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Items: 25


The tomato translational landscape revealed by transcriptome assembly and ribosome profiling.

Wu HL, Song G, Walley JW, Hsu PY.

Plant Physiol. 2019 Jun 27. pii: pp.00541.2019. doi: 10.1104/pp.19.00541. [Epub ahead of print]


Directions for research and training in plant omics: Big Questions and Big Data.

Argueso CT, Assmann SM, Birnbaum KD, Chen S, Dinneny JR, Doherty CJ, Eveland AL, Friesner J, Greenlee VR, Law JA, Marshall-Colón A, Mason GA, O'Lexy R, Peck SC, Schmitz RJ, Song L, Stern D, Varagona MJ, Walley JW, Williams CM.

Plant Direct. 2019 Apr 23;3(4):e00133. doi: 10.1002/pld3.133. eCollection 2019 Apr.


Maize defective kernel5 is a bacterial TamB homologue required for chloroplast envelope biogenesis.

Zhang J, Wu S, Boehlein SK, McCarty DR, Song G, Walley JW, Myers A, Settles AM.

J Cell Biol. 2019 Jun 24. pii: jcb.201807166. doi: 10.1083/jcb.201807166. [Epub ahead of print]


Comparative Analysis of the Transcriptome and Proteome during Mouse Placental Development.

Abdulghani M, Song G, Kaur H, Walley JW, Tuteja G.

J Proteome Res. 2019 May 3;18(5):2088-2099. doi: 10.1021/acs.jproteome.8b00970. Epub 2019 Apr 15.


Quantitative Early Auxin Root Proteomics Identifies GAUT10, a Galacturonosyltransferase, as a Novel Regulator of Root Meristem Maintenance.

Pu Y, Walley JW, Shen Z, Lang MG, Briggs SP, Estelle M, Kelley DR.

Mol Cell Proteomics. 2019 Jun;18(6):1157-1170. doi: 10.1074/mcp.RA119.001378. Epub 2019 Mar 27.


Heterotrimeric G-Protein-Dependent Proteome and Phosphoproteome in Unstimulated Arabidopsis Roots.

Song G, Brachova L, Nikolau BJ, Jones AM, Walley JW.

Proteomics. 2018 Dec;18(24):e1800323. doi: 10.1002/pmic.201800323.


FERONIA Receptor Kinase Contributes to Plant Immunity by Suppressing Jasmonic Acid Signaling in Arabidopsis thaliana.

Guo H, Nolan TM, Song G, Liu S, Xie Z, Chen J, Schnable PS, Walley JW, Yin Y.

Curr Biol. 2018 Oct 22;28(20):3316-3324.e6. doi: 10.1016/j.cub.2018.07.078. Epub 2018 Sep 27.


Assessment and Refinement of Sample Preparation Methods for Deep and Quantitative Plant Proteome Profiling.

Song G, Hsu PY, Walley JW.

Proteomics. 2018 Sep;18(17):e1800220. doi: 10.1002/pmic.201800220. Epub 2018 Aug 27.


Fungal-induced protein hyperacetylation in maize identified by acetylome profiling.

Walley JW, Shen Z, McReynolds MR, Schmelz EA, Briggs SP.

Proc Natl Acad Sci U S A. 2018 Jan 2;115(1):210-215. doi: 10.1073/pnas.1717519115. Epub 2017 Dec 19.


Sample Preparation Protocols for Protein Abundance, Acetylome, and Phosphoproteome Profiling of Plant Tissues.

Song G, McReynolds MR, Walley JW.

Methods Mol Biol. 2017;1610:123-133. doi: 10.1007/978-1-4939-7003-2_9.


Integration of omic networks in a developmental atlas of maize.

Walley JW, Sartor RC, Shen Z, Schmitz RJ, Wu KJ, Urich MA, Nery JR, Smith LG, Schnable JC, Ecker JR, Briggs SP.

Science. 2016 Aug 19;353(6301):814-8. doi: 10.1126/science.aag1125.


Dynamic Protein Acetylation in Plant-Pathogen Interactions.

Song G, Walley JW.

Front Plant Sci. 2016 Mar 30;7:421. doi: 10.3389/fpls.2016.00421. eCollection 2016. Review.


Dual use of peptide mass spectra: Protein atlas and genome annotation.

Walley JW, Briggs SP.

Curr Plant Biol. 2015 May 1;2:21-24. Epub 2015 Apr 13.


A high-resolution tissue-specific proteome and phosphoproteome atlas of maize primary roots reveals functional gradients along the root axes.

Marcon C, Malik WA, Walley JW, Shen Z, Paschold A, Smith LG, Piepho HP, Briggs SP, Hochholdinger F.

Plant Physiol. 2015 May;168(1):233-46. doi: 10.1104/pp.15.00138. Epub 2015 Mar 16.


Reconstruction of protein networks from an atlas of maize seed proteotypes.

Walley JW, Shen Z, Sartor R, Wu KJ, Osborn J, Smith LG, Briggs SP.

Proc Natl Acad Sci U S A. 2013 Dec 3;110(49):E4808-17. doi: 10.1073/pnas.1319113110. Epub 2013 Nov 18.


An automated proteogenomic method uses mass spectrometry to reveal novel genes in Zea mays.

Castellana NE, Shen Z, He Y, Walley JW, Cassidy CJ, Briggs SP, Bafna V.

Mol Cell Proteomics. 2014 Jan;13(1):157-67. doi: 10.1074/mcp.M113.031260. Epub 2013 Oct 18.


Fatty acids and early detection of pathogens.

Walley JW, Kliebenstein DJ, Bostock RM, Dehesh K.

Curr Opin Plant Biol. 2013 Aug;16(4):520-6. doi: 10.1016/j.pbi.2013.06.011. Epub 2013 Jul 8. Review.


Arachidonic acid: an evolutionarily conserved signaling molecule modulates plant stress signaling networks.

Savchenko T, Walley JW, Chehab EW, Xiao Y, Kaspi R, Pye MF, Mohamed ME, Lazarus CM, Bostock RM, Dehesh K.

Plant Cell. 2010 Oct;22(10):3193-205. doi: 10.1105/tpc.110.073858. Epub 2010 Oct 8.


Investigating the function of CAF1 deadenylases during plant stress responses.

Walley JW, Kelley DR, Savchenko T, Dehesh K.

Plant Signal Behav. 2010 Jul;5(7):802-5. Epub 2010 Jul 1. Review.


Deficiencies in jasmonate-mediated plant defense reveal quantitative variation in Botrytis cinerea pathogenesis.

Rowe HC, Walley JW, Corwin J, Chan EK, Dehesh K, Kliebenstein DJ.

PLoS Pathog. 2010 Apr 15;6(4):e1000861. doi: 10.1371/journal.ppat.1000861.


Molecular mechanisms regulating rapid stress signaling networks in Arabidopsis.

Walley JW, Dehesh K.

J Integr Plant Biol. 2010 Apr;52(4):354-9. doi: 10.1111/j.1744-7909.2010.00940.x. Review.


Arabidopsis deadenylases AtCAF1a and AtCAF1b play overlapping and distinct roles in mediating environmental stress responses.

Walley JW, Kelley DR, Nestorova G, Hirschberg DL, Dehesh K.

Plant Physiol. 2010 Feb;152(2):866-75. doi: 10.1104/pp.109.149005. Epub 2009 Dec 2.


The chromatin remodeler SPLAYED regulates specific stress signaling pathways.

Walley JW, Rowe HC, Xiao Y, Chehab EW, Kliebenstein DJ, Wagner D, Dehesh K.

PLoS Pathog. 2008 Dec;4(12):e1000237. doi: 10.1371/journal.ppat.1000237. Epub 2008 Dec 12.


Mechanical stress induces biotic and abiotic stress responses via a novel cis-element.

Walley JW, Coughlan S, Hudson ME, Covington MF, Kaspi R, Banu G, Harmer SL, Dehesh K.

PLoS Genet. 2007 Oct;3(10):1800-12. Epub 2007 Aug 24.


Rice HYDROPEROXIDE LYASES with unique expression patterns generate distinct aldehyde signatures in Arabidopsis.

Chehab EW, Raman G, Walley JW, Perea JV, Banu G, Theg S, Dehesh K.

Plant Physiol. 2006 May;141(1):121-34. Epub 2006 Mar 10.

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