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Invasive Mycobacterium abscessus Complex Infection after Cardiac Surgery: Epidemiology, Management, and Clinical Outcomes.

Baker AW, Maziarz EK, Lewis SS, Stout JE, Anderson DJ, Smith PK, Schroder JN, Daneshmand MA, Alexander BD, Wallace RJ, Sexton DJ, Wolfe CR.

Clin Infect Dis. 2020 Mar 5. pii: ciaa215. doi: 10.1093/cid/ciaa215. [Epub ahead of print]


Postmortem observations on rumen wall histology and gene expression and ruminal and caecal content of beef cattle fattened on barley-based rations.

Jonsson NN, Ferguson HJ, Koh-Tan HHC, McCartney CA, Cernat RC, Strachan EM, Thomson W, Snelling TJ, Harvey CD, Andonovic I, Michie C, Wallace RJ.

Animal. 2019 Dec 26:1-14. doi: 10.1017/S1751731119002878. [Epub ahead of print]


Correction to: The rumen microbiome as a reservoir of antimicrobial resistance and pathogenicity genes is directly affected by diet in beef cattle.

Auffret MD, Dewhurst RJ, Duthie CA, Rooke JA, Wallace RJ, Freeman TC, Stewart R, Watson M, Roehe R.

Microbiome. 2019 Nov 18;7(1):149. doi: 10.1186/s40168-019-0764-9.


International Society of Cardiovascular Infectious Diseases Guidelines for the Diagnosis, Treatment and Prevention of Disseminated Mycobacterium chimaera Infection Following Cardiac Surgery with Cardiopulmonary Bypass.

Hasse B, Hannan MM, Keller PM, Maurer FP, Sommerstein R, Mertz D, Wagner D, Fernández-Hidalgo N, Nomura J, Manfrin V, Bettex D, Hernandez Conte A, Durante-Mangoni E, Tang TH, Stuart RL, Lundgren J, Gordon S, Jarashow MC, Schreiber PW, Niemann S, Kohl TA, Daley CL, Stewardson AJ, Whitener CJ, Perkins K, Plachouras D, Lamagni T, Chand M, Freiberger T, Zweifel S, Sander P, Schulthess B, Scriven JE, Sax H, van Ingen J, Mestres CA, Diekema D, Brown-Elliott BA, Wallace RJ Jr, Baddour LM, Miro JM, Hoen B; M. chimaera ISCVID Investigators and; ISCVID Executive Committee, Athan E, Bayer A, Barsic B, Corey GR, Chu VH, Durack DT, Fortes CQ, Fowler V, Hoen B, Krachmer AW, Durante-Magnoni E, Miro JM, Wilson WR; Infectious Diseases Specialists; Hospital Epidemiologists; Microbiologists and Molecular Typing Specialists; Cardiac Surgeons/ Perfusionists/ Cardiologists; Ophthalmology; Anaesthesiologists; Public Health.

J Hosp Infect. 2020 Feb;104(2):214-235. doi: 10.1016/j.jhin.2019.10.009. Epub 2019 Nov 9.


Evaluation of a novel rapidly-growing mycobacteria medium for isolation of Mycobacterium abscessus complex from respiratory specimens from patients with bronchiectasis.

Brown-Elliott BA, Molina S, Fly T, Njie O, Stribley P, Stephenson D, Wallace RJ Jr, Perry JD.

Heliyon. 2019 Oct 24;5(10):e02684. doi: 10.1016/j.heliyon.2019.e02684. eCollection 2019 Oct.


Susceptibility Testing of Mycobacteria, Nocardiae, and Other Aerobic Actinomycetes [Internet].

Woods GL, Brown-Elliott BA, Conville PS, Desmond EP, Hall GS, Lin G, Pfyffer GE, Ridderhof JC, Siddiqi SH, Wallace RJ Jr, Warren NG, Witebsky FG.

2nd edition. Wayne (PA): Clinical and Laboratory Standards Institute; 2011 Mar.


Comparison of Two Commercial Matrix-Assisted Laser Desorption/Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS) Systems for Identification of Nontuberculous Mycobacteria.

Brown-Elliott BA, Fritsche TR, Olson BJ, Vasireddy S, Vasireddy R, Iakhiaeva E, Alame D, Wallace RJ, Branda JA.

Am J Clin Pathol. 2019 Sep 9;152(4):527-536. doi: 10.1093/ajcp/aqz073.


Same meat, different gravy: ignore the new names of mycobacteria.

Tortoli E, Brown-Elliott BA, Chalmers JD, Cirillo DM, Daley CL, Emler S, Floto RA, Garcia MJ, Hoefsloot W, Koh WJ, Lange C, Loebinger M, Maurer FP, Morimoto K, Niemann S, Richter E, Turenne CY, Vasireddy R, Vasireddy S, Wagner D, Wallace RJ Jr, Wengenack N, van Ingen J.

Eur Respir J. 2019 Jul 11;54(1). pii: 1900795. doi: 10.1183/13993003.00795-2019. Print 2019 Jul. No abstract available.


A heritable subset of the core rumen microbiome dictates dairy cow productivity and emissions.

Wallace RJ, Sasson G, Garnsworthy PC, Tapio I, Gregson E, Bani P, Huhtanen P, Bayat AR, Strozzi F, Biscarini F, Snelling TJ, Saunders N, Potterton SL, Craigon J, Minuti A, Trevisi E, Callegari ML, Cappelli FP, Cabezas-Garcia EH, Vilkki J, Pinares-Patino C, Fliegerová KO, Mrázek J, Sechovcová H, Kopečný J, Bonin A, Boyer F, Taberlet P, Kokou F, Halperin E, Williams JL, Shingfield KJ, Mizrahi I.

Sci Adv. 2019 Jul 3;5(7):eaav8391. doi: 10.1126/sciadv.aav8391. eCollection 2019 Jul.


Genoprotective Effects of Essential Oil Compounds Against Oxidative and Methylated DNA Damage in Human Colon Cancer Cells.

Thapa D, Richardson AJ, Zweifel B, Wallace RJ, Gratz SW.

J Food Sci. 2019 Jul;84(7):1979-1985. doi: 10.1111/1750-3841.14665. Epub 2019 Jun 17.


Variation among human, veterinary and environmental Mycobacterium chelonae-abscessus complex isolates observed using core genome phylogenomic analysis, targeted gene comparison, and anti-microbial susceptibility patterns.

Fogelson SB, Camus AC, Lorenz WW, Vasireddy R, Vasireddy S, Smith T, Brown-Elliott BA, Wallace RJ Jr, Hasan NA, Reischl U, Sanchez S.

PLoS One. 2019 Mar 25;14(3):e0214274. doi: 10.1371/journal.pone.0214274. eCollection 2019.


Mycobacterium avium in Community and Household Water, Suburban Philadelphia, Pennsylvania, USA, 2010-2012.

Lande L, Alexander DC, Wallace RJ Jr, Kwait R, Iakhiaeva E, Williams M, Cameron ADS, Olshefsky S, Devon R, Vasireddy R, Peterson DD, Falkinham JO 3rd.

Emerg Infect Dis. 2019 Mar;25(3):473-481. doi: 10.3201/eid2503.180336.


Evaluation of reticuloruminal pH measurements from individual cattle: Sampling strategies for the assessment of herd status.

Jonsson NN, Kleen JL, Wallace RJ, Andonovic I, Michie C, Farish M, Mitchell M, Duthie CA, Jensen DB, Denwood MJ.

Vet J. 2019 Jan;243:26-32. doi: 10.1016/j.tvjl.2018.11.006. Epub 2018 Nov 14.


In Vitro Susceptibility Testing of Bedaquiline against Mycobacterium abscessus Complex.

Brown-Elliott BA, Wallace RJ Jr.

Antimicrob Agents Chemother. 2019 Jan 29;63(2). pii: e01919-18. doi: 10.1128/AAC.01919-18. Print 2019 Feb.


Mycobacterium avium pseudo-outbreak associated with an outpatient bronchoscopy clinic: Lessons for reprocessing.

Seidelman JL, Wallace RJ, Iakhiaeva E, Vasireddy R, Brown-Elliott BA, McKnight C, Chen LF, Smith T, Lewis SS.

Infect Control Hosp Epidemiol. 2019 Jan;40(1):106-108. doi: 10.1017/ice.2018.298. Epub 2018 Nov 26.


Mycobacterium talmoniae, a Potential Pulmonary Pathogen Isolated from Multiple Patients with Bronchiectasis in the United States, Including the First Case of Clinical Disease in a Patient with Cystic Fibrosis.

Vasireddy R, Vasireddy S, Brown-Elliott BA, Greninger AL, Davidson RM, Ard KL, Turenne CY, Wallace RJ Jr.

J Clin Microbiol. 2019 Jan 30;57(2). pii: e00906-18. doi: 10.1128/JCM.00906-18. Print 2019 Feb.


A definition of the Mycobacterium avium complex for taxonomical and clinical purposes, a review.

van Ingen J, Turenne CY, Tortoli E, Wallace RJ Jr, Brown-Elliott BA.

Int J Syst Evol Microbiol. 2018 Nov;68(11):3666-3677. doi: 10.1099/ijsem.0.003026. Epub 2018 Sep 19.


Amikacin Liposome Inhalation Suspension for Treatment-Refractory Lung Disease Caused by Mycobacterium avium Complex (CONVERT). A Prospective, Open-Label, Randomized Study.

Griffith DE, Eagle G, Thomson R, Aksamit TR, Hasegawa N, Morimoto K, Addrizzo-Harris DJ, O'Donnell AE, Marras TK, Flume PA, Loebinger MR, Morgan L, Codecasa LR, Hill AT, Ruoss SJ, Yim JJ, Ringshausen FC, Field SK, Philley JV, Wallace RJ Jr, van Ingen J, Coulter C, Nezamis J, Winthrop KL; CONVERT Study Group.

Am J Respir Crit Care Med. 2018 Dec 15;198(12):1559-1569. doi: 10.1164/rccm.201807-1318OC.


Mycobacterium decipiens sp. nov., a new species closely related to the Mycobacterium tuberculosis complex.

Brown-Elliott BA, Simmer PJ, Trovato A, Hyle EP, Droz S, Buckwalter SP, Borroni E, Branda JA, Iana E, Mariottini A, Nelson J, Matteelli A, Toney NC, Scarparo C, de Man TJB, Vasireddy R, Gandhi RT, Wengenack NL, Cirillo DM, Wallace RJ, Tortoli E.

Int J Syst Evol Microbiol. 2018 Nov;68(11):3557-3562. doi: 10.1099/ijsem.0.003031. Epub 2018 Sep 11.


In Vitro Susceptibility Testing of a Novel Benzimidazole, SPR719, against Nontuberculous Mycobacteria.

Brown-Elliott BA, Rubio A, Wallace RJ Jr.

Antimicrob Agents Chemother. 2018 Oct 24;62(11). pii: e01503-18. doi: 10.1128/AAC.01503-18. Print 2018 Nov.


Sputum Detection of Predisposing Genetic Mutations in Women with Pulmonary Nontuberculous Mycobacterial Disease.

Philley JV, Hertweck KL, Kannan A, Brown-Elliott BA, Wallace RJ Jr, Kurdowska A, Ndetan H, Singh KP, Miller EJ, Griffith DE, Dasgupta S.

Sci Rep. 2018 Jul 27;8(1):11336. doi: 10.1038/s41598-018-29471-x.


Performance of Vitek MS v3.0 for Identification of Mycobacterium Species from Patient Samples by Use of Automated Liquid Medium Systems.

Miller E, Cantrell C, Beard M, Derylak A, Babady NE, McMillen T, Miranda E, Body B, Tang YW, Vasireddy R, Vasireddy S, Smith T, Iakhiaeva E, Wallace RJ Jr, Brown-Elliott BA, Moreno E, Totty H, Deol P.

J Clin Microbiol. 2018 Jul 26;56(8). pii: e00219-18. doi: 10.1128/JCM.00219-18. Print 2018 Aug.


Evaluation of the Vitek MS v3.0 Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry System for Identification of Mycobacterium and Nocardia Species.

Body BA, Beard MA, Slechta ES, Hanson KE, Barker AP, Babady NE, McMillen T, Tang YW, Brown-Elliott BA, Iakhiaeva E, Vasireddy R, Vasireddy S, Smith T, Wallace RJ Jr, Turner S, Curtis L, Butler-Wu S, Rychert J.

J Clin Microbiol. 2018 May 25;56(6). pii: e00237-18. doi: 10.1128/JCM.00237-18. Print 2018 Jun.


From Tension to Compression: Asymmetric Mechanical Behaviour of Trabecular Bone's Organic Phase.

Xie S, Wallace RJ, Callanan A, Pankaj P.

Ann Biomed Eng. 2018 Jun;46(6):801-809. doi: 10.1007/s10439-018-2009-7. Epub 2018 Mar 27.


Treatment outcome definitions in nontuberculous mycobacterial pulmonary disease: an NTM-NET consensus statement.

van Ingen J, Aksamit T, Andrejak C, Böttger EC, Cambau E, Daley CL, Griffith DE, Guglielmetti L, Holland SM, Huitt GA, Koh WJ, Lange C, Leitman P, Marras TK, Morimoto K, Olivier KN, Santin M, Stout JE, Thomson R, Tortoli E, Wallace RJ Jr, Winthrop KL, Wagner D; for NTM-NET.

Eur Respir J. 2018 Mar 22;51(3). pii: 1800170. doi: 10.1183/13993003.00170-2018. Print 2018 Mar. No abstract available.


Adipose specific disruption of seipin causes early-onset generalised lipodystrophy and altered fuel utilisation without severe metabolic disease.

Mcilroy GD, Suchacki K, Roelofs AJ, Yang W, Fu Y, Bai B, Wallace RJ, De Bari C, Cawthorn WP, Han W, Delibegović M, Rochford JJ.

Mol Metab. 2018 Apr;10:55-65. doi: 10.1016/j.molmet.2018.01.019. Epub 2018 Jan 31.


Effect of dietary fish oil supplements alone or in combination with sunflower and linseed oil on ruminal lipid metabolism and bacterial populations in lactating cows.

Kairenius P, Leskinen H, Toivonen V, Muetzel S, Ahvenjärvi S, Vanhatalo A, Huhtanen P, Wallace RJ, Shingfield KJ.

J Dairy Sci. 2018 Apr;101(4):3021-3035. doi: 10.3168/jds.2017-13776. Epub 2018 Feb 7.


Disseminated actinomycetoma due to Nocardia wallacei.

Welsh O, Salinas-Carmona MC, Brown-Elliott BA, Smith T, Cardenas-De La Garza JA, Wallace RJ Jr.

Int J Dermatol. 2018 May;57(5):580-582. doi: 10.1111/ijd.13909. Epub 2018 Feb 5.


Identification, Comparison, and Validation of Robust Rumen Microbial Biomarkers for Methane Emissions Using Diverse Bos Taurus Breeds and Basal Diets.

Auffret MD, Stewart R, Dewhurst RJ, Duthie CA, Rooke JA, Wallace RJ, Freeman TC, Snelling TJ, Watson M, Roehe R.

Front Microbiol. 2018 Jan 9;8:2642. doi: 10.3389/fmicb.2017.02642. eCollection 2017.


Mycobacterium abscessus, a taxonomic puzzle.

Tortoli E, Kohl TA, Brown-Elliott BA, Trovato A, Cardoso-Leão S, Garcia MJ, Vasireddy S, Turenne CY, Griffith DE, Philley JV, Niemann S, Wallace RJ, Cirillo DM.

Int J Syst Evol Microbiol. 2018 Jan;68(1):467-469. doi: 10.1099/ijsem.0.002457. Epub 2017 Nov 15. No abstract available.


αv integrins on mesenchymal cells regulate skeletal and cardiac muscle fibrosis.

Murray IR, Gonzalez ZN, Baily J, Dobie R, Wallace RJ, Mackinnon AC, Smith JR, Greenhalgh SN, Thompson AI, Conroy KP, Griggs DW, Ruminski PG, Gray GA, Singh M, Campbell MA, Kendall TJ, Dai J, Li Y, Iredale JP, Simpson H, Huard J, Péault B, Henderson NC.

Nat Commun. 2017 Oct 24;8(1):1118. doi: 10.1038/s41467-017-01097-z.


Mycobacterium grossiae sp. nov., a rapidly growing, scotochromogenic species isolated from human clinical respiratory and blood culture specimens.

Paniz-Mondolfi AE, Greninger AL, Ladutko L, Brown-Elliott BA, Vasireddy R, Jakubiec W, Vasireddy S, Wallace RJ Jr, Simmon KE, Dunn BE, Jackoway G, Vora SB, Quinn KK, Qin X, Campbell S.

Int J Syst Evol Microbiol. 2017 Nov;67(11):4345-4351. doi: 10.1099/ijsem.0.002216. Epub 2017 Oct 6.


Biomechanical Comparison of Intramedullary Fibular Nail Versus Plate and Screw Fixation.

Smith G, Mackenzie SP, Wallace RJ, Carter T, White TO.

Foot Ankle Int. 2017 Dec;38(12):1394-1399. doi: 10.1177/1071100717731757. Epub 2017 Oct 3.


In Vitro Susceptibility Testing of Tedizolid against Isolates of Nocardia.

Brown-Elliott BA, Wallace RJ Jr.

Antimicrob Agents Chemother. 2017 Nov 22;61(12). pii: e01537-17. doi: 10.1128/AAC.01537-17. Print 2017 Dec.


Taxon abundance, diversity, co-occurrence and network analysis of the ruminal microbiota in response to dietary changes in dairy cows.

Tapio I, Fischer D, Blasco L, Tapio M, Wallace RJ, Bayat AR, Ventto L, Kahala M, Negussie E, Shingfield KJ, Vilkki J.

PLoS One. 2017 Jul 13;12(7):e0180260. doi: 10.1371/journal.pone.0180260. eCollection 2017.


In Vitro Susceptibility Testing of Tedizolid against Nontuberculous Mycobacteria.

Brown-Elliott BA, Wallace RJ Jr.

J Clin Microbiol. 2017 Jun;55(6):1747-1754. doi: 10.1128/JCM.00274-17. Epub 2017 Mar 22.


A Review of Bioinformatics Tools for Bio-Prospecting from Metagenomic Sequence Data.

Roumpeka DD, Wallace RJ, Escalettes F, Fotheringham I, Watson M.

Front Genet. 2017 Mar 6;8:23. doi: 10.3389/fgene.2017.00023. eCollection 2017. Review.


Erratum to: Application of meta-omics techniques to understand greenhouse gas emissions originating from ruminal metabolism.

Wallace RJ, Snelling TJ, McCartney CA, Tapio I, Strozzi F.

Genet Sel Evol. 2017 Feb 28;49(1):27. doi: 10.1186/s12711-017-0304-7. No abstract available.


The impact of divergent breed types and diets on methane emissions, rumen characteristics and performance of finishing beef cattle.

Duthie CA, Haskell M, Hyslop JJ, Waterhouse A, Wallace RJ, Roehe R, Rooke JA.

Animal. 2017 Oct;11(10):1762-1771. doi: 10.1017/S1751731117000301. Epub 2017 Feb 22.


Exosome secretome and mediated signaling in breast cancer patients with nontuberculous mycobacterial disease.

Philley JV, Kannan A, Griffith DE, Devine MS, Benwill JL, Wallace RJ Jr, Brown-Elliott BA, Thakkar F, Taskar V, Fox JG, Alqaid A, Bains H, Gupta S, Dasgupta S.

Oncotarget. 2017 Mar 14;8(11):18070-18081. doi: 10.18632/oncotarget.14964.


Time Dependent Behaviour of Trabecular Bone at Multiple Load Levels.

Xie S, Manda K, Wallace RJ, Levrero-Florencio F, Simpson AHRW, Pankaj P.

Ann Biomed Eng. 2017 May;45(5):1219-1226. doi: 10.1007/s10439-017-1800-1. Epub 2017 Jan 27.


The ruminal microbiome associated with methane emissions from ruminant livestock.

Tapio I, Snelling TJ, Strozzi F, Wallace RJ.

J Anim Sci Biotechnol. 2017 Jan 19;8:7. doi: 10.1186/s40104-017-0141-0. eCollection 2017. Review.


Application of meta-omics techniques to understand greenhouse gas emissions originating from ruminal metabolism.

Wallace RJ, Snelling TJ, McCartney CA, Tapio I, Strozzi F.

Genet Sel Evol. 2017 Jan 16;49(1):9. doi: 10.1186/s12711-017-0285-6. Review. Erratum in: Genet Sel Evol. 2017 Feb 28;49(1):27.


Two-Phase Hospital-Associated Outbreak of Mycobacterium abscessus: Investigation and Mitigation.

Baker AW, Lewis SS, Alexander BD, Chen LF, Wallace RJ Jr, Brown-Elliott BA, Isaacs PJ, Pickett LC, Patel CB, Smith PK, Reynolds JM, Engel J, Wolfe CR, Milano CA, Schroder JN, Davis RD, Hartwig MG, Stout JE, Strittholt N, Maziarz EK, Saullo JH, Hazen KC, Walczak RJ Jr, Vasireddy R, Vasireddy S, McKnight CM, Anderson DJ, Sexton DJ.

Clin Infect Dis. 2017 Apr 1;64(7):902-911. doi: 10.1093/cid/ciw877.


The rumen microbial metaproteome as revealed by SDS-PAGE.

Snelling TJ, Wallace RJ.

BMC Microbiol. 2017 Jan 7;17(1):9. doi: 10.1186/s12866-016-0917-y.


Emergence of mmpT5 Variants during Bedaquiline Treatment of Mycobacterium intracellulare Lung Disease.

Alexander DC, Vasireddy R, Vasireddy S, Philley JV, Brown-Elliott BA, Perry BJ, Griffith DE, Benwill JL, Cameron AD, Wallace RJ Jr.

J Clin Microbiol. 2017 Feb;55(2):574-584. doi: 10.1128/JCM.02087-16. Epub 2016 Dec 7.


Correction: Environmental Nontuberculous Mycobacteria in the Hawaiian Islands.

Honda JR, Hasan NA, Davidson RM, Williams MD, Epperson LE, Reynolds PR, Smith T, Iakhiaeva E, Bankowski MJ, Wallace RJ Jr, Chan ED, Falkinham JO 3rd, Strong M.

PLoS Negl Trop Dis. 2016 Dec 2;10(12):e0005200. doi: 10.1371/journal.pntd.0005200. eCollection 2016 Dec.


In Vitro Susceptibility Testing of Bedaquiline against Mycobacterium avium Complex.

Brown-Elliott BA, Philley JV, Griffith DE, Thakkar F, Wallace RJ Jr.

Antimicrob Agents Chemother. 2017 Jan 24;61(2). pii: e01798-16. doi: 10.1128/AAC.01798-16. Print 2017 Feb.


Environmental Nontuberculous Mycobacteria in the Hawaiian Islands.

Honda JR, Hasan NA, Davidson RM, Williams MD, Epperson LE, Reynolds PR, Smith T, Iakhiaeva E, Bankowski MJ, Wallace RJ Jr, Chan ED, Falkinham JO 3rd, Strong M.

PLoS Negl Trop Dis. 2016 Oct 25;10(10):e0005068. doi: 10.1371/journal.pntd.0005068. eCollection 2016 Oct. Erratum in: PLoS Negl Trop Dis. 2016 Dec 2;10 (12 ):e0005200.

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