliarov Y, Kotliarova S, Charong N, Li A, Walling J, Aquilanti E, Ahn S, Steed ME, Su Q, Center A, Zenklusen JC, Fine HA.

Cancer Res. 2009 Feb 15;69(4):1596-603. doi: 10.1158/0008-5472.CAN-08-2496. Epub 2009 Feb 3.


Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean.

Innes RW, Ameline-Torregrosa C, Ashfield T, Cannon E, Cannon SB, Chacko B, Chen NW, Couloux A, Dalwani A, Denny R, Deshpande S, Egan AN, Glover N, Hans CS, Howell S, Ilut D, Jackson S, Lai H, Mammadov J, Del Campo SM, Metcalf M, Nguyen A, O'Bleness M, Pfeil BE, Podicheti R, Ratnaparkhe MB, Samain S, Sanders I, Ségurens B, Sévignac M, Sherman-Broyles S, Thareau V, Tucker DM, Walling J, Wawrzynski A, Yi J, Doyle JJ, Geffroy V, Roe BA, Maroof MA, Young ND.

Plant Physiol. 2008 Dec;148(4):1740-59. doi: 10.1104/pp.108.127902. Epub 2008 Oct 8.


Genomic changes and gene expression profiles reveal that established glioma cell lines are poorly representative of primary human gliomas.

Li A, Walling J, Kotliarov Y, Center A, Steed ME, Ahn SJ, Rosenblum M, Mikkelsen T, Zenklusen JC, Fine HA.

Mol Cancer Res. 2008 Jan;6(1):21-30. doi: 10.1158/1541-7786.MCR-07-0280. Epub 2008 Jan 9.


Epigenetic-mediated dysfunction of the bone morphogenetic protein pathway inhibits differentiation of glioblastoma-initiating cells.

Lee J, Son MJ, Woolard K, Donin NM, Li A, Cheng CH, Kotliarova S, Kotliarov Y, Walling J, Ahn S, Kim M, Totonchy M, Cusack T, Ene C, Ma H, Su Q, Zenklusen JC, Zhang W, Maric D, Fine HA.

Cancer Cell. 2008 Jan;13(1):69-80. doi: 10.1016/j.ccr.2007.12.005.


Construction and characterization of two bacterial artificial chromosome libraries of pea (Pisum sativum L.) for the isolation of economically important genes.

Coyne CJ, McClendon MT, Walling JG, Timmerman-Vaughan GM, Murray S, Meksem K, Lightfoot DA, Shultz JL, Keller KE, Martin RR, Inglis DA, Rajesh PN, McPhee KE, Weeden NF, Grusak MA, Li CM, Storlie EW.

Genome. 2007 Sep;50(9):871-5.


Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza.

Ammiraju JS, Zuccolo A, Yu Y, Song X, Piegu B, Chevalier F, Walling JG, Ma J, Talag J, Brar DS, SanMiguel PJ, Jiang N, Jackson SA, Panaud O, Wing RA.

Plant J. 2007 Oct;52(2):342-51. Epub 2007 Aug 30.


Waterborne pathogens in urban watersheds.

Arnone RD, Walling JP.

J Water Health. 2007 Mar;5(1):149-62.


Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type).

Kim H, San Miguel P, Nelson W, Collura K, Wissotski M, Walling JG, Kim JP, Jackson SA, Soderlund C, Wing RA.

Genetics. 2007 May;176(1):379-90. Epub 2007 Mar 4.


High-resolution global genomic survey of 178 gliomas reveals novel regions of copy number alteration and allelic imbalances.

Kotliarov Y, Steed ME, Christopher N, Walling J, Su Q, Center A, Heiss J, Rosenblum M, Mikkelsen T, Zenklusen JC, Fine HA.

Cancer Res. 2006 Oct 1;66(19):9428-36. Erratum in: Cancer Res. 2007 Mar 1;67(5):2389.


Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum.

Hass-Jacobus BL, Futrell-Griggs M, Abernathy B, Westerman R, Goicoechea JL, Stein J, Klein P, Hurwitz B, Zhou B, Rakhshan F, Sanyal A, Gill N, Lin JY, Walling JG, Luo MZ, Ammiraju JS, Kudrna D, Kim HR, Ware D, Wing RA, San Miguel P, Jackson SA.

BMC Genomics. 2006 Aug 8;7:199.


Evaluating Cryptosporidium and Giardia concentrations in combined sewer overflow.

Arnone RD, Walling JP.

J Water Health. 2006 Jun;4(2):157-65.


Neuronal and glioma-derived stem cell factor induces angiogenesis within the brain.

Sun L, Hui AM, Su Q, Vortmeyer A, Kotliarov Y, Pastorino S, Passaniti A, Menon J, Walling J, Bailey R, Rosenblum M, Mikkelsen T, Fine HA.

Cancer Cell. 2006 Apr;9(4):287-300.

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