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Items: 1 to 50 of 229

1.

Evolutionary stability of the lysis-lysogeny decision: why be virulent?

Wahl LM, Betti MI, Dick DW, Pattenden T, Puccini AJ.

Evolution. 2018 Nov 15. doi: 10.1111/evo.13648. [Epub ahead of print]

PMID:
30430551
2.

Evolutionary emergence of infectious diseases in heterogeneous host populations.

Chabas H, Lion S, Nicot A, Meaden S, van Houte S, Moineau S, Wahl LM, Westra ER, Gandon S.

PLoS Biol. 2018 Sep 24;16(9):e2006738. doi: 10.1371/journal.pbio.2006738. eCollection 2018 Sep.

3.

Effects of Transmission Bottlenecks on the Diversity of Influenza A Virus.

Sigal D, Reid JNS, Wahl LM.

Genetics. 2018 Nov;210(3):1075-1088. doi: 10.1534/genetics.118.301510. Epub 2018 Sep 4.

PMID:
30181193
4.

Reproduction Number and Asymptotic Stability for the Dynamics of a Honey Bee Colony with Continuous Age Structure.

Betti MI, Wahl LM, Zamir M.

Bull Math Biol. 2017 Jul;79(7):1586-1611. doi: 10.1007/s11538-017-0300-7. Epub 2017 Jun 19.

PMID:
28631108
5.

Prophage as a genetic reservoir: Promoting diversity and driving innovation in the host community.

Nadeem A, Wahl LM.

Evolution. 2017 Aug;71(8):2080-2089. doi: 10.1111/evo.13287. Epub 2017 Jun 20.

PMID:
28590013
6.

Mathematical modelling of CRISPR-Cas system effects on biofilm formation.

Ali Q, Wahl LM.

J Biol Dyn. 2017 Aug;11(sup2):264-284. doi: 10.1080/17513758.2017.1314025. Epub 2017 Apr 20.

PMID:
28426329
7.

Prophage Provide a Safe Haven for Adaptive Exploration in Temperate Viruses.

Wahl LM, Pattenden T.

Genetics. 2017 May;206(1):407-416. doi: 10.1534/genetics.116.197541. Epub 2017 Mar 17.

8.

Bee++: An Object-Oriented, Agent-Based Simulator for Honey Bee Colonies.

Betti M, LeClair J, Wahl LM, Zamir M.

Insects. 2017 Mar 10;8(1). pii: E31. doi: 10.3390/insects8010031.

9.

Age structure is critical to the population dynamics and survival of honeybee colonies.

Betti MI, Wahl LM, Zamir M.

R Soc Open Sci. 2016 Nov 16;3(11):160444. doi: 10.1098/rsos.160444. eCollection 2016 Nov.

10.

The dynamics of mobile promoters: Enhanced stability in promoter regions.

Rabbani M, Wahl LM.

J Theor Biol. 2016 Oct 21;407:401-408. doi: 10.1016/j.jtbi.2016.07.030. Epub 2016 Jul 25.

PMID:
27460588
11.

Backward bifurcations, turning points and rich dynamics in simple disease models.

Zhang W, Wahl LM, Yu P.

J Math Biol. 2016 Oct;73(4):947-76. doi: 10.1007/s00285-016-0976-6. Epub 2016 Feb 26.

PMID:
26921202
12.

Network analysis of human fMRI data suggests modular restructuring after simulated acquired brain injury.

Ruiz Vargas E, Mitchell DG, Greening SG, Wahl LM.

Med Biol Eng Comput. 2016 Jan;54(1):235-48. doi: 10.1007/s11517-015-1396-2. Epub 2015 Oct 13.

PMID:
26463519
13.

Extinction probabilities and stationary distributions of mobile genetic elements in prokaryotes: The birth-death-diversification model.

Drakos NE, Wahl LM.

Theor Popul Biol. 2015 Dec;106:22-31. doi: 10.1016/j.tpb.2015.09.001. Epub 2015 Sep 14.

PMID:
26383090
14.

Survival probability of beneficial mutations in bacterial batch culture.

Wahl LM, Zhu AD.

Genetics. 2015 May;200(1):309-20. doi: 10.1534/genetics.114.172890. Epub 2015 Mar 9.

15.

Cytokine-induced monocyte MMP-1 is negatively regulated by GSK-3 through a p38 MAPK-mediated decrease in ERK1/2 MAPK activation.

Zhang Y, Wahl LM.

J Leukoc Biol. 2015 May;97(5):921-927. doi: 10.1189/jlb.3A0413-235R. Epub 2015 Feb 24.

16.

Effects of infection on honey bee population dynamics: a model.

Betti MI, Wahl LM, Zamir M.

PLoS One. 2014 Oct 16;9(10):e110237. doi: 10.1371/journal.pone.0110237. eCollection 2014.

17.

Birth, death, and diversification of mobile promoters in prokaryotes.

van Passel MW, Nijveen H, Wahl LM.

Genetics. 2014 May;197(1):291-9. doi: 10.1534/genetics.114.162883. Epub 2014 Feb 27.

18.

Rates of transposition in Escherichia coli.

Sousa A, Bourgard C, Wahl LM, Gordo I.

Biol Lett. 2013 Dec 4;9(6):20130838. doi: 10.1098/rsbl.2013.0838. Print 2013.

19.

Heme oxygenase-1 induction alters chemokine regulation and ameliorates human immunodeficiency virus-type-1 infection in lipopolysaccharide-stimulated macrophages.

Zhou ZH, Kumari N, Nekhai S, Clouse KA, Wahl LM, Yamada KM, Dhawan S.

Biochem Biophys Res Commun. 2013 Jun 7;435(3):373-7. doi: 10.1016/j.bbrc.2013.04.095. Epub 2013 May 9.

20.

The time distribution of sulfadoxine-pyrimethamine protection from malaria.

Akbari S, Vaidya NK, Wahl LM.

Bull Math Biol. 2012 Nov;74(11):2733-51. doi: 10.1007/s11538-012-9775-4. Epub 2012 Oct 19.

PMID:
23081725
21.

Model and test in a fungus of the probability that beneficial mutations survive drift.

Gifford DR, de Visser JA, Wahl LM.

Biol Lett. 2013 Feb 23;9(1):20120310. doi: 10.1098/rsbl.2012.0310. Epub 2012 Jun 27.

22.

Transmission dynamics of the recently-identified BYD virus causing duck egg-drop syndrome.

Vaidya NK, Wang FB, Zou X, Wahl LM.

PLoS One. 2012;7(4):e35161. doi: 10.1371/journal.pone.0035161. Epub 2012 Apr 18.

23.

Fixation when N and s vary: classic approaches give elegant new results.

Wahl LM.

Genetics. 2011 Aug;188(4):783-5. doi: 10.1534/genetics.111.131748. No abstract available.

25.

Estimating the evidence of selection and the reliability of inference in unigenic evolution.

Fernandes AD, Kleinstiver BP, Edgell DR, Wahl LM, Gloor GB.

Algorithms Mol Biol. 2010 Nov 8;5:35. doi: 10.1186/1748-7188-5-35.

26.

Involvement of TLR2 and TLR4 in cell responses to Rickettsia akari.

Quevedo-Diaz MA, Song C, Xiong Y, Chen H, Wahl LM, Radulovic S, Medvedev AE.

J Leukoc Biol. 2010 Oct;88(4):675-85. doi: 10.1189/jlb.1009674. Epub 2010 Jul 8.

27.

Identifying and seeing beyond multiple sequence alignment errors using intra-molecular protein covariation.

Dickson RJ, Wahl LM, Fernandes AD, Gloor GB.

PLoS One. 2010 Jun 28;5(6):e11082. doi: 10.1371/journal.pone.0011082.

28.

The adaptation rate of asexuals: deleterious mutations, clonal interference and population bottlenecks.

Campos PR, Wahl LM.

Evolution. 2010 Jul;64(7):1973-83. doi: 10.1111/j.1558-5646.2010.00981.x. Epub 2010 Feb 26.

PMID:
20199567
29.

Self-tolerance and autoimmunity in a regulatory T cell model.

Alexander HK, Wahl LM.

Bull Math Biol. 2011 Jan;73(1):33-71. doi: 10.1007/s11538-010-9519-2. Epub 2010 Mar 2. Review.

PMID:
20195912
30.

Reconciling conflicting clinical studies of antioxidant supplementation as HIV therapy: a mathematical approach.

van Gaalen RD, Wahl LM.

BMC Public Health. 2009 Nov 18;9 Suppl 1:S12. doi: 10.1186/1471-2458-9-S1-S12.

31.

Adaptation rates of lytic viruses depend critically on whether host cells survive the bottleneck.

Patwa Z, Wahl LM.

Evolution. 2010 Apr 1;64(4):1166-72. doi: 10.1111/j.1558-5646.2009.00887.x. Epub 2009 Nov 6.

PMID:
19895555
32.

Endotoxin tolerance dysregulates MyD88- and Toll/IL-1R domain-containing adapter inducing IFN-beta-dependent pathways and increases expression of negative regulators of TLR signaling.

Piao W, Song C, Chen H, Diaz MA, Wahl LM, Fitzgerald KA, Li L, Medvedev AE.

J Leukoc Biol. 2009 Oct;86(4):863-75. doi: 10.1189/jlb.0309189. Epub 2009 Aug 5.

33.

Stimulated stromal cells induce gamma-globin gene expression in erythroid cells via nitric oxide production.

Cokić VP, Beleslin-Cokić BB, Smith RD, Economou AP, Wahl LM, Noguchi CT, Schechter AN.

Exp Hematol. 2009 Oct;37(10):1230-7. doi: 10.1016/j.exphem.2009.06.009. Epub 2009 Jul 2.

34.

The impact of host-cell dynamics on the fixation probability for lytic viruses.

Patwa Z, Wahl LM.

J Theor Biol. 2009 Aug 21;259(4):799-810. doi: 10.1016/j.jtbi.2009.05.008. Epub 2009 May 21.

PMID:
19464301
35.

The effects of population bottlenecks on clonal interference, and the adaptation effective population size.

Campos PR, Wahl LM.

Evolution. 2009 Apr;63(4):950-8. doi: 10.1111/j.1558-5646.2008.00595.x. Epub 2009 Jan 2.

PMID:
19210533
36.

Reproducibility of standardized uptake value measurements determined by 18F-FDG PET in malignant tumors.

Nahmias C, Wahl LM.

J Nucl Med. 2008 Nov;49(11):1804-8. doi: 10.2967/jnumed.108.054239. Epub 2008 Oct 16. Erratum in: J Nucl Med. 2009 Jan;50(1):17.

37.

Fixation probability for lytic viruses: the attachment-lysis model.

Patwa Z, Wahl LM.

Genetics. 2008 Sep;180(1):459-70. doi: 10.1534/genetics.108.090555. Epub 2008 Aug 30.

38.

The division of labor: genotypic versus phenotypic specialization.

Wahl LM.

Am Nat. 2002 Jul;160(1):135-45. doi: 10.1086/340601.

PMID:
18707504
39.

The fixation probability of beneficial mutations.

Patwa Z, Wahl LM.

J R Soc Interface. 2008 Nov 6;5(28):1279-89. doi: 10.1098/rsif.2008.0248. Review.

40.

Estimating the optimal bottleneck ratio for experimental evolution: the burst-death model.

Hubbarde JE, Wahl LM.

Math Biosci. 2008 Jun;213(2):113-8. doi: 10.1016/j.mbs.2008.03.006. Epub 2008 Apr 4.

PMID:
18472113
41.

Isolation and purification of human intestinal macrophages.

Smythies LE, Wahl LM, Smith PD.

Curr Protoc Immunol. 2006 Jan;Chapter 7:Unit 7.6B. doi: 10.1002/0471142735.im0706bs70.

PMID:
18432978
42.

Isolation of human monocyte populations.

Wahl LM, Wahl SM, Smythies LE, Smith PD.

Curr Protoc Immunol. 2006 Jan;Chapter 7:Unit 7.6A. doi: 10.1002/0471142735.im0706as70.

PMID:
18432977
43.

Fixation probabilities depend on life history: fecundity, generation time and survival in a burst-death model.

Alexander HK, Wahl LM.

Evolution. 2008 Jul;62(7):1600-9. doi: 10.1111/j.1558-5646.2008.00396.x.

PMID:
18410538
44.

Tyrosine phosphorylation of MyD88 adapter-like (Mal) is critical for signal transduction and blocked in endotoxin tolerance.

Piao W, Song C, Chen H, Wahl LM, Fitzgerald KA, O'Neill LA, Medvedev AE.

J Biol Chem. 2008 Feb 8;283(6):3109-19. Epub 2007 Dec 10.

45.

Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction.

Dunn SD, Wahl LM, Gloor GB.

Bioinformatics. 2008 Feb 1;24(3):333-40. Epub 2007 Dec 5.

PMID:
18057019
46.

The broad antibacterial activity of the natural antibody repertoire is due to polyreactive antibodies.

Zhou ZH, Zhang Y, Hu YF, Wahl LM, Cisar JO, Notkins AL.

Cell Host Microbe. 2007 Mar 15;1(1):51-61.

48.

Drug-sparing regimens for HIV combination therapy: benefits predicted for "drug coasting".

Krakovska O, Wahl LM.

Bull Math Biol. 2007 Nov;69(8):2627-47. Epub 2007 Jun 20.

PMID:
17578648
49.

Fixation probabilities when generation times are variable: the burst death model.

Hubbarde JE, Wild G, Wahl LM.

Genetics. 2007 Jul;176(3):1703-12. Epub 2007 May 4.

50.

Time course of early response to chemotherapy in non-small cell lung cancer patients with 18F-FDG PET/CT.

Nahmias C, Hanna WT, Wahl LM, Long MJ, Hubner KF, Townsend DW.

J Nucl Med. 2007 May;48(5):744-51.

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