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An Oral Inoculation Infant Rabbit Model for Shigella Infection.

Kuehl CJ, D'Gama JD, Warr AR, Waldor MK.

mBio. 2020 Jan 21;11(1). pii: e03105-19. doi: 10.1128/mBio.03105-19.


A Multiorgan Trafficking Circuit Provides Purifying Selection of Listeria monocytogenes Virulence Genes.

Louie A, Zhang T, Becattini S, Waldor MK, Portnoy DA.

mBio. 2019 Dec 17;10(6). pii: e02948-19. doi: 10.1128/mBio.02948-19.


A Conserved Streptococcal Virulence Regulator Controls the Expression of a Distinct Class of M-Like Proteins.

D'Gama JD, Ma Z, Zhang H, Liu X, Fan H, Morris ERA, Cohen ND, Cywes-Bentley C, Pier GB, Waldor MK.

mBio. 2019 Oct 22;10(5). pii: e02500-19. doi: 10.1128/mBio.02500-19.


A Bacterial Pathogen Senses Host Mannose to Coordinate Virulence.

Wei L, Qiao H, Sit B, Yin K, Yang G, Ma R, Ma J, Yang C, Yao J, Ma Y, Xiao J, Liu X, Zhang Y, Waldor MK, Wang Q.

iScience. 2019 Oct 25;20:310-323. doi: 10.1016/j.isci.2019.09.028. Epub 2019 Sep 25.


Transposon-insertion sequencing screens unveil requirements for EHEC growth and intestinal colonization.

Warr AR, Hubbard TP, Munera D, Blondel CJ, Abel Zur Wiesch P, Abel S, Wang X, Davis BM, Waldor MK.

PLoS Pathog. 2019 Aug 12;15(8):e1007652. doi: 10.1371/journal.ppat.1007652. eCollection 2019 Aug.


A Vibrio cholerae BolA-Like Protein Is Required for Proper Cell Shape and Cell Envelope Integrity.

Fleurie A, Zoued A, Alvarez L, Hines KM, Cava F, Xu L, Davis BM, Waldor MK.

mBio. 2019 Jul 9;10(4). pii: e00790-19. doi: 10.1128/mBio.00790-19.


An 'i' for ingenuity.

D'Gama JD, Waldor MK.

Nat Microbiol. 2019 Jul;4(7):1071-1072. doi: 10.1038/s41564-019-0490-x. No abstract available.


A New Suite of Allelic-Exchange Vectors for the Scarless Modification of Proteobacterial Genomes.

Lazarus JE, Warr AR, Kuehl CJ, Giorgio RT, Davis BM, Waldor MK.

Appl Environ Microbiol. 2019 Aug 1;85(16). pii: e00990-19. doi: 10.1128/AEM.00990-19. Print 2019 Aug 15.


Oral immunization with a probiotic cholera vaccine induces broad protective immunity against Vibrio cholerae colonization and disease in mice.

Sit B, Zhang T, Fakoya B, Akter A, Biswas R, Ryan ET, Waldor MK.

PLoS Negl Trop Dis. 2019 May 31;13(5):e0007417. doi: 10.1371/journal.pntd.0007417. eCollection 2019 May.


A streptococcal Fic domain-containing protein disrupts blood-brain barrier integrity by activating moesin in endothelial cells.

Ma Z, Peng J, Yu D, Park JS, Lin H, Xu B, Lu C, Fan H, Waldor MK.

PLoS Pathog. 2019 May 9;15(5):e1007737. doi: 10.1371/journal.ppat.1007737. eCollection 2019 May.


Unsupervised Learning Approach for Comparing Multiple Transposon Insertion Sequencing Studies.

Hubbard TP, D'Gama JD, Billings G, Davis BM, Waldor MK.

mSphere. 2019 Feb 20;4(1). pii: e00031-19. doi: 10.1128/mSphere.00031-19.


The RNA degradosome promotes tRNA quality control through clearance of hypomodified tRNA.

Kimura S, Waldor MK.

Proc Natl Acad Sci U S A. 2019 Jan 22;116(4):1394-1403. doi: 10.1073/pnas.1814130116. Epub 2019 Jan 8.


A FACS-Based Genome-wide CRISPR Screen Reveals a Requirement for COPI in Chlamydia trachomatis Invasion.

Park JS, Helble JD, Lazarus JE, Yang G, Blondel CJ, Doench JG, Starnbach MN, Waldor MK.

iScience. 2019 Jan 25;11:71-84. doi: 10.1016/j.isci.2018.12.011. Epub 2018 Dec 14.


Anaerobic nitrate reduction divergently governs population expansion of the enteropathogen Vibrio cholerae.

Bueno E, Sit B, Waldor MK, Cava F.

Nat Microbiol. 2018 Dec;3(12):1346-1353. doi: 10.1038/s41564-018-0253-0. Epub 2018 Oct 1.


Critical role for a promoter discriminator in RpoS control of virulence in Edwardsiella piscicida.

Yin K, Guan Y, Ma R, Wei L, Liu B, Liu X, Zhou X, Ma Y, Zhang Y, Waldor MK, Wang Q.

PLoS Pathog. 2018 Aug 31;14(8):e1007272. doi: 10.1371/journal.ppat.1007272. eCollection 2018 Aug.


Genetic Determinants of Penicillin Tolerance in Vibrio cholerae.

Weaver AI, Murphy SG, Umans BD, Tallavajhala S, Onyekwere I, Wittels S, Shin JH, VanNieuwenhze M, Waldor MK, Dörr T.

Antimicrob Agents Chemother. 2018 Sep 24;62(10). pii: e01326-18. doi: 10.1128/AAC.01326-18. Print 2018 Oct.


Vibrio spp. infections.

Baker-Austin C, Oliver JD, Alam M, Ali A, Waldor MK, Qadri F, Martinez-Urtaza J.

Nat Rev Dis Primers. 2018 Jul 12;4(1):8. doi: 10.1038/s41572-018-0005-8. Review.


CRISPR Screen Reveals that EHEC's T3SS and Shiga Toxin Rely on Shared Host Factors for Infection.

Pacheco AR, Lazarus JE, Sit B, Schmieder S, Lencer WI, Blondel CJ, Doench JG, Davis BM, Waldor MK.

mBio. 2018 Jun 19;9(3). pii: e01003-18. doi: 10.1128/mBio.01003-18.


A live vaccine rapidly protects against cholera in an infant rabbit model.

Hubbard TP, Billings G, Dörr T, Sit B, Warr AR, Kuehl CJ, Kim M, Delgado F, Mekalanos JJ, Lewnard JA, Waldor MK.

Sci Transl Med. 2018 Jun 13;10(445). pii: eaap8423. doi: 10.1126/scitranslmed.aap8423.


Comprehensive identification of Vibrio vulnificus genes required for growth in human serum.

Carda-Diéguez M, Silva-Hernández FX, Hubbard TP, Chao MC, Waldor MK, Amaro C.

Virulence. 2018 Dec 31;9(1):981-993. doi: 10.1080/21505594.2018.1455464.


Host-specific differences in the contribution of an ESBL IncI1 plasmid to intestinal colonization by Escherichia coli O104:H4.

Giles M, Cawthraw SA, AbuOun M, Thomas CM, Munera D, Waldor MK, La Ragione RM, Ritchie JM.

J Antimicrob Chemother. 2018 Jun 1;73(6):1579-1585. doi: 10.1093/jac/dky037.


The QseG Lipoprotein Impacts the Virulence of Enterohemorrhagic Escherichia coli and Citrobacter rodentium and Regulates Flagellar Phase Variation in Salmonella enterica Serovar Typhimurium.

Cameron EA, Gruber CC, Ritchie JM, Waldor MK, Sperandio V.

Infect Immun. 2018 Mar 22;86(4). pii: e00936-17. doi: 10.1128/IAI.00936-17. Print 2018 Apr.


Serine/threonine kinase PpkA coordinates the interplay between T6SS2 activation and quorum sensing in the marine pathogen Vibrio alginolyticus.

Yang Z, Zhou X, Ma Y, Zhou M, Waldor MK, Zhang Y, Wang Q.

Environ Microbiol. 2018 Feb;20(2):903-919. doi: 10.1111/1462-2920.14039. Epub 2018 Jan 19. Erratum in: Environ Microbiol. 2019 May;21(5):1883.


Mapping the ecological networks of microbial communities.

Xiao Y, Angulo MT, Friedman J, Waldor MK, Weiss ST, Liu YY.

Nat Commun. 2017 Dec 11;8(1):2042. doi: 10.1038/s41467-017-02090-2.


Coupling chemosensory array formation and localization.

Alvarado A, Kjær A, Yang W, Mann P, Briegel A, Waldor MK, Ringgaard S.

Elife. 2017 Oct 23;6. pii: e31058. doi: 10.7554/eLife.31058.


Time-Resolved Transposon Insertion Sequencing Reveals Genome-Wide Fitness Dynamics during Infection.

Yang G, Billings G, Hubbard TP, Park JS, Yin Leung K, Liu Q, Davis BM, Zhang Y, Wang Q, Waldor MK.

mBio. 2017 Oct 3;8(5). pii: e01581-17. doi: 10.1128/mBio.01581-17.


Deciphering the landscape of host barriers to Listeria monocytogenes infection.

Zhang T, Abel S, Abel Zur Wiesch P, Sasabe J, Davis BM, Higgins DE, Waldor MK.

Proc Natl Acad Sci U S A. 2017 Jun 13;114(24):6334-6339. doi: 10.1073/pnas.1702077114. Epub 2017 May 30.


The replication initiator of the cholera pathogen's second chromosome shows structural similarity to plasmid initiators.

Orlova N, Gerding M, Ivashkiv O, Olinares PDB, Chait BT, Waldor MK, Jeruzalmi D.

Nucleic Acids Res. 2017 Apr 20;45(7):3724-3737. doi: 10.1093/nar/gkw1288.


Interplay between microbial d-amino acids and host d-amino acid oxidase modifies murine mucosal defence and gut microbiota.

Sasabe J, Miyoshi Y, Rakoff-Nahoum S, Zhang T, Mita M, Davis BM, Hamase K, Waldor MK.

Nat Microbiol. 2016 Jul 25;1(10):16125. doi: 10.1038/nmicrobiol.2016.125.


The Nucleoid Binding Protein H-NS Biases Genome-Wide Transposon Insertion Landscapes.

Kimura S, Hubbard TP, Davis BM, Waldor MK.

mBio. 2016 Aug 30;7(4). pii: e01351-16. doi: 10.1128/mBio.01351-16.


CRISPR/Cas9 Screens Reveal Requirements for Host Cell Sulfation and Fucosylation in Bacterial Type III Secretion System-Mediated Cytotoxicity.

Blondel CJ, Park JS, Hubbard TP, Pacheco AR, Kuehl CJ, Walsh MJ, Davis BM, Gewurz BE, Doench JG, Waldor MK.

Cell Host Microbe. 2016 Aug 10;20(2):226-37. doi: 10.1016/j.chom.2016.06.010. Epub 2016 Jul 21.


Bacterial Adrenergic Sensors Regulate Virulence of Enteric Pathogens in the Gut.

Moreira CG, Russell R, Mishra AA, Narayanan S, Ritchie JM, Waldor MK, Curtis MM, Winter SE, Weinshenker D, Sperandio V.

mBio. 2016 Jun 7;7(3). pii: e00826-16. doi: 10.1128/mBio.00826-16.


Phosphorylation of Deinococcus radiodurans RecA Regulates Its Activity and May Contribute to Radioresistance.

Rajpurohit YS, Bihani SC, Waldor MK, Misra HS.

J Biol Chem. 2016 Aug 5;291(32):16672-85. doi: 10.1074/jbc.M116.736389. Epub 2016 Jun 2.


A Transposon Screen Identifies Genetic Determinants of Vibrio cholerae Resistance to High-Molecular-Weight Antibiotics.

Dörr T, Delgado F, Umans BD, Gerding MA, Davis BM, Waldor MK.

Antimicrob Agents Chemother. 2016 Jul 22;60(8):4757-63. doi: 10.1128/AAC.00576-16. Print 2016 Aug.


Erratum: Chemoproteomic profiling of host and pathogen enzymes active in cholera.

Hatzios SK, Abel S, Martell J, Hubbard T, Sasabe J, Munera D, Clark L, Bachovchin DA, Qadri F, Ryan ET, Davis BM, Weerapana E, Waldor MK.

Nat Chem Biol. 2016 May 18;12(6):466. doi: 10.1038/nchembio0616-466. No abstract available.


Genetic analysis of Vibrio parahaemolyticus intestinal colonization.

Hubbard TP, Chao MC, Abel S, Blondel CJ, Abel Zur Wiesch P, Zhou X, Davis BM, Waldor MK.

Proc Natl Acad Sci U S A. 2016 May 31;113(22):6283-8. doi: 10.1073/pnas.1601718113. Epub 2016 May 16.


Chemoproteomic profiling of host and pathogen enzymes active in cholera.

Hatzios SK, Abel S, Martell J, Hubbard T, Sasabe J, Munera D, Clark L, Bachovchin DA, Qadri F, Ryan ET, Davis BM, Weerapana E, Waldor MK.

Nat Chem Biol. 2016 Apr;12(4):268-274. doi: 10.1038/nchembio.2025. Epub 2016 Feb 22. Erratum in: Nat Chem Biol. 2016 May 18;12(6):466.


The design and analysis of transposon insertion sequencing experiments.

Chao MC, Abel S, Davis BM, Waldor MK.

Nat Rev Microbiol. 2016 Feb;14(2):119-28. doi: 10.1038/nrmicro.2015.7. Review.


A cell wall damage response mediated by a sensor kinase/response regulator pair enables beta-lactam tolerance.

Dörr T, Alvarez L, Delgado F, Davis BM, Cava F, Waldor MK.

Proc Natl Acad Sci U S A. 2016 Jan 12;113(2):404-9. doi: 10.1073/pnas.1520333113. Epub 2015 Dec 28.


Correction: A Cytosine Methytransferase Modulates the Cell Envelope Stress Response in the Cholera Pathogen.

Chao MC, Zhu S, Kimura S, Davis BM, Schadt EE, Fang G, Waldor MK.

PLoS Genet. 2015 Dec 11;11(12):e1005739. doi: 10.1371/journal.pgen.1005739. eCollection 2015 Dec.


A Cytosine Methyltransferase Modulates the Cell Envelope Stress Response in the Cholera Pathogen [corrected].

Chao MC, Zhu S, Kimura S, Davis BM, Schadt EE, Fang G, Waldor MK.

PLoS Genet. 2015 Nov 20;11(11):e1005666. doi: 10.1371/journal.pgen.1005666. eCollection 2015 Nov. Erratum in: PLoS Genet. 2015 Dec;11(12):e1005739.


Peptidoglycan synthesis in Mycobacterium tuberculosis is organized into networks with varying drug susceptibility.

Kieser KJ, Baranowski C, Chao MC, Long JE, Sassetti CM, Waldor MK, Sacchettini JC, Ioerger TR, Rubin EJ.

Proc Natl Acad Sci U S A. 2015 Oct 20;112(42):13087-92. doi: 10.1073/pnas.1514135112. Epub 2015 Oct 5.


Infant Rabbit Model for Diarrheal Diseases.

Abel S, Waldor MK.

Curr Protoc Microbiol. 2015 Aug 3;38:6A.6.1-15. doi: 10.1002/9780471729259.mc06a06s38.


Molecular Dissection of the Essential Features of the Origin of Replication of the Second Vibrio cholerae Chromosome.

Gerding MA, Chao MC, Davis BM, Waldor MK.

mBio. 2015 Jul 28;6(4):e00973. doi: 10.1128/mBio.00973-15.


A Transmissible Plasmid-Borne Pathogenicity Island Confers Piscibactin Biosynthesis in the Fish Pathogen Photobacterium damselae subsp. piscicida.

Osorio CR, Rivas AJ, Balado M, Fuentes-Monteverde JC, Rodríguez J, Jiménez C, Lemos ML, Waldor MK.

Appl Environ Microbiol. 2015 Sep 1;81(17):5867-79. doi: 10.1128/AEM.01580-15. Epub 2015 Jun 19.


Single molecule-level detection and long read-based phasing of epigenetic variations in bacterial methylomes.

Beaulaurier J, Zhang XS, Zhu S, Sebra R, Rosenbluh C, Deikus G, Shen N, Munera D, Waldor MK, Chess A, Blaser MJ, Schadt EE, Fang G.

Nat Commun. 2015 Jun 15;6:7438. doi: 10.1038/ncomms8438.


Analysis of Bottlenecks in Experimental Models of Infection.

Abel S, Abel zur Wiesch P, Davis BM, Waldor MK.

PLoS Pathog. 2015 Jun 11;11(6):e1004823. doi: 10.1371/journal.ppat.1004823. eCollection 2015 Jun. Review. No abstract available.


A Genome-Wide Screen Reveals that the Vibrio cholerae Phosphoenolpyruvate Phosphotransferase System Modulates Virulence Gene Expression.

Wang Q, Millet YA, Chao MC, Sasabe J, Davis BM, Waldor MK.

Infect Immun. 2015 Sep;83(9):3381-95. doi: 10.1128/IAI.00411-15. Epub 2015 Jun 8.


RpoS and quorum sensing control expression and polar localization of Vibrio cholerae chemotaxis cluster III proteins in vitro and in vivo.

Ringgaard S, Hubbard T, Mandlik A, Davis BM, Waldor MK.

Mol Microbiol. 2015 Aug;97(4):660-75. doi: 10.1111/mmi.13053. Epub 2015 Jun 6.


Classic reaction kinetics can explain complex patterns of antibiotic action.

Abel Zur Wiesch P, Abel S, Gkotzis S, Ocampo P, Engelstädter J, Hinkley T, Magnus C, Waldor MK, Udekwu K, Cohen T.

Sci Transl Med. 2015 May 13;7(287):287ra73. doi: 10.1126/scitranslmed.aaa8760.

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