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Items: 1 to 50 of 58

1.

The molecular origin and taxonomy of mucinous ovarian carcinoma.

Cheasley D, Wakefield MJ, Ryland GL, Allan PE, Alsop K, Amarasinghe KC, Ananda S, Anglesio MS, Au-Yeung G, Böhm M, Bowtell DDL, Brand A, Chenevix-Trench G, Christie M, Chiew YE, Churchman M, DeFazio A, Demeo R, Dudley R, Fairweather N, Fedele CG, Fereday S, Fox SB, Gilks CB, Gourley C, Hacker NF, Hadley AM, Hendley J, Ho GY, Hughes S, Hunstman DG, Hunter SM, Jobling TW, Kalli KR, Kaufmann SH, Kennedy CJ, Köbel M, Le Page C, Li J, Lupat R, McNally OM, McAlpine JN, Mes-Masson AM, Mileshkin L, Provencher DM, Pyman J, Rahimi K, Rowley SM, Salazar C, Samimi G, Saunders H, Semple T, Sharma R, Sharpe AJ, Stephens AN, Thio N, Torres MC, Traficante N, Xing Z, Zethoven M, Antill YC, Scott CL, Campbell IG, Gorringe KL.

Nat Commun. 2019 Sep 2;10(1):3935. doi: 10.1038/s41467-019-11862-x.

2.

FokI-dCas9 mediates high-fidelity genome editing in pigs.

Fisicaro N, Salvaris EJ, Philip GK, Wakefield MJ, Nottle MB, Hawthorne WJ, Cowan PJ.

Xenotransplantation. 2019 Aug 12:e12551. doi: 10.1111/xen.12551. [Epub ahead of print]

PMID:
31407391
3.

Diverse mechanisms of PARP inhibitor resistance in ovarian cancer.

Wakefield MJ, Nesic K, Kondrashova O, Scott CL.

Biochim Biophys Acta Rev Cancer. 2019 Dec;1872(2):188307. doi: 10.1016/j.bbcan.2019.08.002. Epub 2019 Aug 2. Review. No abstract available.

PMID:
31381953
4.

RNA-seq of Isolated Chromaffin Cells Highlights the Role of Sex-Linked and Imprinted Genes in Adrenal Medulla Development.

Chan WH, Komada M, Fukushima T, Southard-Smith EM, Anderson CR, Wakefield MJ.

Sci Rep. 2019 Mar 8;9(1):3929. doi: 10.1038/s41598-019-40501-0.

5.

Methylation of all BRCA1 copies predicts response to the PARP inhibitor rucaparib in ovarian carcinoma.

Kondrashova O, Topp M, Nesic K, Lieschke E, Ho GY, Harrell MI, Zapparoli GV, Hadley A, Holian R, Boehm E, Heong V, Sanij E, Pearson RB, Krais JJ, Johnson N, McNally O, Ananda S, Alsop K, Hutt KJ, Kaufmann SH, Lin KK, Harding TC, Traficante N; Australian Ovarian Cancer Study (AOCS), deFazio A, McNeish IA, Bowtell DD, Swisher EM, Dobrovic A, Wakefield MJ, Scott CL.

Nat Commun. 2018 Sep 28;9(1):3970. doi: 10.1038/s41467-018-05564-z.

6.

DNA repair processes are critical mediators of p53-dependent tumor suppression.

Janic A, Valente LJ, Wakefield MJ, Di Stefano L, Milla L, Wilcox S, Yang H, Tai L, Vandenberg CJ, Kueh AJ, Mizutani S, Brennan MS, Schenk RL, Lindqvist LM, Papenfuss AT, O'Connor L, Strasser A, Herold MJ.

Nat Med. 2018 Jul;24(7):947-953. doi: 10.1038/s41591-018-0043-5. Epub 2018 Jun 11.

PMID:
29892060
7.

Secondary Somatic Mutations Restoring RAD51C and RAD51D Associated with Acquired Resistance to the PARP Inhibitor Rucaparib in High-Grade Ovarian Carcinoma.

Kondrashova O, Nguyen M, Shield-Artin K, Tinker AV, Teng NNH, Harrell MI, Kuiper MJ, Ho GY, Barker H, Jasin M, Prakash R, Kass EM, Sullivan MR, Brunette GJ, Bernstein KA, Coleman RL, Floquet A, Friedlander M, Kichenadasse G, O'Malley DM, Oza A, Sun J, Robillard L, Maloney L, Bowtell D, Giordano H, Wakefield MJ, Kaufmann SH, Simmons AD, Harding TC, Raponi M, McNeish IA, Swisher EM, Lin KK, Scott CL; AOCS Study Group.

Cancer Discov. 2017 Sep;7(9):984-998. doi: 10.1158/2159-8290.CD-17-0419. Epub 2017 Jun 6.

8.

Correction: Mechanisms That Determine the Internal Environment of the Developing Brain: A Transcriptomic, Functional and Ultrastructural Approach.

Liddelow SA, Dziegielewska KM, Ek CJ, Habgood MD, Bauer H, Bauer HC, Lindsay H, Wakefield MJ, Strazielle N, Kratzer I, Møllgård K, Ghersi-Egea JF, Saunders NR.

PLoS One. 2016 Jan 19;11(1):e0147680. doi: 10.1371/journal.pone.0147680. eCollection 2016. No abstract available.

9.

The impact of donor age and endothelial cell density on graft survival following penetrating keratoplasty.

Wakefield MJ, Armitage WJ, Jones MN, Kaye SB, Larkin DF, Tole D, Prydal J; National Health Service Blood and Transplant Ocular Tissue Advisory Group (OTAG Audit Study 19).

Br J Ophthalmol. 2016 Jul;100(7):986-989. doi: 10.1136/bjophthalmol-2015-306871. Epub 2015 Nov 13.

PMID:
26567026
10.

Autofluorescence Signatures of Seven Pathogens: Preliminary in Vitro Investigations of a Potential Diagnostic for Acanthamoeba Keratitis.

Molyneux PM, Kilvington S, Wakefield MJ, Prydal JI, Bannister NP.

Cornea. 2015 Dec;34(12):1588-92. doi: 10.1097/ICO.0000000000000645.

PMID:
26488626
11.

Influx mechanisms in the embryonic and adult rat choroid plexus: a transcriptome study.

Saunders NR, Dziegielewska KM, Møllgård K, Habgood MD, Wakefield MJ, Lindsay H, Stratzielle N, Ghersi-Egea JF, Liddelow SA.

Front Neurosci. 2015 Apr 28;9:123. doi: 10.3389/fnins.2015.00123. eCollection 2015.

12.

Age-dependent transcriptome and proteome following transection of neonatal spinal cord of Monodelphis domestica (South American grey short-tailed opossum).

Saunders NR, Noor NM, Dziegielewska KM, Wheaton BJ, Liddelow SA, Steer DL, Ek CJ, Habgood MD, Wakefield MJ, Lindsay H, Truettner J, Miller RD, Smith AI, Dietrich WD.

PLoS One. 2014 Jun 10;9(6):e99080. doi: 10.1371/journal.pone.0099080. eCollection 2014.

13.

Spectroscopic measurements in scleritis: bluish-red or deep red?

Bannister NP, Wakefield MJ, Tatham A, Bugby SL, Molyneux PM, Prydal JI.

Br J Ophthalmol. 2014 Dec;98(12):1761-4. doi: 10.1136/bjophthalmol-2013-304086. Epub 2014 May 2.

PMID:
24795332
14.

Molecular correlates of platinum response in human high-grade serous ovarian cancer patient-derived xenografts.

Topp MD, Hartley L, Cook M, Heong V, Boehm E, McShane L, Pyman J, McNally O, Ananda S, Harrell M, Etemadmoghadam D, Galletta L, Alsop K, Mitchell G, Fox SB, Kerr JB, Hutt KJ, Kaufmann SH, Australian Ovarian Cancer Study, Swisher EM, Bowtell DD, Wakefield MJ, Scott CL.

Mol Oncol. 2014 May;8(3):656-68. doi: 10.1016/j.molonc.2014.01.008. Epub 2014 Jan 24.

15.

Liver failure following antituberculosis (ATT) chemotherapy for presumed tuberculous uveitis.

Wakefield MJ, Kumar P.

Eye (Lond). 2014 Jan;28(1):110-1. doi: 10.1038/eye.2013.226. Epub 2013 Oct 18. No abstract available.

16.

Control of bacterial virulence by the RalR regulator of the rabbit-specific enteropathogenic Escherichia coli strain E22.

Srikhanta YN, Hocking DM, Wakefield MJ, Higginson E, Robins-Browne RM, Yang J, Tauschek M.

Infect Immun. 2013 Nov;81(11):4232-43. doi: 10.1128/IAI.00710-13. Epub 2013 Sep 3.

17.

Mechanisms that determine the internal environment of the developing brain: a transcriptomic, functional and ultrastructural approach.

Liddelow SA, Dziegielewska KM, Ek CJ, Habgood MD, Bauer H, Bauer HC, Lindsay H, Wakefield MJ, Strazielle N, Kratzer I, Møllgård K, Ghersi-Egea JF, Saunders NR.

PLoS One. 2013 Jul 2;8(7):e65629. doi: 10.1371/journal.pone.0065629. Print 2013. Erratum in: PLoS One. 2016;11(1):e0147680.

18.

Smchd1 regulates a subset of autosomal genes subject to monoallelic expression in addition to being critical for X inactivation.

Mould AW, Pang Z, Pakusch M, Tonks ID, Stark M, Carrie D, Mukhopadhyay P, Seidel A, Ellis JJ, Deakin J, Wakefield MJ, Krause L, Blewitt ME, Kay GF.

Epigenetics Chromatin. 2013 Jul 2;6(1):19. doi: 10.1186/1756-8935-6-19.

19.

RegR virulence regulon of rabbit-specific enteropathogenic Escherichia coli strain E22.

Srikhanta YN, Hocking DM, Praszkier J, Wakefield MJ, Robins-Browne RM, Yang J, Tauschek M.

Infect Immun. 2013 Apr;81(4):1078-89. doi: 10.1128/IAI.01325-12. Epub 2013 Jan 22.

20.

Genome-wide analysis of the Pho regulon in a pstCA mutant of Citrobacter rodentium.

Cheng C, Wakefield MJ, Yang J, Tauschek M, Robins-Browne RM.

PLoS One. 2012;7(11):e50682. doi: 10.1371/journal.pone.0050682. Epub 2012 Nov 30.

21.

Involvement of PatE, a prophage-encoded AraC-like regulator, in the transcriptional activation of acid resistance pathways of enterohemorrhagic Escherichia coli strain EDL933.

Bender JK, Praszkier J, Wakefield MJ, Holt K, Tauschek M, Robins-Browne RM, Yang J.

Appl Environ Microbiol. 2012 Aug;78(15):5083-92. doi: 10.1128/AEM.00617-12. Epub 2012 May 11.

22.

A second-generation anchored genetic linkage map of the tammar wallaby (Macropus eugenii).

Wang C, Webley L, Wei KJ, Wakefield MJ, Patel HR, Deakin JE, Alsop A, Marshall Graves JA, Cooper DW, Nicholas FW, Zenger KR.

BMC Genet. 2011 Aug 19;12:72. doi: 10.1186/1471-2156-12-72.

23.

Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development.

Renfree MB, Papenfuss AT, Deakin JE, Lindsay J, Heider T, Belov K, Rens W, Waters PD, Pharo EA, Shaw G, Wong ES, Lefèvre CM, Nicholas KR, Kuroki Y, Wakefield MJ, Zenger KR, Wang C, Ferguson-Smith M, Nicholas FW, Hickford D, Yu H, Short KR, Siddle HV, Frankenberg SR, Chew KY, Menzies BR, Stringer JM, Suzuki S, Hore TA, Delbridge ML, Patel HR, Mohammadi A, Schneider NY, Hu Y, O'Hara W, Al Nadaf S, Wu C, Feng ZP, Cocks BG, Wang J, Flicek P, Searle SM, Fairley S, Beal K, Herrero J, Carone DM, Suzuki Y, Sugano S, Toyoda A, Sakaki Y, Kondo S, Nishida Y, Tatsumoto S, Mandiou I, Hsu A, McColl KA, Lansdell B, Weinstock G, Kuczek E, McGrath A, Wilson P, Men A, Hazar-Rethinam M, Hall A, Davis J, Wood D, Williams S, Sundaravadanam Y, Muzny DM, Jhangiani SN, Lewis LR, Morgan MB, Okwuonu GO, Ruiz SJ, Santibanez J, Nazareth L, Cree A, Fowler G, Kovar CL, Dinh HH, Joshi V, Jing C, Lara F, Thornton R, Chen L, Deng J, Liu Y, Shen JY, Song XZ, Edson J, Troon C, Thomas D, Stephens A, Yapa L, Levchenko T, Gibbs RA, Cooper DW, Speed TP, Fujiyama A, Graves JA, O'Neill RJ, Pask AJ, Forrest SM, Worley KC.

Genome Biol. 2011 Aug 29;12(8):R81. doi: 10.1186/gb-2011-12-8-r81. Erratum in: Genome Biol. 2011;12(12):414. Patel, Hardip R [added].

24.

ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity.

Young MD, Willson TA, Wakefield MJ, Trounson E, Hilton DJ, Blewitt ME, Oshlack A, Majewski IJ.

Nucleic Acids Res. 2011 Sep 1;39(17):7415-27. doi: 10.1093/nar/gkr416. Epub 2011 Jun 7.

25.

Response to Bunce et al. Causes of blind and partial sight certifications in England and Wales: April 2007-March 2008.

Wakefield MJ, Tole DM, Bailey CC, Mundasad MV, Sparrow JM.

Eye (Lond). 2011 Jun;25(6):821; author reply 821. doi: 10.1038/eye.2011.20. Epub 2011 Feb 25. No abstract available.

26.

Review of lateral orbital wall ossifying fibroma.

Wakefield MJ, Ross AH, Damato EM, Salvi SM, Baker GR.

Orbit. 2010 Dec;29(6):317-20. doi: 10.3109/01676830.2010.522299. Review.

PMID:
21158572
27.

Gene ontology analysis for RNA-seq: accounting for selection bias.

Young MD, Wakefield MJ, Smyth GK, Oshlack A.

Genome Biol. 2010;11(2):R14. doi: 10.1186/gb-2010-11-2-r14. Epub 2010 Feb 4.

28.

Transcript length bias in RNA-seq data confounds systems biology.

Oshlack A, Wakefield MJ.

Biol Direct. 2009 Apr 16;4:14. doi: 10.1186/1745-6150-4-14.

29.

Physical map of two tammar wallaby chromosomes: a strategy for mapping in non-model mammals.

Deakin JE, Koina E, Waters PD, Doherty R, Patel VS, Delbridge ML, Dobson B, Fong J, Hu Y, van den Hurk C, Pask AJ, Shaw G, Smith C, Thompson K, Wakefield MJ, Yu H, Renfree MB, Graves JA.

Chromosome Res. 2008;16(8):1159-75. doi: 10.1007/s10577-008-1266-y. Epub 2008 Nov 8.

PMID:
18987984
30.

RegA, an AraC-like protein, is a global transcriptional regulator that controls virulence gene expression in Citrobacter rodentium.

Hart E, Yang J, Tauschek M, Kelly M, Wakefield MJ, Frankel G, Hartland EL, Robins-Browne RM.

Infect Immun. 2008 Nov;76(11):5247-56. doi: 10.1128/IAI.00770-08. Epub 2008 Sep 2.

31.

Cone visual pigments of monotremes: filling the phylogenetic gap.

Wakefield MJ, Anderson M, Chang E, Wei KJ, Kaul R, Graves JA, Grützner F, Deeb SS.

Vis Neurosci. 2008 May-Jun;25(3):257-64. doi: 10.1017/S0952523808080255.

PMID:
18598396
32.

Genome analysis of the platypus reveals unique signatures of evolution.

Warren WC, Hillier LW, Marshall Graves JA, Birney E, Ponting CP, Grützner F, Belov K, Miller W, Clarke L, Chinwalla AT, Yang SP, Heger A, Locke DP, Miethke P, Waters PD, Veyrunes F, Fulton L, Fulton B, Graves T, Wallis J, Puente XS, López-Otín C, Ordóñez GR, Eichler EE, Chen L, Cheng Z, Deakin JE, Alsop A, Thompson K, Kirby P, Papenfuss AT, Wakefield MJ, Olender T, Lancet D, Huttley GA, Smit AF, Pask A, Temple-Smith P, Batzer MA, Walker JA, Konkel MK, Harris RS, Whittington CM, Wong ES, Gemmell NJ, Buschiazzo E, Vargas Jentzsch IM, Merkel A, Schmitz J, Zemann A, Churakov G, Kriegs JO, Brosius J, Murchison EP, Sachidanandam R, Smith C, Hannon GJ, Tsend-Ayush E, McMillan D, Attenborough R, Rens W, Ferguson-Smith M, Lefèvre CM, Sharp JA, Nicholas KR, Ray DA, Kube M, Reinhardt R, Pringle TH, Taylor J, Jones RC, Nixon B, Dacheux JL, Niwa H, Sekita Y, Huang X, Stark A, Kheradpour P, Kellis M, Flicek P, Chen Y, Webber C, Hardison R, Nelson J, Hallsworth-Pepin K, Delehaunty K, Markovic C, Minx P, Feng Y, Kremitzki C, Mitreva M, Glasscock J, Wylie T, Wohldmann P, Thiru P, Nhan MN, Pohl CS, Smith SM, Hou S, Nefedov M, de Jong PJ, Renfree MB, Mardis ER, Wilson RK.

Nature. 2008 May 8;453(7192):175-83. doi: 10.1038/nature06936. Erratum in: Nature. 2008 Sep 11;455(7210):256. Nefedov, Mikhail [added]; de Jong, Pieter J [added].

33.

PyCogent: a toolkit for making sense from sequence.

Knight R, Maxwell P, Birmingham A, Carnes J, Caporaso JG, Easton BC, Eaton M, Hamady M, Lindsay H, Liu Z, Lozupone C, McDonald D, Robeson M, Sammut R, Smit S, Wakefield MJ, Widmann J, Wikman S, Wilson S, Ying H, Huttley GA.

Genome Biol. 2007;8(8):R171.

34.

Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences.

Mikkelsen TS, Wakefield MJ, Aken B, Amemiya CT, Chang JL, Duke S, Garber M, Gentles AJ, Goodstadt L, Heger A, Jurka J, Kamal M, Mauceli E, Searle SM, Sharpe T, Baker ML, Batzer MA, Benos PV, Belov K, Clamp M, Cook A, Cuff J, Das R, Davidow L, Deakin JE, Fazzari MJ, Glass JL, Grabherr M, Greally JM, Gu W, Hore TA, Huttley GA, Kleber M, Jirtle RL, Koina E, Lee JT, Mahony S, Marra MA, Miller RD, Nicholls RD, Oda M, Papenfuss AT, Parra ZE, Pollock DD, Ray DA, Schein JE, Speed TP, Thompson K, VandeBerg JL, Wade CM, Walker JA, Waters PD, Webber C, Weidman JR, Xie X, Zody MC; Broad Institute Genome Sequencing Platform; Broad Institute Whole Genome Assembly Team, Graves JA, Ponting CP, Breen M, Samollow PB, Lander ES, Lindblad-Toh K.

Nature. 2007 May 10;447(7141):167-77.

PMID:
17495919
35.

Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica.

Gentles AJ, Wakefield MJ, Kohany O, Gu W, Batzer MA, Pollock DD, Jurka J.

Genome Res. 2007 Jul;17(7):992-1004. Epub 2007 May 10.

36.

Rates of genome evolution and branching order from whole genome analysis.

Huttley GA, Wakefield MJ, Easteal S.

Mol Biol Evol. 2007 Aug;24(8):1722-30. Epub 2007 May 9.

PMID:
17494028
37.

The region homologous to the X-chromosome inactivation centre has been disrupted in marsupial and monotreme mammals.

Hore TA, Koina E, Wakefield MJ, Marshall Graves JA.

Chromosome Res. 2007;15(2):147-61. Epub 2007 Mar 5.

PMID:
17333539
38.
39.

Reconstructing an ancestral mammalian immune supercomplex from a marsupial major histocompatibility complex.

Belov K, Deakin JE, Papenfuss AT, Baker ML, Melman SD, Siddle HV, Gouin N, Goode DL, Sargeant TJ, Robinson MD, Wakefield MJ, Mahony S, Cross JG, Benos PV, Samollow PB, Speed TP, Graves JA, Miller RD.

PLoS Biol. 2006 Mar;4(3):e46. Epub 2006 Jan 31.

40.

Assignment of BReast Cancer Associated 1 (BRCA1) to tammar wallaby (Macropus eugenii) chromosome 2q3 by in situ hybridization.

Wakefield MJ, Alsop AE.

Cytogenet Genome Res. 2006;112(1-2):180C. No abstract available.

41.

Safety and immunogenicity of New Zealand strain meningococcal serogroup B OMV vaccine in healthy adults: beginning of epidemic control.

Thornton V, Lennon D, Rasanathan K, O'Hallahan J, Oster P, Stewart J, Tilman S, Aaberge I, Feiring B, Nokleby H, Rosenqvist E, White K, Reid S, Mulholland K, Wakefield MJ, Martin D.

Vaccine. 2006 Feb 27;24(9):1395-400. Epub 2005 Oct 4.

PMID:
16242221
42.

Isolation, X location and activity of the marsupial homologue of SLC16A2, an XIST-flanking gene in eutherian mammals.

Koina E, Wakefield MJ, Walcher C, Disteche CM, Whitehead S, Ross M, Marshall Graves JA.

Chromosome Res. 2005;13(7):687-98. Epub 2005 Oct 24.

43.

Discussion of "A Bayesian approach to DNA sequence segmentation".

Booth HS, Burden CJ, Maindonald JH, Santoso L, Wakefield MJ, Wilson SR.

Biometrics. 2005 Jun;61(2):635-7; discussion 637-9.

PMID:
16011717
44.

Vestige: maximum likelihood phylogenetic footprinting.

Wakefield MJ, Maxwell P, Huttley GA.

BMC Bioinformatics. 2005 May 29;6:130.

45.

Marsupials and monotremes sort genome treasures from junk.

Wakefield MJ, Graves JA.

Genome Biol. 2005;6(5):218. Epub 2005 Apr 28. Review.

46.

Cone visual pigments of the Australian marsupials, the stripe-faced and fat-tailed dunnarts: sequence and inferred spectral properties.

Strachan J, Chang LY, Wakefield MJ, Graves JA, Deeb SS.

Vis Neurosci. 2004 May-Jun;21(3):223-9.

PMID:
15518192
47.

PyEvolve: a toolkit for statistical modelling of molecular evolution.

Butterfield A, Vedagiri V, Lang E, Lawrence C, Wakefield MJ, Isaev A, Huttley GA.

BMC Bioinformatics. 2004 Jan 5;5:1.

48.

Immunologic memory with no detectable bactericidal antibody response to a first dose of meningococcal serogroup C conjugate vaccine at four years.

McVernon J, MacLennan J, Pollard AJ, Oster P, Wakefield MJ, Danzig L, Moxon ER.

Pediatr Infect Dis J. 2003 Jul;22(7):659-61.

PMID:
12886896
49.

The cone visual pigments of an Australian marsupial, the tammar wallaby (Macropus eugenii): sequence, spectral tuning, and evolution.

Deeb SS, Wakefield MJ, Tada T, Marotte L, Yokoyama S, Marshall Graves JA.

Mol Biol Evol. 2003 Oct;20(10):1642-9. Epub 2003 Jul 28.

PMID:
12885969
50.

The kangaroo genome. Leaps and bounds in comparative genomics.

Wakefield MJ, Graves JA.

EMBO Rep. 2003 Feb;4(2):143-7. Review.

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