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Items: 1 to 50 of 153

1.

Bayesian Estimation of Population Size Changes by Sampling Tajima's Trees.

Palacios JA, Véber A, Cappello L, Wang Z, Wakeley J, Ramachandran S.

Genetics. 2019 Sep 11. pii: genetics.302373.2019. doi: 10.1534/genetics.119.302373. [Epub ahead of print]

2.

Some topics in theoretical population genetics: Editorial commentaries on a selection of Marc Feldman's TPB papers.

Altenberg L, Creanza N, Fogarty L, Hadany L, Kolodny O, Laland KN, Lehmann L, Otto SP, Rosenberg NA, Van Cleve J, Wakeley J.

Theor Popul Biol. 2018 Dec 26. pii: S0040-5809(18)30030-3. doi: 10.1016/j.tpb.2018.10.003. [Epub ahead of print]

PMID:
30593784
3.

A two-player iterated survival game.

Wakeley J, Nowak M.

Theor Popul Biol. 2019 Feb;125:38-55. doi: 10.1016/j.tpb.2018.12.001. Epub 2018 Dec 12.

PMID:
30552911
4.

Public goods games in populations with fluctuating size.

McAvoy A, Fraiman N, Hauert C, Wakeley J, Nowak MA.

Theor Popul Biol. 2018 May;121:72-84. doi: 10.1016/j.tpb.2018.01.004. Epub 2018 Feb 2.

PMID:
29408219
5.

A non-zero variance of Tajima's estimator for two sequences even for infinitely many unlinked loci.

King L, Wakeley J, Carmi S.

Theor Popul Biol. 2018 Jul;122:22-29. doi: 10.1016/j.tpb.2017.03.002. Epub 2017 Mar 21.

PMID:
28341209
6.

Population structure and coalescence in pedigrees: Comparisons to the structured coalescent and a framework for inference.

Wilton PR, Baduel P, Landon MM, Wakeley J.

Theor Popul Biol. 2017 Jun;115:1-12. doi: 10.1016/j.tpb.2017.01.004. Epub 2017 Jan 28.

PMID:
28143695
7.

Taking Exception to Human Eugenics.

Roth FP, Wakeley J.

Genetics. 2016 Oct;204(2):821-823. No abstract available.

8.

Empirical Bayes Estimation of Coalescence Times from Nucleotide Sequence Data.

King L, Wakeley J.

Genetics. 2016 Sep;204(1):249-57. doi: 10.1534/genetics.115.185751. Epub 2016 Jul 20.

9.

Effects of the population pedigree on genetic signatures of historical demographic events.

Wakeley J, King L, Wilton PR.

Proc Natl Acad Sci U S A. 2016 Jul 19;113(29):7994-8001. doi: 10.1073/pnas.1601080113.

10.

Vulnerability to depression is associated with a failure to acquire implicit social appraisals.

Bayliss AP, Tipper SP, Wakeley J, Cowen PJ, Rogers RD.

Cogn Emot. 2017 Jun;31(4):825-833. doi: 10.1080/02699931.2016.1160869. Epub 2016 Apr 6.

11.

Leveraging Distant Relatedness to Quantify Human Mutation and Gene-Conversion Rates.

Palamara PF, Francioli LC, Wilton PR, Genovese G, Gusev A, Finucane HK, Sankararaman S; Genome of the Netherlands Consortium, Sunyaev SR, de Bakker PI, Wakeley J, Pe'er I, Price AL.

Am J Hum Genet. 2015 Dec 3;97(6):775-89. doi: 10.1016/j.ajhg.2015.10.006. Epub 2015 Nov 12.

12.

Bayesian Nonparametric Inference of Population Size Changes from Sequential Genealogies.

Palacios JA, Wakeley J, Ramachandran S.

Genetics. 2015 Sep;201(1):281-304. doi: 10.1534/genetics.115.177980. Epub 2015 Jul 28.

13.

A renewal theory approach to IBD sharing.

Carmi S, Wilton PR, Wakeley J, Pe'er I.

Theor Popul Biol. 2014 Nov;97:35-48. doi: 10.1016/j.tpb.2014.08.002. Epub 2014 Aug 18.

14.

Loss and recovery of genetic diversity in adapting populations of HIV.

Pennings PS, Kryazhimskiy S, Wakeley J.

PLoS Genet. 2014 Jan;10(1):e1004000. doi: 10.1371/journal.pgen.1004000. Epub 2014 Jan 23.

15.

Preliminary evidence that sub-chronic citalopram triggers the re-evaluation of value in intimate partnerships.

Bilderbeck AC, Wakeley J, Godlewska BR, McGlone F, Harris T, Cowen PJ, Rogers RD.

Soc Cogn Affect Neurosci. 2014 Sep;9(9):1419-25. doi: 10.1093/scan/nst135. Epub 2013 Aug 31.

16.

I want to help you, but I am not sure why: gaze-cuing induces altruistic giving.

Rogers RD, Bayliss AP, Szepietowska A, Dale L, Reeder L, Pizzamiglio G, Czarna K, Wakeley J, Cowen PJ, Tipper SP.

J Exp Psychol Gen. 2014 Apr;143(2):763-77. doi: 10.1037/a0033677. Epub 2013 Aug 12.

17.

Coalescent theory has many new branches.

Wakeley J.

Theor Popul Biol. 2013 Aug;87:1-4. doi: 10.1016/j.tpb.2013.06.001. Epub 2013 Jun 5. No abstract available.

PMID:
23747657
18.

Extending coalescent theory to autotetraploids.

Arnold B, Bomblies K, Wakeley J.

Genetics. 2012 Sep;192(1):195-204. doi: 10.1534/genetics.112.140582. Epub 2012 Jun 19.

19.

Reduced subjective response to acute ethanol administration among young men with a broad bipolar phenotype.

Yip SW, Doherty J, Wakeley J, Saunders K, Tzagarakis C, de Wit H, Goodwin GM, Rogers RD.

Neuropsychopharmacology. 2012 Jul;37(8):1808-15. doi: 10.1038/npp.2012.45. Epub 2012 Apr 11.

20.

Gene genealogies within a fixed pedigree, and the robustness of Kingman's coalescent.

Wakeley J, King L, Low BS, Ramachandran S.

Genetics. 2012 Apr;190(4):1433-45. doi: 10.1534/genetics.111.135574. Epub 2012 Jan 10.

21.

Serotonergic activity influences the cognitive appraisal of close intimate relationships in healthy adults.

Bilderbeck AC, McCabe C, Wakeley J, McGlone F, Harris T, Cowen PJ, Rogers RD.

Biol Psychiatry. 2011 Apr 15;69(8):720-5. doi: 10.1016/j.biopsych.2010.12.038.

PMID:
21396628
22.

Recovering population parameters from a single gene genealogy: an unbiased estimator of the growth rate.

Maruvka YE, Shnerb NM, Bar-Yam Y, Wakeley J.

Mol Biol Evol. 2011 May;28(5):1617-31. doi: 10.1093/molbev/msq331. Epub 2010 Dec 16.

PMID:
21172828
23.

Genome structure and the benefit of sex.

Watson RA, Weinreich DM, Wakeley J.

Evolution. 2011 Feb;65(2):523-36. doi: 10.1111/j.1558-5646.2010.01144.x. Epub 2010 Nov 5.

PMID:
21029076
24.

Serotonin and dopamine play complementary roles in gambling to recover losses.

Campbell-Meiklejohn D, Wakeley J, Herbert V, Cook J, Scollo P, Ray MK, Selvaraj S, Passingham RE, Cowen P, Rogers RD.

Neuropsychopharmacology. 2011 Jan;36(2):402-10. doi: 10.1038/npp.2010.170. Epub 2010 Oct 27.

25.

Pacific salmon and the coalescent effective population size.

Cenik C, Wakeley J.

PLoS One. 2010 Sep 27;5(9):e13019. doi: 10.1371/journal.pone.0013019.

26.

Sufficiency of the number of segregating sites in the limit under finite-sites mutation.

Roychoudhury A, Wakeley J.

Theor Popul Biol. 2010 Sep;78(2):118-22. doi: 10.1016/j.tpb.2010.05.003. Epub 2010 Jun 2.

PMID:
20573595
27.

A structured coalescent process for seasonally fluctuating populations.

Shpak M, Wakeley J, Garrigan D, Lewontin RC.

Evolution. 2010 May;64(5):1395-409. doi: 10.1111/j.1558-5646.2009.00891.x. Epub 2009 Nov 6.

PMID:
19895551
28.

Measuring the sensitivity of single-locus "neutrality tests" using a direct perturbation approach.

Garrigan D, Lewontin R, Wakeley J.

Mol Biol Evol. 2010 Jan;27(1):73-89. doi: 10.1093/molbev/msp209.

29.

Altered risk-aversion and risk-seeking behavior in bipolar disorder.

Chandler RA, Wakeley J, Goodwin GM, Rogers RD.

Biol Psychiatry. 2009 Nov 1;66(9):840-6. doi: 10.1016/j.biopsych.2009.05.011. Epub 2009 Jul 17.

PMID:
19615669
30.

Modeling multiallelic selection using a Moran model.

Muirhead CA, Wakeley J.

Genetics. 2009 Aug;182(4):1141-57. doi: 10.1534/genetics.108.089474. Epub 2009 May 27.

31.

Evolution of cooperation by phenotypic similarity.

Antal T, Ohtsuki H, Wakeley J, Taylor PD, Nowak MA.

Proc Natl Acad Sci U S A. 2009 May 26;106(21):8597-600. doi: 10.1073/pnas.0902528106. Epub 2009 Apr 29.

32.

The conditional ancestral selection graph with strong balancing selection.

Wakeley J, Sargsyan O.

Theor Popul Biol. 2009 Jun;75(4):355-64. doi: 10.1016/j.tpb.2009.04.002. Epub 2009 Apr 14.

PMID:
19371754
33.

Coalescence times and FST under a skewed offspring distribution among individuals in a population.

Eldon B, Wakeley J.

Genetics. 2009 Feb;181(2):615-29. doi: 10.1534/genetics.108.094342. Epub 2008 Dec 1.

34.

Extensions of the coalescent effective population size.

Wakeley J, Sargsyan O.

Genetics. 2009 Jan;181(1):341-5. doi: 10.1534/genetics.108.092460. Epub 2008 Nov 10.

35.

Population differentiation and migration: coalescence times in a two-sex island model for autosomal and X-linked loci.

Ramachandran S, Rosenberg NA, Feldman MW, Wakeley J.

Theor Popul Biol. 2008 Dec;74(4):291-301. doi: 10.1016/j.tpb.2008.08.003. Epub 2008 Sep 4.

36.

Conditional gene genealogies under strong purifying selection.

Wakeley J.

Mol Biol Evol. 2008 Dec;25(12):2615-26. doi: 10.1093/molbev/msn209. Epub 2008 Sep 17.

PMID:
18799710
37.

The influence of gene conversion on linkage disequilibrium around a selective sweep.

Jones DA, Wakeley J.

Genetics. 2008 Oct;180(2):1251-9. doi: 10.1534/genetics.108.092270. Epub 2008 Aug 30.

38.

A coalescent process with simultaneous multiple mergers for approximating the gene genealogies of many marine organisms.

Sargsyan O, Wakeley J.

Theor Popul Biol. 2008 Aug;74(1):104-14. doi: 10.1016/j.tpb.2008.04.009. Epub 2008 May 14.

PMID:
18554676
39.

Complex speciation of humans and chimpanzees.

Wakeley J.

Nature. 2008 Mar 13;452(7184):E3-4; discussion E4. doi: 10.1038/nature06805.

PMID:
18337768
40.

Linkage disequilibrium under skewed offspring distribution among individuals in a population.

Eldon B, Wakeley J.

Genetics. 2008 Mar;178(3):1517-32. doi: 10.1534/genetics.107.075200. Epub 2008 Feb 1.

41.

Recombination, gene conversion, and identity-by-descent at three loci.

Jones D, Wakeley J.

Theor Popul Biol. 2008 Mar;73(2):264-76. doi: 10.1016/j.tpb.2007.10.006. Epub 2007 Dec 4.

PMID:
18215407
42.

Expected coalescence times and segregating sites in a model of glacial cycles.

Jesus FF, Wilkins JF, Solferini VN, Wakeley J.

Genet Mol Res. 2006 Jul 31;5(3):466-74.

43.

The effects of low doses of delta-9 tetrahydrocannabinol on reinforcement processing in the risky decision-making of young healthy adults.

Rogers RD, Wakeley J, Robson PJ, Bhagwagar Z, Makela P.

Neuropsychopharmacology. 2007 Feb;32(2):417-28. Epub 2006 Sep 27.

44.

Corridors for migration between large subdivided populations, and the structured coalescent.

Wakeley J, Lessard S.

Theor Popul Biol. 2006 Dec;70(4):412-20. Epub 2006 Jun 12.

PMID:
16857226
45.

Effects of intra-gene fitness interactions on the benefit of sexual recombination.

Watson RA, Weinreich DM, Wakeley J.

Biochem Soc Trans. 2006 Aug;34(Pt 4):560-1.

PMID:
16856860
46.
47.

Convergence to the island-model coalescent process in populations with restricted migration.

Matsen FA, Wakeley J.

Genetics. 2006 Jan;172(1):701-8. Epub 2005 Oct 11.

48.

Low doses of delta-9 tetrahydrocannabinol (THC) have divergent effects on short-term spatial memory in young, healthy adults.

Makela P, Wakeley J, Gijsman H, Robson PJ, Bhagwagar Z, Rogers RD.

Neuropsychopharmacology. 2006 Feb;31(2):462-70.

49.

The limits of theoretical population genetics.

Wakeley J.

Genetics. 2005 Jan;169(1):1-7. Review. No abstract available.

50.

Succinate complex crystal structures of the alpha-ketoglutarate-dependent dioxygenase AtsK: steric aspects of enzyme self-hydroxylation.

Müller I, Stückl C, Wakeley J, Kertesz M, Usón I.

J Biol Chem. 2005 Feb 18;280(7):5716-23. Epub 2004 Nov 12.

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