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Items: 1 to 50 of 245

1.

Topologically-guided continuous protein crystallization controls bacterial surface layer self-assembly.

Comerci CJ, Herrmann J, Yoon J, Jabbarpour F, Zhou X, Nomellini JF, Smit J, Shapiro L, Wakatsuki S, Moerner WE.

Nat Commun. 2019 Jun 21;10(1):2731. doi: 10.1038/s41467-019-10650-x.

PMID:
31227690
2.

Small-Molecule Activators of Glucose-6-phosephate Dehydrogenase (G6PD) Bridging the Dimer Interface.

Raub A, Hwang S, Horikoshi N, Cunningham A, Rahighi S, Wakatsuki S, Mochly-Rosen D.

ChemMedChem. 2019 Jun 11. doi: 10.1002/cmdc.201900341. [Epub ahead of print]

PMID:
31183991
3.

Genetic inhibition of CRMP2 phosphorylation delays Wallerian degeneration after optic nerve injury.

Kinoshita Y, Kondo S, Takahashi K, Nagai J, Wakatsuki S, Araki T, Goshima Y, Ohshima T.

Biochem Biophys Res Commun. 2019 Jul 5;514(4):1037-1039. doi: 10.1016/j.bbrc.2019.05.060. Epub 2019 May 13.

PMID:
31097218
4.

Genetic inhibition of CRMP2 phosphorylation at serine 522 promotes axonal regeneration after optic nerve injury.

Kondo S, Takahashi K, Kinoshita Y, Nagai J, Wakatsuki S, Araki T, Goshima Y, Ohshima T.

Sci Rep. 2019 May 10;9(1):7188. doi: 10.1038/s41598-019-43658-w.

5.

Serial Femtosecond X-Ray Diffraction of HIV-1 Gag MA-IP6 Microcrystals at Ambient Temperature.

I Ciftci H, G Sierra R, Yoon CH, Su Z, Tateishi H, Koga R, Kotaro K, Yumoto F, Senda T, Liang M, Wakatsuki S, Otsuka M, Fujita M, DeMirci H.

Int J Mol Sci. 2019 Apr 3;20(7). pii: E1675. doi: 10.3390/ijms20071675.

6.

The Macromolecular Femtosecond Crystallography Instrument at the Linac Coherent Light Source.

Sierra RG, Batyuk A, Sun Z, Aquila A, Hunter MS, Lane TJ, Liang M, Yoon CH, Alonso-Mori R, Armenta R, Castagna JC, Hollenbeck M, Osier TO, Hayes M, Aldrich J, Curtis R, Koglin JE, Rendahl T, Rodriguez E, Carbajo S, Guillet S, Paul R, Hart P, Nakahara K, Carini G, DeMirci H, Dao EH, Hayes BM, Rao YP, Chollet M, Feng Y, Fuller FD, Kupitz C, Sato T, Seaberg MH, Song S, van Driel TB, Yavas H, Zhu D, Cohen AE, Wakatsuki S, Boutet S.

J Synchrotron Radiat. 2019 Mar 1;26(Pt 2):346-357. doi: 10.1107/S1600577519001577. Epub 2019 Feb 22.

7.

Structural and functional analysis of the GABARAP interaction motif (GIM).

Rogov VV, Stolz A, Ravichandran AC, Rios-Szwed DO, Suzuki H, Kniss A, Löhr F, Wakatsuki S, Dötsch V, Dikic I, Dobson RC, McEwan DG.

EMBO Rep. 2018 Dec;19(12). pii: e47268. doi: 10.15252/embr.201847268. No abstract available.

8.

Correcting glucose-6-phosphate dehydrogenase deficiency with a small-molecule activator.

Hwang S, Mruk K, Rahighi S, Raub AG, Chen CH, Dorn LE, Horikoshi N, Wakatsuki S, Chen JK, Mochly-Rosen D.

Nat Commun. 2018 Oct 2;9(1):4045. doi: 10.1038/s41467-018-06447-z.

9.

Inhibition of collapsin response mediator protein-2 phosphorylation ameliorates motor phenotype of ALS model mice expressing SOD1G93A.

Numata-Uematsu Y, Wakatsuki S, Nagano S, Shibata M, Sakai K, Ichinohe N, Mikoshiba K, Ohshima T, Yamashita N, Goshima Y, Araki T.

Neurosci Res. 2019 Feb;139:63-68. doi: 10.1016/j.neures.2018.08.016. Epub 2018 Sep 5.

PMID:
30194029
10.

Carboxymethylation of CRMP2 is associated with decreased Schwann cell myelination efficiency.

Saitoh F, Hagiwara H, Wakatsuki S, Araki T.

Neurosci Res. 2019 Feb;139:58-62. doi: 10.1016/j.neures.2018.08.015. Epub 2018 Sep 5.

PMID:
30194028
11.

Structure of the 30S ribosomal decoding complex at ambient temperature.

Dao EH, Poitevin F, Sierra RG, Gati C, Rao Y, Ciftci HI, Akşit F, McGurk A, Obrinski T, Mgbam P, Hayes B, De Lichtenberg C, Pardo-Avila F, Corsepius N, Zhang L, Seaberg MH, Hunter MS, Liang M, Koglin JE, Wakatsuki S, Demirci H.

RNA. 2018 Dec;24(12):1667-1676. doi: 10.1261/rna.067660.118. Epub 2018 Aug 23.

12.

Regulation of neuronal/axonal degeneration by ZNRF1 ubiquitin ligase.

Araki T, Wakatsuki S.

Neurosci Res. 2019 Feb;139:21-25. doi: 10.1016/j.neures.2018.07.008. Epub 2018 Aug 15. Review.

PMID:
30118738
13.

What Makes for Good Anesthesia Teaching by Faculty in the Operating Room? The Perspective of Anesthesiology Residents.

Wakatsuki S, Tanaka P, Vinagre R, Marty A, Thomsen JLDL, Macario A.

Cureus. 2018 May 1;10(5):e2563. doi: 10.7759/cureus.2563.

14.

Nutrient transport suggests an evolutionary basis for charged archaeal surface layer proteins.

Li PN, Herrmann J, Tolar BB, Poitevin F, Ramdasi R, Bargar JR, Stahl DA, Jensen GJ, Francis CA, Wakatsuki S, van den Bedem H.

ISME J. 2018 Oct;12(10):2389-2402. doi: 10.1038/s41396-018-0191-0. Epub 2018 Jun 13.

PMID:
29899515
15.

Development of an Objective Structured Clinical Examination Using the American Board of Anesthesiology Content Outline for the Objective Structured Clinical Examination Component of the APPLIED Certification Examination.

Tanaka P, Adriano A, Ngai L, Park YS, Marty A, Wakatsuki S, Brun C, Harrison K, Bushell E, Thomsen JLD, Wen L, Painter C, Chen M, Macario A.

A A Pract. 2018 Oct 1;11(7):193-197. doi: 10.1213/XAA.0000000000000779.

PMID:
29688921
16.

Measurement of enzymatic and motile activities of Arabidopsis myosins by using Arabidopsis actins.

Rula S, Suwa T, Kijima ST, Haraguchi T, Wakatsuki S, Sato N, Duan Z, Tominaga M, Uyeda TQP, Ito K.

Biochem Biophys Res Commun. 2018 Jan 15;495(3):2145-2151. doi: 10.1016/j.bbrc.2017.12.071. Epub 2017 Dec 14.

17.

Taxanes and platinum derivatives impair Schwann cells via distinct mechanisms.

Imai S, Koyanagi M, Azimi Z, Nakazato Y, Matsumoto M, Ogihara T, Yonezawa A, Omura T, Nakagawa S, Wakatsuki S, Araki T, Kaneko S, Nakagawa T, Matsubara K.

Sci Rep. 2017 Jul 20;7(1):5947. doi: 10.1038/s41598-017-05784-1.

18.

Integrated structural biology and molecular ecology of N-cycling enzymes from ammonia-oxidizing archaea.

Tolar BB, Herrmann J, Bargar JR, van den Bedem H, Wakatsuki S, Francis CA.

Environ Microbiol Rep. 2017 Oct;9(5):484-491. doi: 10.1111/1758-2229.12567. Epub 2017 Jul 21. Review.

PMID:
28677304
19.

Structural and functional analysis of the GABARAP interaction motif (GIM).

Rogov VV, Stolz A, Ravichandran AC, Rios-Szwed DO, Suzuki H, Kniss A, Löhr F, Wakatsuki S, Dötsch V, Dikic I, Dobson RC, McEwan DG.

EMBO Rep. 2017 Aug;18(8):1382-1396. doi: 10.15252/embr.201643587. Epub 2017 Jun 27. Erratum in: EMBO Rep. 2018 Dec;19(12):.

20.

Environmental Calcium Controls Alternate Physical States of the Caulobacter Surface Layer.

Herrmann J, Jabbarpour F, Bargar PG, Nomellini JF, Li PN, Lane TJ, Weiss TM, Smit J, Shapiro L, Wakatsuki S.

Biophys J. 2017 May 9;112(9):1841-1851. doi: 10.1016/j.bpj.2017.04.003.

21.

Specific phospholipid scramblases are involved in exposure of phosphatidylserine, an "eat-me" signal for phagocytes, on degenerating axons.

Wakatsuki S, Araki T.

Commun Integr Biol. 2017 Feb 17;10(2):e1296615. doi: 10.1080/19420889.2017.1296615. eCollection 2017.

22.

Phosphorylation of the mitochondrial autophagy receptor Nix enhances its interaction with LC3 proteins.

Rogov VV, Suzuki H, Marinković M, Lang V, Kato R, Kawasaki M, Buljubašić M, Šprung M, Rogova N, Wakatsuki S, Hamacher-Brady A, Dötsch V, Dikic I, Brady NR, Novak I.

Sci Rep. 2017 Apr 25;7(1):1131. doi: 10.1038/s41598-017-01258-6.

23.

Se-SAD serial femtosecond crystallography datasets from selenobiotinyl-streptavidin.

Yoon CH, DeMirci H, Sierra RG, Dao EH, Ahmadi R, Aksit F, Aquila AL, Batyuk A, Ciftci H, Guillet S, Hayes MJ, Hayes B, Lane TJ, Liang M, Lundström U, Koglin JE, Mgbam P, Rao Y, Rendahl T, Rodriguez E, Zhang L, Wakatsuki S, Boutet S, Holton JM, Hunter MS.

Sci Data. 2017 Apr 25;4:170055. doi: 10.1038/sdata.2017.55.

24.

Responses to `Atomic resolution': a badly abused term in structural biology.

Chiu W, Holton J, Langan P, Sauter NK, Schlichting I, Terwilliger T, Martin JL, Read RJ, Wakatsuki S.

Acta Crystallogr D Struct Biol. 2017 Apr 1;73(Pt 4):381-383. doi: 10.1107/S205979831700417X. Epub 2017 Mar 31. No abstract available.

PMID:
28375150
25.

GSK3B-mediated phosphorylation of MCL1 regulates axonal autophagy to promote Wallerian degeneration.

Wakatsuki S, Tokunaga S, Shibata M, Araki T.

J Cell Biol. 2017 Feb;216(2):477-493. doi: 10.1083/jcb.201606020. Epub 2017 Jan 4.

26.

Selenium single-wavelength anomalous diffraction de novo phasing using an X-ray-free electron laser.

Hunter MS, Yoon CH, DeMirci H, Sierra RG, Dao EH, Ahmadi R, Aksit F, Aquila AL, Ciftci H, Guillet S, Hayes MJ, Lane TJ, Liang M, Lundström U, Koglin JE, Mgbam P, Rao Y, Zhang L, Wakatsuki S, Holton JM, Boutet S.

Nat Commun. 2016 Nov 4;7:13388. doi: 10.1038/ncomms13388.

27.

Characterization of paramyosin and thin filaments in the smooth muscle of acorn worm, a member of hemichordates.

Sonobe H, Obinata T, Minokawa T, Haruta T, Kawamura Y, Wakatsuki S, Sato N.

J Biochem. 2016 Dec;160(6):369-379. Epub 2016 Aug 4.

PMID:
27493210
28.

Glutamate signals through mGluR2 to control Schwann cell differentiation and proliferation.

Saitoh F, Wakatsuki S, Tokunaga S, Fujieda H, Araki T.

Sci Rep. 2016 Jul 19;6:29856. doi: 10.1038/srep29856.

29.

NADPH oxidases promote apoptosis by activating ZNRF1 ubiquitin ligase in neurons treated with an exogenously applied oxidant.

Wakatsuki S, Araki T.

Commun Integr Biol. 2016 Mar 22;9(2):e1143575. doi: 10.1080/19420889.2016.1143575. eCollection 2016 Mar-Apr.

30.

A novel mode of ubiquitin recognition by the ubiquitin-binding zinc finger domain of WRNIP1.

Suzuki N, Rohaim A, Kato R, Dikic I, Wakatsuki S, Kawasaki M.

FEBS J. 2016 Jun;283(11):2004-17. doi: 10.1111/febs.13734. Epub 2016 Apr 28.

31.

Expanding beyond biological crystallography.

Martin JL, Read RJ, Wakatsuki S.

Acta Crystallogr D Struct Biol. 2016 Jan;72(Pt 1):1. doi: 10.1107/S2059798315023761. Epub 2016 Jan 1. No abstract available.

PMID:
26894528
32.

Selective Binding of AIRAPL Tandem UIMs to Lys48-Linked Tri-Ubiquitin Chains.

Rahighi S, Braunstein I, Ternette N, Kessler B, Kawasaki M, Kato R, Matsui T, Weiss TM, Stanhill A, Wakatsuki S.

Structure. 2016 Mar 1;24(3):412-22. doi: 10.1016/j.str.2015.12.017. Epub 2016 Feb 11.

33.

The linac coherent light source single particle imaging road map.

Aquila A, Barty A, Bostedt C, Boutet S, Carini G, dePonte D, Drell P, Doniach S, Downing KH, Earnest T, Elmlund H, Elser V, Gühr M, Hajdu J, Hastings J, Hau-Riege SP, Huang Z, Lattman EE, Maia FR, Marchesini S, Ourmazd A, Pellegrini C, Santra R, Schlichting I, Schroer C, Spence JC, Vartanyants IA, Wakatsuki S, Weis WI, Williams GJ.

Struct Dyn. 2015 Apr 21;2(4):041701. doi: 10.1063/1.4918726. eCollection 2015 Jul.

34.

The New Macromolecular Femtosecond Crystallography (MFX) Instrument at LCLS.

Boutet S, Cohen A, Wakatsuki S.

Synchrotron Radiat News. 2016;29(1):23-28. doi: 10.1080/08940886.2016.1124681. Epub 2016 Feb 1. No abstract available.

35.

Oxidative stress-dependent phosphorylation activates ZNRF1 to induce neuronal/axonal degeneration.

Wakatsuki S, Furuno A, Ohshima M, Araki T.

J Cell Biol. 2015 Nov 23;211(4):881-96. doi: 10.1083/jcb.201506102. Epub 2015 Nov 16.

36.

High-intensity double-pulse X-ray free-electron laser.

Marinelli A, Ratner D, Lutman AA, Turner J, Welch J, Decker FJ, Loos H, Behrens C, Gilevich S, Miahnahri AA, Vetter S, Maxwell TJ, Ding Y, Coffee R, Wakatsuki S, Huang Z.

Nat Commun. 2015 Mar 6;6:6369. doi: 10.1038/ncomms7369.

37.

Structural analysis of the complex between penta-EF-hand ALG-2 protein and Sec31A peptide reveals a novel target recognition mechanism of ALG-2.

Takahashi T, Kojima K, Zhang W, Sasaki K, Ito M, Suzuki H, Kawasaki M, Wakatsuki S, Takahara T, Shibata H, Maki M.

Int J Mol Sci. 2015 Feb 6;16(2):3677-99. doi: 10.3390/ijms16023677.

38.

Demonstration of single-crystal self-seeded two-color x-ray free-electron lasers.

Lutman AA, Decker FJ, Arthur J, Chollet M, Feng Y, Hastings J, Huang Z, Lemke H, Nuhn HD, Marinelli A, Turner JL, Wakatsuki S, Welch J, Zhu D.

Phys Rev Lett. 2014 Dec 19;113(25):254801. Epub 2014 Dec 18.

PMID:
25554887
39.

PLEKHM1 regulates autophagosome-lysosome fusion through HOPS complex and LC3/GABARAP proteins.

McEwan DG, Popovic D, Gubas A, Terawaki S, Suzuki H, Stadel D, Coxon FP, Miranda de Stegmann D, Bhogaraju S, Maddi K, Kirchof A, Gatti E, Helfrich MH, Wakatsuki S, Behrends C, Pierre P, Dikic I.

Mol Cell. 2015 Jan 8;57(1):39-54. doi: 10.1016/j.molcel.2014.11.006. Epub 2014 Dec 11.

40.

Gliotoxin suppresses NF-κB activation by selectively inhibiting linear ubiquitin chain assembly complex (LUBAC).

Sakamoto H, Egashira S, Saito N, Kirisako T, Miller S, Sasaki Y, Matsumoto T, Shimonishi M, Komatsu T, Terai T, Ueno T, Hanaoka K, Kojima H, Okabe T, Wakatsuki S, Iwai K, Nagano T.

ACS Chem Biol. 2015 Mar 20;10(3):675-81. doi: 10.1021/cb500653y. Epub 2014 Dec 17.

PMID:
25494483
41.

Goniometer-based femtosecond crystallography with X-ray free electron lasers.

Cohen AE, Soltis SM, González A, Aguila L, Alonso-Mori R, Barnes CO, Baxter EL, Brehmer W, Brewster AS, Brunger AT, Calero G, Chang JF, Chollet M, Ehrensberger P, Eriksson TL, Feng Y, Hattne J, Hedman B, Hollenbeck M, Holton JM, Keable S, Kobilka BK, Kovaleva EG, Kruse AC, Lemke HT, Lin G, Lyubimov AY, Manglik A, Mathews II, McPhillips SE, Nelson S, Peters JW, Sauter NK, Smith CA, Song J, Stevenson HP, Tsai Y, Uervirojnangkoorn M, Vinetsky V, Wakatsuki S, Weis WI, Zadvornyy OA, Zeldin OB, Zhu D, Hodgson KO.

Proc Natl Acad Sci U S A. 2014 Dec 2;111(48):17122-7. doi: 10.1073/pnas.1418733111. Epub 2014 Oct 31.

42.

Expanded potential of seleno-carbohydrates as a molecular tool for X-ray structural determination of a carbohydrate-protein complex with single/multi-wavelength anomalous dispersion phasing.

Suzuki T, Makyio H, Ando H, Komura N, Menjo M, Yamada Y, Imamura A, Ishida H, Wakatsuki S, Kato R, Kiso M.

Bioorg Med Chem. 2014 Apr 1;22(7):2090-101. doi: 10.1016/j.bmc.2014.02.023. Epub 2014 Feb 25.

PMID:
24631362
43.

Tuning mechanism-based inactivators of neuraminidases: mechanistic and structural insights.

Buchini S, Gallat FX, Greig IR, Kim JH, Wakatsuki S, Chavas LM, Withers SG.

Angew Chem Int Ed Engl. 2014 Mar 24;53(13):3382-6. doi: 10.1002/anie.201309675. Epub 2014 Mar 3.

PMID:
24591206
44.

Mechanism underlying IκB kinase activation mediated by the linear ubiquitin chain assembly complex.

Fujita H, Rahighi S, Akita M, Kato R, Sasaki Y, Wakatsuki S, Iwai K.

Mol Cell Biol. 2014 Apr;34(7):1322-35. doi: 10.1128/MCB.01538-13. Epub 2014 Jan 27.

45.

Structural basis of the autophagy-related LC3/Atg13 LIR complex: recognition and interaction mechanism.

Suzuki H, Tabata K, Morita E, Kawasaki M, Kato R, Dobson RC, Yoshimori T, Wakatsuki S.

Structure. 2014 Jan 7;22(1):47-58. doi: 10.1016/j.str.2013.09.023. Epub 2013 Nov 27.

46.

Na+/H+ exchangers induce autophagy in neurons and inhibit polyglutamine-induced aggregate formation.

Togashi K, Wakatsuki S, Furuno A, Tokunaga S, Nagai Y, Araki T.

PLoS One. 2013 Nov 21;8(11):e81313. doi: 10.1371/journal.pone.0081313. eCollection 2013.

47.

Neuregulin-1/glial growth factor stimulates Schwann cell migration by inducing α5 β1 integrin-ErbB2-focal adhesion kinase complex formation.

Wakatsuki S, Araki T, Sehara-Fujisawa A.

Genes Cells. 2014 Jan;19(1):66-77. doi: 10.1111/gtc.12108. Epub 2013 Nov 20.

48.

Improvements toward highly accurate diffraction experiments at the macromolecular micro-crystallography beamline BL-17A.

Yamada Y, Chavas LM, Igarashi N, Hiraki M, Wakatsuki S, Matsugaki N.

J Synchrotron Radiat. 2013 Nov;20(Pt 6):938-42. doi: 10.1107/S0909049513022875. Epub 2013 Oct 8.

49.

Improvement of an automated protein crystal exchange system PAM for high-throughput data collection.

Hiraki M, Yamada Y, Chavas LM, Wakatsuki S, Matsugaki N.

J Synchrotron Radiat. 2013 Nov;20(Pt 6):890-3. doi: 10.1107/S0909049513021067. Epub 2013 Oct 1.

50.

Structures of an ATP-independent Lon-like protease and its complexes with covalent inhibitors.

Liao JH, Ihara K, Kuo CI, Huang KF, Wakatsuki S, Wu SH, Chang CI.

Acta Crystallogr D Biol Crystallogr. 2013 Aug;69(Pt 8):1395-402. doi: 10.1107/S0907444913008214. Epub 2013 Jul 13.

PMID:
23897463

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