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An essential pentatricopeptide repeat protein in the apicomplexan remnant chloroplast.

Hicks JL, Lassadi I, Carpenter EF, Eno M, Vardakis A, Waller RF, Howe CJ, Nisbet RER.

Cell Microbiol. 2019 Dec;21(12):e13108. doi: 10.1111/cmi.13108. Epub 2019 Sep 16.


The Biochemistry and Evolution of the Dinoflagellate Nucleus.

Gornik SG, Hu I, Lassadi I, Waller RF.

Microorganisms. 2019 Aug 8;7(8). pii: E245. doi: 10.3390/microorganisms7080245. Review.


A new marine prasinophyte genus alternates between a flagellate and a dominant benthic stage with microrhizoids for adhesion.

Wetherbee R, Rossetto Marcelino V, Costa JF, Grant B, Crawford S, Waller RF, Andersen RA, Berry D, McFadden GI, Verbruggen H.

J Phycol. 2019 Dec;55(6):1210-1225. doi: 10.1111/jpy.12909. Epub 2019 Oct 9.


Genetic transformation of the dinoflagellate chloroplast.

Nimmo IC, Barbrook AC, Lassadi I, Chen JE, Geisler K, Smith AG, Aranda M, Purton S, Waller RF, Nisbet RER, Howe CJ.

Elife. 2019 Jul 18;8. pii: e45292. doi: 10.7554/eLife.45292.


Systematic analysis of Plasmodium myosins reveals differential expression, localisation, and function in invasive and proliferative parasite stages.

Wall RJ, Zeeshan M, Katris NJ, Limenitakis R, Rea E, Stock J, Brady D, Waller RF, Holder AA, Tewari R.

Cell Microbiol. 2019 Oct;21(10):e13082. doi: 10.1111/cmi.13082. Epub 2019 Jul 23.


Calcium negatively regulates secretion from dense granules in Toxoplasma gondii.

Katris NJ, Ke H, McFadden GI, van Dooren GG, Waller RF.

Cell Microbiol. 2019 Jun;21(6):e13011. doi: 10.1111/cmi.13011. Epub 2019 Feb 12.


Protein kinase A negatively regulates Ca2+ signalling in Toxoplasma gondii.

Uboldi AD, Wilde ML, McRae EA, Stewart RJ, Dagley LF, Yang L, Katris NJ, Hapuarachchi SV, Coffey MJ, Lehane AM, Botte CY, Waller RF, Webb AI, McConville MJ, Tonkin CJ.

PLoS Biol. 2018 Sep 12;16(9):e2005642. doi: 10.1371/journal.pbio.2005642. eCollection 2018 Sep.


Strength in numbers: Collaborative science for new experimental model systems.

Waller RF, Cleves PA, Rubio-Brotons M, Woods A, Bender SJ, Edgcomb V, Gann ER, Jones AC, Teytelman L, von Dassow P, Wilhelm SW, Collier JL.

PLoS Biol. 2018 Jul 2;16(7):e2006333. doi: 10.1371/journal.pbio.2006333. eCollection 2018 Jul.


Two essential Thioredoxins mediate apicoplast biogenesis, protein import, and gene expression in Toxoplasma gondii.

Biddau M, Bouchut A, Major J, Saveria T, Tottey J, Oka O, van-Lith M, Jennings KE, Ovciarikova J, DeRocher A, Striepen B, Waller RF, Parsons M, Sheiner L.

PLoS Pathog. 2018 Feb 22;14(2):e1006836. doi: 10.1371/journal.ppat.1006836. eCollection 2018 Feb.


Photosensitized INA-Labelled protein 1 (PhIL1) is novel component of the inner membrane complex and is required for Plasmodium parasite development.

Saini E, Zeeshan M, Brady D, Pandey R, Kaiser G, Koreny L, Kumar P, Thakur V, Tatiya S, Katris NJ, Limenitakis RS, Kaur I, Green JL, Bottrill AR, Guttery DS, Waller RF, Heussler V, Holder AA, Mohmmed A, Malhotra P, Tewari R.

Sci Rep. 2017 Nov 14;7(1):15577. doi: 10.1038/s41598-017-15781-z.


Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics.

Janouškovec J, Gavelis GS, Burki F, Dinh D, Bachvaroff TR, Gornik SG, Bright KJ, Imanian B, Strom SL, Delwiche CF, Waller RF, Fensome RA, Leander BS, Rohwer FL, Saldarriaga JF.

Proc Natl Acad Sci U S A. 2017 Jan 10;114(2):E171-E180. doi: 10.1073/pnas.1614842114. Epub 2016 Dec 27.


SAS6-like protein in Plasmodium indicates that conoid-associated apical complex proteins persist in invasive stages within the mosquito vector.

Wall RJ, Roques M, Katris NJ, Koreny L, Stanway RR, Brady D, Waller RF, Tewari R.

Sci Rep. 2016 Jun 24;6:28604. doi: 10.1038/srep28604.


Metabolic pathway redundancy within the apicomplexan-dinoflagellate radiation argues against an ancient chromalveolate plastid.

Waller RF, Gornik SG, Koreny L, Pain A.

Commun Integr Biol. 2015 Dec 8;9(1):e1116653. doi: 10.1080/19420889.2015.1116653. eCollection 2016 Jan-Feb.


Apicomplexan Energy Metabolism: Carbon Source Promiscuity and the Quiescence Hyperbole.

Jacot D, Waller RF, Soldati-Favre D, MacPherson DA, MacRae JI.

Trends Parasitol. 2016 Jan;32(1):56-70. doi: 10.1016/ Epub 2015 Oct 17. Review.


Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites.

Woo YH, Ansari H, Otto TD, Klinger CM, Kolisko M, Michálek J, Saxena A, Shanmugam D, Tayyrov A, Veluchamy A, Ali S, Bernal A, del Campo J, Cihlář J, Flegontov P, Gornik SG, Hajdušková E, Horák A, Janouškovec J, Katris NJ, Mast FD, Miranda-Saavedra D, Mourier T, Naeem R, Nair M, Panigrahi AK, Rawlings ND, Padron-Regalado E, Ramaprasad A, Samad N, Tomčala A, Wilkes J, Neafsey DE, Doerig C, Bowler C, Keeling PJ, Roos DS, Dacks JB, Templeton TJ, Waller RF, Lukeš J, Oborník M, Pain A.

Elife. 2015 Jul 15;4:e06974. doi: 10.7554/eLife.06974.


Endosymbiosis undone by stepwise elimination of the plastid in a parasitic dinoflagellate.

Gornik SG, Febrimarsa, Cassin AM, MacRae JI, Ramaprasad A, Rchiad Z, McConville MJ, Bacic A, McFadden GI, Pain A, Waller RF.

Proc Natl Acad Sci U S A. 2015 May 5;112(18):5767-72. doi: 10.1073/pnas.1423400112. Epub 2015 Apr 20.


The apical complex provides a regulated gateway for secretion of invasion factors in Toxoplasma.

Katris NJ, van Dooren GG, McMillan PJ, Hanssen E, Tilley L, Waller RF.

PLoS Pathog. 2014 Apr 17;10(4):e1004074. doi: 10.1371/journal.ppat.1004074. eCollection 2014 Apr.


New host range for Hematodinium in southern Australia and novel tools for sensitive detection of parasitic dinoflagellates.

Gornik SG, Cranenburgh A, Waller RF.

PLoS One. 2013 Dec 6;8(12):e82774. doi: 10.1371/journal.pone.0082774. eCollection 2013.


Dinoflagellate phylogeny revisited: using ribosomal proteins to resolve deep branching dinoflagellate clades.

Bachvaroff TR, Gornik SG, Concepcion GT, Waller RF, Mendez GS, Lippmeier JC, Delwiche CF.

Mol Phylogenet Evol. 2014 Jan;70:314-22. doi: 10.1016/j.ympev.2013.10.007. Epub 2013 Oct 14.


Mitochondrial Genes of Dinoflagellates Are Transcribed by a Nuclear-Encoded Single-Subunit RNA Polymerase.

Teng CY, Dang Y, Danne JC, Waller RF, Green BR.

PLoS One. 2013 Jun 19;8(6):e65387. doi: 10.1371/journal.pone.0065387. Print 2013.


Characterization of TtALV2, an essential charged repeat motif protein of the Tetrahymena thermophila membrane skeleton.

El-Haddad H, Przyborski JM, Kraft LG, McFadden GI, Waller RF, Gould SB.

Eukaryot Cell. 2013 Jun;12(6):932-40. doi: 10.1128/EC.00050-13. Epub 2013 Apr 19.


A widespread and unusual RNA trans-splicing type in dinoflagellate mitochondria.

Jackson CJ, Waller RF.

PLoS One. 2013;8(2):e56777. doi: 10.1371/journal.pone.0056777. Epub 2013 Feb 20.


A tertiary plastid gains RNA editing in its new host.

Jackson CJ, Gornik SG, Waller RF.

Mol Biol Evol. 2013 Apr;30(4):788-92. doi: 10.1093/molbev/mss270. Epub 2012 Nov 28.


Loss of nucleosomal DNA condensation coincides with appearance of a novel nuclear protein in dinoflagellates.

Gornik SG, Ford KL, Mulhern TD, Bacic A, McFadden GI, Waller RF.

Curr Biol. 2012 Dec 18;22(24):2303-12. doi: 10.1016/j.cub.2012.10.036. Epub 2012 Nov 15.


Alveolate mitochondrial metabolic evolution: dinoflagellates force reassessment of the role of parasitism as a driver of change in apicomplexans.

Danne JC, Gornik SG, Macrae JI, McConville MJ, Waller RF.

Mol Biol Evol. 2013 Jan;30(1):123-39. doi: 10.1093/molbev/mss205. Epub 2012 Aug 25.


Second genesis of a plastid organelle.

Waller RF.

Proc Natl Acad Sci U S A. 2012 Apr 3;109(14):5142-3. doi: 10.1073/pnas.1202904109. Epub 2012 Mar 23. No abstract available.


An assessment of vertical inheritance versus endosymbiont transfer of nucleus-encoded genes for mitochondrial proteins following tertiary endosymbiosis in Karlodinium micrum.

Danne JC, Gornik SG, Waller RF.

Protist. 2012 Jan;163(1):76-90. doi: 10.1016/j.protis.2011.03.002. Epub 2011 Jul 8.


Analysis of dinoflagellate mitochondrial protein sorting signals indicates a highly stable protein targeting system across eukaryotic diversity.

Danne JC, Waller RF.

J Mol Biol. 2011 May 13;408(4):643-53. doi: 10.1016/j.jmb.2011.02.057. Epub 2011 Mar 2.


Ciliate pellicular proteome identifies novel protein families with characteristic repeat motifs that are common to alveolates.

Gould SB, Kraft LG, van Dooren GG, Goodman CD, Ford KL, Cassin AM, Bacic A, McFadden GI, Waller RF.

Mol Biol Evol. 2011 Mar;28(3):1319-31. doi: 10.1093/molbev/msq321. Epub 2010 Dec 2.


Pathogenic adaptation of intracellular bacteria by rewiring a cis-regulatory input function.

Osborne SE, Walthers D, Tomljenovic AM, Mulder DT, Silphaduang U, Duong N, Lowden MJ, Wickham ME, Waller RF, Kenney LJ, Coombes BK.

Proc Natl Acad Sci U S A. 2009 Mar 10;106(10):3982-7. doi: 10.1073/pnas.0811669106. Epub 2009 Feb 20.


Dinoflagellate mitochondrial genomes: stretching the rules of molecular biology.

Waller RF, Jackson CJ.

Bioessays. 2009 Feb;31(2):237-45. doi: 10.1002/bies.200800164. Review.


The single mitochondrial porin of Trypanosoma brucei is the main metabolite transporter in the outer mitochondrial membrane.

Pusnik M, Charrière F, Mäser P, Waller RF, Dagley MJ, Lithgow T, Schneider A.

Mol Biol Evol. 2009 Mar;26(3):671-80. doi: 10.1093/molbev/msn288. Epub 2008 Dec 17.


Evidence of a reduced and modified mitochondrial protein import apparatus in microsporidian mitosomes.

Waller RF, Jabbour C, Chan NC, Celik N, Likic VA, Mulhern TD, Lithgow T.

Eukaryot Cell. 2009 Jan;8(1):19-26. doi: 10.1128/EC.00313-08. Epub 2008 Nov 21.


Alveolins, a new family of cortical proteins that define the protist infrakingdom Alveolata.

Gould SB, Tham WH, Cowman AF, McFadden GI, Waller RF.

Mol Biol Evol. 2008 Jun;25(6):1219-30. doi: 10.1093/molbev/msn070. Epub 2008 Mar 21.


Plastid evolution.

Gould SB, Waller RF, McFadden GI.

Annu Rev Plant Biol. 2008;59:491-517. doi: 10.1146/annurev.arplant.59.032607.092915. Review.


Structure, topology and function of the translocase of the outer membrane of mitochondria.

Perry AJ, Rimmer KA, Mertens HD, Waller RF, Mulhern TD, Lithgow T, Gooley PR.

Plant Physiol Biochem. 2008 Mar;46(3):265-74. doi: 10.1016/j.plaphy.2007.12.012. Epub 2008 Jan 3. Review.


Surface morphology of Saccinobaculus (Oxymonadida): implications for character evolution and function in oxymonads.

Carpenter KJ, Waller RF, Keeling PJ.

Protist. 2008 Apr;159(2):209-21. Epub 2007 Nov 19.


Broad genomic and transcriptional analysis reveals a highly derived genome in dinoflagellate mitochondria.

Jackson CJ, Norman JE, Schnare MN, Gray MW, Keeling PJ, Waller RF.

BMC Biol. 2007 Sep 27;5:41.


Origin and distribution of epipolythiodioxopiperazine (ETP) gene clusters in filamentous ascomycetes.

Patron NJ, Waller RF, Cozijnsen AJ, Straney DC, Gardiner DM, Nierman WC, Howlett BJ.

BMC Evol Biol. 2007 Sep 26;7:174.


Transit peptide diversity and divergence: A global analysis of plastid targeting signals.

Patron NJ, Waller RF.

Bioessays. 2007 Oct;29(10):1048-58. Review.


Alveolate and chlorophycean mitochondrial cox2 genes split twice independently.

Waller RF, Keeling PJ.

Gene. 2006 Nov 15;383:33-7. Epub 2006 Jul 20.


Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote.

Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK Jr, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA, Krieger CJ, del Toro C, Ryder HF, Williamson SC, Barbeau RA, Hamilton EP, Orias E.

PLoS Biol. 2006 Sep;4(9):e286.


PimE is a polyprenol-phosphate-mannose-dependent mannosyltransferase that transfers the fifth mannose of phosphatidylinositol mannoside in mycobacteria.

Morita YS, Sena CB, Waller RF, Kurokawa K, Sernee MF, Nakatani F, Haites RE, Billman-Jacobe H, McConville MJ, Maeda Y, Kinoshita T.

J Biol Chem. 2006 Sep 1;281(35):25143-55. Epub 2006 Jun 27.


Phylogenetic history of plastid-targeted proteins in the peridinin-containing dinoflagellate Heterocapsa triquetra.

Waller RF, Patron NJ, Keeling PJ.

Int J Syst Evol Microbiol. 2006 Jun;56(Pt 6):1439-47.


Lateral gene transfer of a multigene region from cyanobacteria to dinoflagellates resulting in a novel plastid-targeted fusion protein.

Waller RF, Slamovits CH, Keeling PJ.

Mol Biol Evol. 2006 Jul;23(7):1437-43. Epub 2006 May 4.


The C-terminal TPR domain of Tom70 defines a family of mitochondrial protein import receptors found only in animals and fungi.

Chan NC, Likić VA, Waller RF, Mulhern TD, Lithgow T.

J Mol Biol. 2006 May 12;358(4):1010-22. Epub 2006 Mar 20.


A tertiary plastid uses genes from two endosymbionts.

Patron NJ, Waller RF, Keeling PJ.

J Mol Biol. 2006 Apr 14;357(5):1373-82. Epub 2006 Feb 9.


Complex protein targeting to dinoflagellate plastids.

Patron NJ, Waller RF, Archibald JM, Keeling PJ.

J Mol Biol. 2005 May 13;348(4):1015-24.


Compartmentalization of lipid biosynthesis in mycobacteria.

Morita YS, Velasquez R, Taig E, Waller RF, Patterson JH, Tull D, Williams SJ, Billman-Jacobe H, McConville MJ.

J Biol Chem. 2005 Jun 3;280(22):21645-52. Epub 2005 Mar 31.

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