Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 107

1.

Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues.

Meehan CJ, Goig GA, Kohl TA, Verboven L, Dippenaar A, Ezewudo M, Farhat MR, Guthrie JL, Laukens K, Miotto P, Ofori-Anyinam B, Dreyer V, Supply P, Suresh A, Utpatel C, van Soolingen D, Zhou Y, Ashton PM, Brites D, Cabibbe AM, de Jong BC, de Vos M, Menardo F, Gagneux S, Gao Q, Heupink TH, Liu Q, Loiseau C, Rigouts L, Rodwell TC, Tagliani E, Walker TM, Warren RM, Zhao Y, Zignol M, Schito M, Gardy J, Cirillo DM, Niemann S, Comas I, Van Rie A.

Nat Rev Microbiol. 2019 Jun 17. doi: 10.1038/s41579-019-0214-5. [Epub ahead of print] Review.

PMID:
31209399
2.

Comprehensive review of the research employing the schizophrenia cognition rating scale (SCoRS).

Harvey PD, Khan A, Atkins A, Walker TM, Keefe RSE.

Schizophr Res. 2019 Jun 10. pii: S0920-9964(19)30217-8. doi: 10.1016/j.schres.2019.05.040. [Epub ahead of print]

3.

Building the framework for standardized clinical laboratory reporting of next generation sequencing data for resistance-associated mutations in Mycobacterium tuberculosis complex.

Tornheim JA, Starks AM, Rodwell TC, Gardy JL, Walker TM, Cirillo DM, Jayashankar L, Miotto P, Zignol M, Schito M.

Clin Infect Dis. 2019 Mar 18. pii: ciz219. doi: 10.1093/cid/ciz219. [Epub ahead of print]

PMID:
30883637
4.

DeepAMR for predicting co-occurrent resistance of Mycobacterium tuberculosis.

Walker TM, Walker AS, Wilson DJ, Peto TEA, Crook DW, Shamout F; CRyPTIC consortium, Zhu T, Clifton DA.

Bioinformatics. 2019 Jan 28. doi: 10.1093/bioinformatics/btz067. [Epub ahead of print]

PMID:
30689732
5.

Application of machine learning techniques to tuberculosis drug resistance analysis.

Kouchaki S, Yang Y, Walker TM, Walker AS, Wilson DJ, Peto TEA, Crook DW, Clifton DA; CRyPTIC consortium.

Bioinformatics. 2018 Nov 21. doi: 10.1093/bioinformatics/bty949. [Epub ahead of print]

PMID:
30462147
6.

A Cohort Study of the Milk Microbiota of Healthy and Inflamed Bovine Mammary Glands From Dryoff Through 150 Days in Milk.

Metzger SA, Hernandez LL, Skarlupka JH, Walker TM, Suen G, Ruegg PL.

Front Vet Sci. 2018 Oct 9;5:247. doi: 10.3389/fvets.2018.00247. eCollection 2018.

7.

Automated detection of bacterial growth on 96-well plates for high-throughput drug susceptibility testing of Mycobacterium tuberculosis.

Fowler PW, Gibertoni Cruz AL, Hoosdally SJ, Jarrett L, Borroni E, Chiacchiaretta M, Rathod P, Lehmann S, Molodtsov N, Walker TM, Robinson E, Hoffmann H, Peto TEA, Cirillo DM, Smith GE, Crook DW.

Microbiology. 2018 Dec;164(12):1522-1530. doi: 10.1099/mic.0.000733. Epub 2018 Oct 23.

PMID:
30351270
8.

Pathogen-based precision medicine for drug-resistant tuberculosis.

Gröschel MI, Walker TM, van der Werf TS, Lange C, Niemann S, Merker M.

PLoS Pathog. 2018 Oct 18;14(10):e1007297. doi: 10.1371/journal.ppat.1007297. eCollection 2018 Oct. No abstract available.

9.

Prediction of Susceptibility to First-Line Tuberculosis Drugs by DNA Sequencing.

CRyPTIC Consortium and the 100,000 Genomes Project, Allix-Béguec C, Arandjelovic I, Bi L, Beckert P, Bonnet M, Bradley P, Cabibbe AM, Cancino-Muñoz I, Caulfield MJ, Chaiprasert A, Cirillo DM, Clifton DA, Comas I, Crook DW, De Filippo MR, de Neeling H, Diel R, Drobniewski FA, Faksri K, Farhat MR, Fleming J, Fowler P, Fowler TA, Gao Q, Gardy J, Gascoyne-Binzi D, Gibertoni-Cruz AL, Gil-Brusola A, Golubchik T, Gonzalo X, Grandjean L, He G, Guthrie JL, Hoosdally S, Hunt M, Iqbal Z, Ismail N, Johnston J, Khanzada FM, Khor CC, Kohl TA, Kong C, Lipworth S, Liu Q, Maphalala G, Martinez E, Mathys V, Merker M, Miotto P, Mistry N, Moore DAJ, Murray M, Niemann S, Omar SV, Ong RT, Peto TEA, Posey JE, Prammananan T, Pym A, Rodrigues C, Rodrigues M, Rodwell T, Rossolini GM, Sánchez Padilla E, Schito M, Shen X, Shendure J, Sintchenko V, Sloutsky A, Smith EG, Snyder M, Soetaert K, Starks AM, Supply P, Suriyapol P, Tahseen S, Tang P, Teo YY, Thuong TNT, Thwaites G, Tortoli E, van Soolingen D, Walker AS, Walker TM, Wilcox M, Wilson DJ, Wyllie D, Yang Y, Zhang H, Zhao Y, Zhu B.

N Engl J Med. 2018 Oct 11;379(15):1403-1415. doi: 10.1056/NEJMoa1800474. Epub 2018 Sep 26.

10.

Basic auditory processing deficits and their association with auditory emotion recognition in schizophrenia.

Kraus MS, Walker TM, Jarskog LF, Millet RA, Keefe RSE.

Schizophr Res. 2019 Feb;204:155-161. doi: 10.1016/j.schres.2018.08.031. Epub 2018 Sep 27.

PMID:
30268821
11.

Whole genome sequencing of Mycobacterium tuberculosis.

Cabibbe AM, Walker TM, Niemann S, Cirillo DM.

Eur Respir J. 2018 Nov 1;52(5). pii: 1801163. doi: 10.1183/13993003.01163-2018. Print 2018 Nov. No abstract available.

PMID:
30209198
12.

Validating a 14-Drug Microtiter Plate Containing Bedaquiline and Delamanid for Large-Scale Research Susceptibility Testing of Mycobacterium tuberculosis.

Rancoita PMV, Cugnata F, Gibertoni Cruz AL, Borroni E, Hoosdally SJ, Walker TM, Grazian C, Davies TJ, Peto TEA, Crook DW, Fowler PW, Cirillo DM; CRyPTIC Consortiumfor the CRyPTIC Consortiumfor the CRyPTIC Consortium.

Antimicrob Agents Chemother. 2018 Aug 27;62(9). pii: e00344-18. doi: 10.1128/AAC.00344-18. Print 2018 Sep.

13.

The use of whole-genome sequencing in cluster investigation of a multidrug-resistant tuberculosis outbreak.

Lalor MK, Casali N, Walker TM, Anderson LF, Davidson JA, Ratna N, Mullarkey C, Gent M, Foster K, Brown T, Magee J, Barrett A, Crook DW, Drobniewski F, Thomas HL, Abubakar I.

Eur Respir J. 2018 Jun 21;51(6). pii: 1702313. doi: 10.1183/13993003.02313-2017. Print 2018 Jun.

PMID:
29748309
14.

Influence of sampling technique and bedding type on the milk microbiota: Results of a pilot study.

Metzger SA, Hernandez LL, Skarlupka JH, Suen G, Walker TM, Ruegg PL.

J Dairy Sci. 2018 Jul;101(7):6346-6356. doi: 10.3168/jds.2017-14212. Epub 2018 Apr 19.

PMID:
29680645
15.

A cluster of multidrug-resistant Mycobacterium tuberculosis among patients arriving in Europe from the Horn of Africa: a molecular epidemiological study.

Walker TM, Merker M, Knoblauch AM, Helbling P, Schoch OD, van der Werf MJ, Kranzer K, Fiebig L, Kröger S, Haas W, Hoffmann H, Indra A, Egli A, Cirillo DM, Robert J, Rogers TR, Groenheit R, Mengshoel AT, Mathys V, Haanperä M, Soolingen DV, Niemann S, Böttger EC, Keller PM; MDR-TB Cluster Consortium.

Lancet Infect Dis. 2018 Apr;18(4):431-440. doi: 10.1016/S1473-3099(18)30004-5. Epub 2018 Jan 8. Erratum in: Lancet Infect Dis. 2018 Jan 10;:.

16.

Machine learning for classifying tuberculosis drug-resistance from DNA sequencing data.

Yang Y, Niehaus KE, Walker TM, Iqbal Z, Walker AS, Wilson DJ, Peto TEA, Crook DW, Smith EG, Zhu T, Clifton DA.

Bioinformatics. 2018 May 15;34(10):1666-1671. doi: 10.1093/bioinformatics/btx801.

17.

Aiming for zero tuberculosis transmission in low-burden countries.

Marais BJ, Walker TM, Cirillo DM, Raviglione M, Abubakar I, van der Werf MJ, Boehme C, Niemann S, Castro KG, Zumla A, Sintchenko V, Crook DW.

Lancet Respir Med. 2017 Nov;5(11):846-848. doi: 10.1016/S2213-2600(17)30382-X. Epub 2017 Oct 13. No abstract available.

PMID:
29033268
18.

Whole-genome sequencing identifies nosocomial transmission of extra-pulmonary M. tuberculosis-response.

Walker TM, Crook DW, Peto TEA, Conlon CP.

QJM. 2017 Sep 1;110(9):613. doi: 10.1093/qjmed/hcx116. No abstract available.

PMID:
28911030
19.

Efficacy of nepafenac ophthalmic suspension 0.1% in improving clinical outcomes following cataract surgery in patients with diabetes: an analysis of two randomized studies.

Singh RP, Staurenghi G, Pollack A, Adewale A, Walker TM, Sager D, Lehmann R.

Clin Ophthalmol. 2017 May 29;11:1021-1029. doi: 10.2147/OPTH.S132030. eCollection 2017.

20.

Tuberculosis is changing.

Walker TM, Cruz ALG, Peto TE, Smith EG, Esmail H, Crook DW.

Lancet Infect Dis. 2017 Apr;17(4):359-361. doi: 10.1016/S1473-3099(17)30123-8. Epub 2017 Mar 13. No abstract available.

PMID:
28298254
21.

Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples.

Votintseva AA, Bradley P, Pankhurst L, Del Ojo Elias C, Loose M, Nilgiriwala K, Chatterjee A, Smith EG, Sanderson N, Walker TM, Morgan MR, Wyllie DH, Walker AS, Peto TEA, Crook DW, Iqbal Z.

J Clin Microbiol. 2017 May;55(5):1285-1298. doi: 10.1128/JCM.02483-16. Epub 2017 Mar 8.

22.

Some Synonymous and Nonsynonymous gyrA Mutations in Mycobacterium tuberculosis Lead to Systematic False-Positive Fluoroquinolone Resistance Results with the Hain GenoType MTBDRsl Assays.

Ajileye A, Alvarez N, Merker M, Walker TM, Akter S, Brown K, Moradigaravand D, Schön T, Andres S, Schleusener V, Omar SV, Coll F, Huang H, Diel R, Ismail N, Parkhill J, de Jong BC, Peto TE, Crook DW, Niemann S, Robledo J, Smith EG, Peacock SJ, Köser CU.

Antimicrob Agents Chemother. 2017 Mar 24;61(4). pii: e02169-16. doi: 10.1128/AAC.02169-16. Print 2017 Apr.

23.

Whole-genome sequencing identifies nosocomial transmission of extra-pulmonary M. tuberculosis.

Walker TM, Crook DW, Peto TE, Conlon CP.

QJM. 2016 Dec;109(12):819-820. doi: 10.1093/qjmed/hcw202. Epub 2016 Dec 22. No abstract available.

24.

Whole genome sequencing for M/XDR tuberculosis surveillance and for resistance testing.

Walker TM, Merker M, Kohl TA, Crook DW, Niemann S, Peto TE.

Clin Microbiol Infect. 2017 Mar;23(3):161-166. doi: 10.1016/j.cmi.2016.10.014. Epub 2016 Oct 24. Review.

25.

What is the value of the SAGES/AORN MIS checklist? A multi-institutional practical assessment.

Benham E, Richardson W, Dort J, Lin H, Tummers AM, Walker TM, Stefanidis D.

Surg Endosc. 2017 Apr;31(4):1821-1827. doi: 10.1007/s00464-016-5179-0. Epub 2016 Sep 7.

PMID:
27604364
26.

Identifying lineage effects when controlling for population structure improves power in bacterial association studies.

Earle SG, Wu CH, Charlesworth J, Stoesser N, Gordon NC, Walker TM, Spencer CCA, Iqbal Z, Clifton DA, Hopkins KL, Woodford N, Smith EG, Ismail N, Llewelyn MJ, Peto TE, Crook DW, McVean G, Walker AS, Wilson DJ.

Nat Microbiol. 2016 Apr 4;1:16041. doi: 10.1038/nmicrobiol.2016.41.

27.

Corrigendum: Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis.

Bradley P, Gordon NC, Walker TM, Dunn L, Heys S, Huang B, Earle S, Pankhurst LJ, Anson L, de Cesare M, Piazza P, Votintseva AA, Golubchik T, Wilson DJ, Wyllie DH, Diel R, Niemann S, Feuerriegel S, Kohl TA, Ismail N, Omar SV, Smith EG, Buck D, McVean G, Walker AS, Peto TE, Crook DW, Iqbal Z.

Nat Commun. 2016 Apr 20;7:11465. doi: 10.1038/ncomms11465. No abstract available.

28.

Characterization and Antimicrobial Activity of Volatile Constituents from Fresh Fruits of Alchornea cordifolia and Canthium subcordatum.

Essien EE, Newby JS, Walker TM, Setzer WN, Ekundayo O.

Medicines (Basel). 2015 Dec 29;3(1). pii: E1. doi: 10.3390/medicines3010001.

29.

Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis.

Bradley P, Gordon NC, Walker TM, Dunn L, Heys S, Huang B, Earle S, Pankhurst LJ, Anson L, de Cesare M, Piazza P, Votintseva AA, Golubchik T, Wilson DJ, Wyllie DH, Diel R, Niemann S, Feuerriegel S, Kohl TA, Ismail N, Omar SV, Smith EG, Buck D, McVean G, Walker AS, Peto TE, Crook DW, Iqbal Z.

Nat Commun. 2015 Dec 21;6:10063. doi: 10.1038/ncomms10063. Erratum in: Nat Commun. 2016;7:11465.

30.

Chemotaxonomic Characterization and in-Vitro Antimicrobial and Cytotoxic Activities of the Leaf Essential Oil of Curcuma longa Grown in Southern Nigeria.

Essien EE, Newby JS, Walker TM, Setzer WN, Ekundayo O.

Medicines (Basel). 2015 Dec 21;2(4):340-349. doi: 10.3390/medicines2040340.

31.

Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study.

Pankhurst LJ, Del Ojo Elias C, Votintseva AA, Walker TM, Cole K, Davies J, Fermont JM, Gascoyne-Binzi DM, Kohl TA, Kong C, Lemaitre N, Niemann S, Paul J, Rogers TR, Roycroft E, Smith EG, Supply P, Tang P, Wilcox MH, Wordsworth S, Wyllie D, Xu L, Crook DW; COMPASS-TB Study Group.

Lancet Respir Med. 2016 Jan;4(1):49-58. doi: 10.1016/S2213-2600(15)00466-X. Epub 2015 Dec 4.

32.

Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study.

Walker TM, Kohl TA, Omar SV, Hedge J, Del Ojo Elias C, Bradley P, Iqbal Z, Feuerriegel S, Niehaus KE, Wilson DJ, Clifton DA, Kapatai G, Ip CLC, Bowden R, Drobniewski FA, Allix-Béguec C, Gaudin C, Parkhill J, Diel R, Supply P, Crook DW, Smith EG, Walker AS, Ismail N, Niemann S, Peto TEA; Modernizing Medical Microbiology (MMM) Informatics Group.

Lancet Infect Dis. 2015 Oct;15(10):1193-1202. doi: 10.1016/S1473-3099(15)00062-6. Epub 2015 Jun 23. Erratum in: Lancet Infect Dis. 2017 Nov 21;:.

33.

Adjunctive Minocycline in Clozapine-Treated Schizophrenia Patients With Persistent Symptoms.

Kelly DL, Sullivan KM, McEvoy JP, McMahon RP, Wehring HJ, Gold JM, Liu F, Warfel D, Vyas G, Richardson CM, Fischer BA, Keller WR, Koola MM, Feldman SM, Russ JC, Keefe RS, Osing J, Hubzin L, August S, Walker TM, Buchanan RW.

J Clin Psychopharmacol. 2015 Aug;35(4):374-81. doi: 10.1097/JCP.0000000000000345.

34.

Mycobacterial DNA extraction for whole-genome sequencing from early positive liquid (MGIT) cultures.

Votintseva AA, Pankhurst LJ, Anson LW, Morgan MR, Gascoyne-Binzi D, Walker TM, Quan TP, Wyllie DH, Del Ojo Elias C, Wilcox M, Walker AS, Peto TE, Crook DW.

J Clin Microbiol. 2015 Apr;53(4):1137-43. doi: 10.1128/JCM.03073-14. Epub 2015 Jan 28.

35.

The Brief Assessment of Cognition In Affective Disorders (BAC-A):performance of patients with bipolar depression and healthy controls.

Keefe RS, Fox KH, Davis VG, Kennel C, Walker TM, Burdick KE, Harvey PD.

J Affect Disord. 2014 Sep;166:86-92. doi: 10.1016/j.jad.2014.05.002. Epub 2014 May 11.

PMID:
25012414
36.

Assessment of Mycobacterium tuberculosis transmission in Oxfordshire, UK, 2007-12, with whole pathogen genome sequences: an observational study.

Walker TM, Lalor MK, Broda A, Ortega LS, Morgan M, Parker L, Churchill S, Bennett K, Golubchik T, Giess AP, Del Ojo Elias C, Jeffery KJ, Bowler ICJW, Laurenson IF, Barrett A, Drobniewski F, McCarthy ND, Anderson LF, Abubakar I, Thomas HL, Monk P, Smith EG, Walker AS, Crook DW, Peto TEA, Conlon CP.

Lancet Respir Med. 2014 Apr;2(4):285-292. doi: 10.1016/S2213-2600(14)70027-X. Epub 2014 Mar 4.

37.

Using augmented reality as a clinical support tool to assist combat medics in the treatment of tension pneumothoraces.

Wilson KL, Doswell JT, Fashola OS, Debeatham W, Darko N, Walker TM, Danner OK, Matthews LR, Weaver WL.

Mil Med. 2013 Sep;178(9):981-5. doi: 10.7205/MILMED-D-13-00074.

PMID:
24005547
38.

Experience with total thyroidectomy for massive multinodular goiter.

Walker TM, Fortson JK, Patel VG.

Am Surg. 2013 Aug;79(8):854-6. No abstract available.

PMID:
23896257
39.

Genomics and outbreak investigation: from sequence to consequence.

Robinson ER, Walker TM, Pallen MJ.

Genome Med. 2013 Apr 29;5(4):36. doi: 10.1186/gm440. eCollection 2013. Review.

40.

Contact investigations for outbreaks of Mycobacterium tuberculosis: advances through whole genome sequencing.

Walker TM, Monk P, Smith EG, Peto TE.

Clin Microbiol Infect. 2013 Sep;19(9):796-802. doi: 10.1111/1469-0691.12183. Epub 2013 Feb 21. Review.

41.

Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study.

Walker TM, Ip CL, Harrell RH, Evans JT, Kapatai G, Dedicoat MJ, Eyre DW, Wilson DJ, Hawkey PM, Crook DW, Parkhill J, Harris D, Walker AS, Bowden R, Monk P, Smith EG, Peto TE.

Lancet Infect Dis. 2013 Feb;13(2):137-46. doi: 10.1016/S1473-3099(12)70277-3. Epub 2012 Nov 15.

42.

Standardizing the use of the Continuous Performance Test in schizophrenia research: a validation study.

Kahn PV, Walker TM, Williams TS, Cornblatt BA, Mohs RC, Keefe RS.

Schizophr Res. 2012 Dec;142(1-3):153-8. doi: 10.1016/j.schres.2012.09.009. Epub 2012 Oct 3.

PMID:
23040735
43.

Benefit of a Tiered-Trauma Activation System to Triage Dead-on-Arrival Patients.

Danner OK, Wilson KL, Heron S, Ahmed Y, Walker TM, Houry D, Haley LL Jr, Matthews LR.

West J Emerg Med. 2012 Aug;13(3):225-9. doi: 10.5811/westjem.2012.3.11781.

44.

Feasibility and pilot efficacy results from the multisite Cognitive Remediation in the Schizophrenia Trials Network (CRSTN) randomized controlled trial.

Keefe RS, Vinogradov S, Medalia A, Buckley PF, Caroff SN, D'Souza DC, Harvey PD, Graham KA, Hamer RM, Marder SM, Miller DD, Olson SJ, Patel JK, Velligan D, Walker TM, Haim AJ, Stroup TS.

J Clin Psychiatry. 2012 Jul;73(7):1016-22. doi: 10.4088/JCP.11m07100. Epub 2012 May 15.

45.

A phytochemical investigation of Zanthoxylum setulosum.

Walker TM, Vogler B, Moriarity DM, Haber WA, Setzer WN.

Nat Prod Commun. 2011 Dec;6(12):1807-8.

PMID:
22312711
46.

Mind-mindedness in parents of pre-schoolers: a comparison between clinical and community samples.

Walker TM, Wheatcroft R, Camic PM.

Clin Child Psychol Psychiatry. 2012 Jul;17(3):318-35. doi: 10.1177/1359104511409142. Epub 2011 Aug 18.

PMID:
21852322
47.

Presentation and minimally invasive treatment of a type IV giant paraesophageal hernia.

Rosser JC, Rowe L, Kim JL, Walker TM.

J Natl Med Assoc. 2011 Jan;103(1):68-71.

PMID:
21329252
48.

Essential oil constituents and biological activities of Peristrophe bicalyculata and Borreria verticillata.

Ogunwande IA, Walker TM, Bansal A, Setzer WN, Essien EE.

Nat Prod Commun. 2010 Nov;5(11):1815-8.

PMID:
21213989
49.

Doxorubicin in vivo rapidly alters expression and translation of myocardial electron transport chain genes, leads to ATP loss and caspase 3 activation.

Pointon AV, Walker TM, Phillips KM, Luo J, Riley J, Zhang SD, Parry JD, Lyon JJ, Marczylo EL, Gant TW.

PLoS One. 2010 Sep 15;5(9):e12733. doi: 10.1371/journal.pone.0012733. Erratum in: PLoS One. 2014;9(7):e102278.

50.

Risk factors for recurrence after Staphylococcus aureus bacteraemia. A retrospective matched case-control study.

Walker TM, Bowler IC, Bejon P.

J Infect. 2009 Jun;58(6):411-6. doi: 10.1016/j.jinf.2009.03.011. Epub 2009 Apr 5. Erratum in: J Infect. 2011 Apr;62(4):328.

PMID:
19394703

Supplemental Content

Loading ...
Support Center