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Items: 19

1.

Univariate and classification analysis reveals potential diagnostic biomarkers for early stage ovarian cancer Type 1 and Type 2.

Marcišauskas S, Ulfenborg B, Kristjansdottir B, Waldemarson S, Sundfeldt K.

J Proteomics. 2019 Mar 30;196:57-68. doi: 10.1016/j.jprot.2019.01.017. Epub 2019 Jan 30.

PMID:
30710757
2.

Advancing the immunoaffinity platform AFFIRM to targeted measurements of proteins in serum in the pg/ml range.

Säll A, Corbee D, Vikström S, Ottosson F, Persson H, Waldemarson S.

PLoS One. 2018 Feb 13;13(2):e0189116. doi: 10.1371/journal.pone.0189116. eCollection 2018.

3.

Quantitative Mass Spectrometry To Study Inflammatory Cartilage Degradation and Resulting Interactions with the Complement System.

Melin Fürst C, Åhrman E, Bratteby K, Waldemarson S, Malmström J, Blom AM.

J Immunol. 2016 Oct 15;197(8):3415-3424. Epub 2016 Sep 14.

4.

Proteomic analysis of breast tumors confirms the mRNA intrinsic molecular subtypes using different classifiers: a large-scale analysis of fresh frozen tissue samples.

Waldemarson S, Kurbasic E, Krogh M, Cifani P, Berggård T, Borg Å, James P.

Breast Cancer Res. 2016 Jun 29;18(1):69. doi: 10.1186/s13058-016-0732-2.

5.

Development of Phage-Based Antibody Fragment Reagents for Affinity Enrichment of Bacterial Immunoglobulin G Binding Proteins.

Säll A, Sjöholm K, Waldemarson S, Happonen L, Karlsson C, Persson H, Malmström J.

J Proteome Res. 2015 Nov 6;14(11):4704-13. doi: 10.1021/acs.jproteome.5b00585. Epub 2015 Oct 27.

PMID:
26452057
6.

Molecular Portrait of Breast-Cancer-Derived Cell Lines Reveals Poor Similarity with Tumors.

Cifani P, Kirik U, Waldemarson S, James P.

J Proteome Res. 2015 Jul 2;14(7):2819-27. doi: 10.1021/acs.jproteome.5b00375. Epub 2015 Jun 22.

PMID:
26055192
7.

Changes in glycoprotein expression between primary breast tumour and synchronous lymph node metastases or asynchronous distant metastases.

Kurbasic E, Sjöström M, Krogh M, Folkesson E, Grabau D, Hansson K, Rydén L, Waldemarson S, James P, Niméus E.

Clin Proteomics. 2015 May 12;12(1):13. doi: 10.1186/s12014-015-9084-7. eCollection 2015.

8.

AFFIRM--a multiplexed immunoaffinity platform that combines recombinant antibody fragments and LC-SRM analysis.

Säll A, Carlsson F, Olsson N, Wingren C, Ohlin M, Persson H, Waldemarson S.

J Proteome Res. 2014 Dec 5;13(12):5837-47. doi: 10.1021/pr500757s. Epub 2014 Nov 25.

PMID:
25337893
9.

Grading breast cancer tissues using molecular portraits.

Olsson N, Carlsson P, James P, Hansson K, Waldemarson S, Malmström P, Fernö M, Ryden L, Wingren C, Borrebaeck CA.

Mol Cell Proteomics. 2013 Dec;12(12):3612-23. doi: 10.1074/mcp.M113.030379. Epub 2013 Aug 27.

10.

Detection and correction of interference in SRM analysis.

Bao Y, Waldemarson S, Zhang G, Wahlander A, Ueberheide B, Myung S, Reed B, Molloy K, Padovan JC, Eriksson J, Neubert TA, Chait BT, Fenyö D.

Methods. 2013 Jun 15;61(3):299-303. doi: 10.1016/j.ymeth.2013.05.008. Epub 2013 May 23.

11.

Design, implementation and multisite evaluation of a system suitability protocol for the quantitative assessment of instrument performance in liquid chromatography-multiple reaction monitoring-MS (LC-MRM-MS).

Abbatiello SE, Mani DR, Schilling B, Maclean B, Zimmerman LJ, Feng X, Cusack MP, Sedransk N, Hall SC, Addona T, Allen S, Dodder NG, Ghosh M, Held JM, Hedrick V, Inerowicz HD, Jackson A, Keshishian H, Kim JW, Lyssand JS, Riley CP, Rudnick P, Sadowski P, Shaddox K, Smith D, Tomazela D, Wahlander A, Waldemarson S, Whitwell CA, You J, Zhang S, Kinsinger CR, Mesri M, Rodriguez H, Borchers CH, Buck C, Fisher SJ, Gibson BW, Liebler D, Maccoss M, Neubert TA, Paulovich A, Regnier F, Skates SJ, Tempst P, Wang M, Carr SA.

Mol Cell Proteomics. 2013 Sep;12(9):2623-39. doi: 10.1074/mcp.M112.027078. Epub 2013 May 20.

12.

Automated quality control system for LC-SRM setups.

Teleman J, Waldemarson S, Malmström J, Levander F.

J Proteomics. 2013 Dec 16;95:77-83. doi: 10.1016/j.jprot.2013.03.029. Epub 2013 Apr 11.

PMID:
23584149
13.

Antibody orientation at bacterial surfaces is related to invasive infection.

Nordenfelt P, Waldemarson S, Linder A, Mörgelin M, Karlsson C, Malmström J, Björck L.

J Exp Med. 2012 Dec 17;209(13):2367-81. doi: 10.1084/jem.20120325. Epub 2012 Dec 10.

14.

Automated selected reaction monitoring software for accurate label-free protein quantification.

Teleman J, Karlsson C, Waldemarson S, Hansson K, James P, Malmström J, Levander F.

J Proteome Res. 2012 Jul 6;11(7):3766-73. doi: 10.1021/pr300256x. Epub 2012 Jun 14.

15.

Protein expression changes in ovarian cancer during the transition from benign to malignant.

Waldemarson S, Krogh M, Alaiya A, Kirik U, Schedvins K, Auer G, Hansson KM, Ossola R, Aebersold R, Lee H, Malmström J, James P.

J Proteome Res. 2012 May 4;11(5):2876-89. doi: 10.1021/pr201258q. Epub 2012 Apr 17.

PMID:
22471520
16.

Protein quantitation using mass spectrometry.

Zhang G, Ueberheide BM, Waldemarson S, Myung S, Molloy K, Eriksson J, Chait BT, Neubert TA, Fenyö D.

Methods Mol Biol. 2010;673:211-22. doi: 10.1007/978-1-60761-842-3_13.

17.

Impact of temperature dependent sampling procedures in proteomics and peptidomics--a characterization of the liver and pancreas post mortem degradome.

Scholz B, Sköld K, Kultima K, Fernandez C, Waldemarson S, Savitski MM, Söderquist M, Borén M, Stella R, Andrén P, Zubarev R, James P.

Mol Cell Proteomics. 2011 Mar;10(3):M900229MCP200. doi: 10.1074/mcp.M900229-MCP200. Epub 2010 Jan 28.

18.

Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma.

Addona TA, Abbatiello SE, Schilling B, Skates SJ, Mani DR, Bunk DM, Spiegelman CH, Zimmerman LJ, Ham AJ, Keshishian H, Hall SC, Allen S, Blackman RK, Borchers CH, Buck C, Cardasis HL, Cusack MP, Dodder NG, Gibson BW, Held JM, Hiltke T, Jackson A, Johansen EB, Kinsinger CR, Li J, Mesri M, Neubert TA, Niles RK, Pulsipher TC, Ransohoff D, Rodriguez H, Rudnick PA, Smith D, Tabb DL, Tegeler TJ, Variyath AM, Vega-Montoto LJ, Wahlander A, Waldemarson S, Wang M, Whiteaker JR, Zhao L, Anderson NL, Fisher SJ, Liebler DC, Paulovich AG, Regnier FE, Tempst P, Carr SA.

Nat Biotechnol. 2009 Jul;27(7):633-41. doi: 10.1038/nbt.1546. Epub 2009 Jun 28. Erratum in: Nat Biotechnol. 2009 Sep;27(9):864.

19.

Analysis of DIGE data using a linear mixed model allowing for protein-specific dye effects.

Krogh M, Liu Y, Waldemarson S, Valastro B, James P.

Proteomics. 2007 Dec;7(23):4235-44.

PMID:
17979174

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