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Deep sequencing of biofilm microbiomes on dental composite materials.

Conrads G, Wendt LK, Hetrodt F, Deng ZL, Pieper D, Abdelbary MMH, Barg A, Wagner-Döbler I, Apel C.

J Oral Microbiol. 2019 May 14;11(1):1617013. doi: 10.1080/20002297.2019.1617013. eCollection 2019.


Integrated Transcriptional Regulatory Network of Quorum Sensing, Replication Control, and SOS Response in Dinoroseobacter shibae.

Koppenhöfer S, Wang H, Scharfe M, Kaever V, Wagner-Döbler I, Tomasch J.

Front Microbiol. 2019 Apr 12;10:803. doi: 10.3389/fmicb.2019.00803. eCollection 2019.


An Unprecedented Medium-Chain Diunsaturated N-acylhomoserine Lactone from Marine Roseobacter Group Bacteria.

Ziesche L, Wolter L, Wang H, Brinkhoff T, Pohlner M, Engelen B, Wagner-Döbler I, Schulz S.

Mar Drugs. 2018 Dec 31;17(1). pii: E20. doi: 10.3390/md17010020.


The complete genome sequence of Rhodobaca barguzinensis alga05 (DSM 19920) documents its adaptation for life in soda lakes.

Kopejtka K, Tomasch J, Bunk B, Spröer C, Wagner-Döbler I, Koblížek M.

Extremophiles. 2018 Nov;22(6):839-849. doi: 10.1007/s00792-018-1041-8. Epub 2018 Jul 18.


Metatranscriptome Analysis of the Vaginal Microbiota Reveals Potential Mechanisms for Protection against Metronidazole in Bacterial Vaginosis.

Deng ZL, Gottschick C, Bhuju S, Masur C, Abels C, Wagner-Döbler I.

mSphere. 2018 Jun 6;3(3). pii: e00262-18. doi: 10.1128/mSphereDirect.00262-18. Print 2018 Jun 27.


Horizontal operon transfer, plasmids, and the evolution of photosynthesis in Rhodobacteraceae.

Brinkmann H, Göker M, Koblížek M, Wagner-Döbler I, Petersen J.

ISME J. 2018 Aug;12(8):1994-2010. doi: 10.1038/s41396-018-0150-9. Epub 2018 May 24.


Screening for inhibitors of mutacin synthesis in Streptococcus mutans using fluorescent reporter strains.

Premnath P, Reck M, Wittstein K, Stadler M, Wagner-Döbler I.

BMC Microbiol. 2018 Mar 27;18(1):24. doi: 10.1186/s12866-018-1170-3.


Worlds Apart - Transcriptome Profiles of Key Oral Microbes in the Periodontal Pocket Compared to Single Laboratory Culture Reflect Synergistic Interactions.

Deng ZL, Sztajer H, Jarek M, Bhuju S, Wagner-Döbler I.

Front Microbiol. 2018 Feb 6;9:124. doi: 10.3389/fmicb.2018.00124. eCollection 2018.


Packaging of Dinoroseobacter shibae DNA into Gene Transfer Agent Particles Is Not Random.

Tomasch J, Wang H, Hall ATK, Patzelt D, Preusse M, Petersen J, Brinkmann H, Bunk B, Bhuju S, Jarek M, Geffers R, Lang AS, Wagner-Döbler I.

Genome Biol Evol. 2018 Jan 1;10(1):359-369. doi: 10.1093/gbe/evy005.


Oxygenated N-Acyl Alanine Methyl Esters (NAMEs) from the Marine Bacterium Roseovarius tolerans EL-164.

Bruns H, Herrmann J, Müller R, Wang H, Wagner Döbler I, Schulz S.

J Nat Prod. 2018 Jan 26;81(1):131-139. doi: 10.1021/acs.jnatprod.7b00757. Epub 2017 Dec 20.


The natural product carolacton inhibits folate-dependent C1 metabolism by targeting FolD/MTHFD.

Fu C, Sikandar A, Donner J, Zaburannyi N, Herrmann J, Reck M, Wagner-Döbler I, Koehnke J, Müller R.

Nat Commun. 2017 Nov 16;8(1):1529. doi: 10.1038/s41467-017-01671-5.


The carolactam strategy is ineffective: synthesis and biological evaluation of carolactam.

Ammermann J, Schmidt T, Donner J, Reck M, Dalton M, Stumpp N, Stiesch M, Wagner-Döbler I, Kirschning A.

Org Biomol Chem. 2017 Oct 18;15(40):8553-8558. doi: 10.1039/c7ob02060k.


The Biofilm Inhibitor Carolacton Enters Gram-Negative Cells: Studies Using a TolC-Deficient Strain of Escherichia coli.

Donner J, Reck M, Bunk B, Jarek M, App CB, Meier-Kolthoff JP, Overmann J, Müller R, Kirschning A, Wagner-Döbler I.

mSphere. 2017 Sep 27;2(5). pii: e00375-17. doi: 10.1128/mSphereDirect.00375-17. eCollection 2017 Sep-Oct.


Treatment of biofilms in bacterial vaginosis by an amphoteric tenside pessary-clinical study and microbiota analysis.

Gottschick C, Deng ZL, Vital M, Masur C, Abels C, Pieper DH, Rohde M, Mendling W, Wagner-Döbler I.

Microbiome. 2017 Sep 13;5(1):119. doi: 10.1186/s40168-017-0326-y.


The urinary microbiota of men and women and its changes in women during bacterial vaginosis and antibiotic treatment.

Gottschick C, Deng ZL, Vital M, Masur C, Abels C, Pieper DH, Wagner-Döbler I.

Microbiome. 2017 Aug 14;5(1):99. doi: 10.1186/s40168-017-0305-3.


Plasmid Transfer in the Ocean - A Case Study from the Roseobacter Group.

Petersen J, Wagner-Döbler I.

Front Microbiol. 2017 Jul 18;8:1350. doi: 10.3389/fmicb.2017.01350. eCollection 2017.


Dysbiosis in chronic periodontitis: Key microbial players and interactions with the human host.

Deng ZL, Szafrański SP, Jarek M, Bhuju S, Wagner-Döbler I.

Sci Rep. 2017 Jun 16;7(1):3703. doi: 10.1038/s41598-017-03804-8.


Dual function of tropodithietic acid as antibiotic and signaling molecule in global gene regulation of the probiotic bacterium Phaeobacter inhibens.

Beyersmann PG, Tomasch J, Son K, Stocker R, Göker M, Wagner-Döbler I, Simon M, Brinkhoff T.

Sci Rep. 2017 Apr 7;7(1):730. doi: 10.1038/s41598-017-00784-7.


Fixation of CO2 using the ethylmalonyl-CoA pathway in the photoheterotrophic marine bacterium Dinoroseobacter shibae.

Bill N, Tomasch J, Riemer A, Müller K, Kleist S, Schmidt-Hohagen K, Wagner-Döbler I, Schomburg D.

Environ Microbiol. 2017 Jul;19(7):2645-2660. doi: 10.1111/1462-2920.13746. Epub 2017 Jul 7.


Quorum sensing of Streptococcus mutans is activated by Aggregatibacter actinomycetemcomitans and by the periodontal microbiome.

Szafrański SP, Deng ZL, Tomasch J, Jarek M, Bhuju S, Rohde M, Sztajer H, Wagner-Döbler I.

BMC Genomics. 2017 Mar 20;18(1):238. doi: 10.1186/s12864-017-3618-5.


Complete Genome Sequences of Three Multidrug-Resistant Clinical Isolates of Streptococcus pneumoniae Serotype 19A with Different Susceptibilities to the Myxobacterial Metabolite Carolacton.

Donner J, Bunk B, Schober I, Spröer C, Bergmann S, Jarek M, Overmann J, Wagner-Döbler I.

Genome Announc. 2017 Feb 16;5(7). pii: e01641-16. doi: 10.1128/genomeA.01641-16.


Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats.

Simon M, Scheuner C, Meier-Kolthoff JP, Brinkhoff T, Wagner-Döbler I, Ulbrich M, Klenk HP, Schomburg D, Petersen J, Göker M.

ISME J. 2017 Jun;11(6):1483-1499. doi: 10.1038/ismej.2016.198. Epub 2017 Jan 20.


The biofilm inhibitor Carolacton inhibits planktonic growth of virulent pneumococci via a conserved target.

Donner J, Reck M, Bergmann S, Kirschning A, Müller R, Wagner-Döbler I.

Sci Rep. 2016 Jul 11;6:29677. doi: 10.1038/srep29677.


Gene Flow Across Genus Barriers - Conjugation of Dinoroseobacter shibae's 191-kb Killer Plasmid into Phaeobacter inhibens and AHL-mediated Expression of Type IV Secretion Systems.

Patzelt D, Michael V, Päuker O, Ebert M, Tielen P, Jahn D, Tomasch J, Petersen J, Wagner-Döbler I.

Front Microbiol. 2016 May 31;7:742. doi: 10.3389/fmicb.2016.00742. eCollection 2016.


Carolacton Treatment Causes Delocalization of the Cell Division Proteins PknB and DivIVa in Streptococcus mutans in vivo.

Reck M, Wagner-Döbler I.

Front Microbiol. 2016 May 11;7:684. doi: 10.3389/fmicb.2016.00684. eCollection 2016.


Co-occurrence Analysis of Microbial Taxa in the Atlantic Ocean Reveals High Connectivity in the Free-Living Bacterioplankton.

Milici M, Deng ZL, Tomasch J, Decelle J, Wos-Oxley ML, Wang H, Jáuregui R, Plumeier I, Giebel HA, Badewien TH, Wurst M, Pieper DH, Simon M, Wagner-Döbler I.

Front Microbiol. 2016 May 6;7:649. doi: 10.3389/fmicb.2016.00649. eCollection 2016.


Bacterioplankton Biogeography of the Atlantic Ocean: A Case Study of the Distance-Decay Relationship.

Milici M, Tomasch J, Wos-Oxley ML, Decelle J, Jáuregui R, Wang H, Deng ZL, Plumeier I, Giebel HA, Badewien TH, Wurst M, Pieper DH, Simon M, Wagner-Döbler I.

Front Microbiol. 2016 Apr 26;7:590. doi: 10.3389/fmicb.2016.00590. eCollection 2016.


Biofilm transplantation in the deep sea.

Wagner-Döbler I.

Mol Ecol. 2016 May;25(9):1905-7. doi: 10.1111/mec.13612.


Screening of Compounds against Gardnerella vaginalis Biofilms.

Gottschick C, Szafranski SP, Kunze B, Sztajer H, Masur C, Abels C, Wagner-Döbler I.

PLoS One. 2016 Apr 25;11(4):e0154086. doi: 10.1371/journal.pone.0154086. eCollection 2016.


Discovery of antiviral molecules for dengue: In silico search and biological evaluation.

Cabarcas-Montalvo M, Maldonado-Rojas W, Montes-Grajales D, Bertel-Sevilla A, Wagner-Döbler I, Sztajer H, Reck M, Flechas-Alarcon M, Ocazionez R, Olivero-Verbel J.

Eur J Med Chem. 2016 Mar 3;110:87-97. doi: 10.1016/j.ejmech.2015.12.030. Epub 2016 Jan 7.


Low diversity of planktonic bacteria in the tropical ocean.

Milici M, Tomasch J, Wos-Oxley ML, Wang H, Jáuregui R, Camarinha-Silva A, Deng ZL, Plumeier I, Giebel HA, Wurst M, Pieper DH, Simon M, Wagner-Döbler I.

Sci Rep. 2016 Jan 11;6:19054. doi: 10.1038/srep19054.


Identification of Genetic Modules Mediating the Jekyll and Hyde Interaction of Dinoroseobacter shibae with the Dinoflagellate Prorocentrum minimum.

Wang H, Tomasch J, Michael V, Bhuju S, Jarek M, Petersen J, Wagner-Döbler I.

Front Microbiol. 2015 Nov 13;6:1262. doi: 10.3389/fmicb.2015.01262. eCollection 2015.


Proteorhodopsin light-enhanced growth linked to vitamin-B1 acquisition in marine Flavobacteria.

Gómez-Consarnau L, González JM, Riedel T, Jaenicke S, Wagner-Döbler I, Sañudo-Wilhelmy SA, Fuhrman JA.

ISME J. 2016 May;10(5):1102-12. doi: 10.1038/ismej.2015.196. Epub 2015 Nov 17.


Draft Genome Sequence of Roseovarius tolerans EL-164, a Producer of N-Acylated Alanine Methyl Esters and N-Acylhomoserine Lactones.

Voget S, Bruns H, Wagner-Döbler I, Schulz S, Daniel R.

Genome Announc. 2015 Sep 24;3(5). pii: e01096-15. doi: 10.1128/genomeA.01096-15.


Functional biomarkers for chronic periodontitis and insights into the roles of Prevotella nigrescens and Fusobacterium nucleatum; a metatranscriptome analysis.

Szafrański SP, Deng ZL, Tomasch J, Jarek M, Bhuju S, Meisinger C, Kühnisch J, Sztajer H, Wagner-Döbler I.

NPJ Biofilms Microbiomes. 2015 Sep 23;1:15017. doi: 10.1038/npjbiofilms.2015.17. eCollection 2015.


Homoserine Lactones, Methyl Oligohydroxybutyrates, and Other Extracellular Metabolites of Macroalgae-Associated Bacteria of the Roseobacter Clade: Identification and Functions.

Ziesche L, Bruns H, Dogs M, Wolter L, Mann F, Wagner-Döbler I, Brinkhoff T, Schulz S.

Chembiochem. 2015 Sep 21;16(14):2094-107. doi: 10.1002/cbic.201500189. Epub 2015 Aug 19.


The Alternative Sigma Factor SigX Controls Bacteriocin Synthesis and Competence, the Two Quorum Sensing Regulated Traits in Streptococcus mutans.

Reck M, Tomasch J, Wagner-Döbler I.

PLoS Genet. 2015 Jul 9;11(7):e1005353. doi: 10.1371/journal.pgen.1005353. eCollection 2015 Jul.


Stool metatranscriptomics: A technical guideline for mRNA stabilisation and isolation.

Reck M, Tomasch J, Deng Z, Jarek M, Husemann P, Wagner-Döbler I; COMBACTE Consortium.

BMC Genomics. 2015 Jul 4;16:494. doi: 10.1186/s12864-015-1694-y.


Synthesis of new carolacton derivatives and their activity against biofilms of oral bacteria.

Stumpp N, Premnath P, Schmidt T, Ammermann J, Dräger G, Reck M, Jansen R, Stiesch M, Wagner-Döbler I, Kirschning A.

Org Biomol Chem. 2015 May 28;13(20):5765-74. doi: 10.1039/c5ob00460h. Epub 2015 Apr 22.


Oxidative stress and starvation in Dinoroseobacter shibae: the role of extrachromosomal elements.

Soora M, Tomasch J, Wang H, Michael V, Petersen J, Engelen B, Wagner-Döbler I, Cypionka H.

Front Microbiol. 2015 Mar 25;6:233. doi: 10.3389/fmicb.2015.00233. eCollection 2015.


Large-Scale 13C flux profiling reveals conservation of the Entner-Doudoroff pathway as a glycolytic strategy among marine bacteria that use glucose.

Klingner A, Bartsch A, Dogs M, Wagner-Döbler I, Jahn D, Simon M, Brinkhoff T, Becker J, Wittmann C.

Appl Environ Microbiol. 2015 Apr;81(7):2408-22. doi: 10.1128/AEM.03157-14. Epub 2015 Jan 23.


Comparing the cariogenic species Streptococcus sobrinus and S. mutans on whole genome level.

Conrads G, de Soet JJ, Song L, Henne K, Sztajer H, Wagner-Döbler I, Zeng AP.

J Oral Microbiol. 2014 Dec 3;6:26189. doi: 10.3402/jom.v6.26189. eCollection 2014.


High-resolution taxonomic profiling of the subgingival microbiome for biomarker discovery and periodontitis diagnosis.

Szafranski SP, Wos-Oxley ML, Vilchez-Vargas R, Jáuregui R, Plumeier I, Klawonn F, Tomasch J, Meisinger C, Kühnisch J, Sztajer H, Pieper DH, Wagner-Döbler I.

Appl Environ Microbiol. 2015 Feb;81(3):1047-58. doi: 10.1128/AEM.03534-14. Epub 2014 Dec 1.


A dual-species co-cultivation system to study the interactions between Roseobacters and dinoflagellates.

Wang H, Tomasch J, Jarek M, Wagner-Döbler I.

Front Microbiol. 2014 Jun 25;5:311. doi: 10.3389/fmicb.2014.00311. eCollection 2014.


Construction and verification of the transcriptional regulatory response network of Streptococcus mutans upon treatment with the biofilm inhibitor carolacton.

Sudhakar P, Reck M, Wang W, He FQ, Wagner-Döbler I, Zeng AP.

BMC Genomics. 2014 May 12;15:362. doi: 10.1186/1471-2164-15-362. Erratum in: BMC Genomics. 2014;15:739. Dobler, Irene W [corrected to Wagner-Döbler, Irene].


Cross-feeding and interkingdom communication in dual-species biofilms of Streptococcus mutans and Candida albicans.

Sztajer H, Szafranski SP, Tomasch J, Reck M, Nimtz M, Rohde M, Wagner-Döbler I.

ISME J. 2014 Nov;8(11):2256-71. doi: 10.1038/ismej.2014.73. Epub 2014 May 13.


The CtrA phosphorelay integrates differentiation and communication in the marine alphaproteobacterium Dinoroseobacter shibae.

Wang H, Ziesche L, Frank O, Michael V, Martin M, Petersen J, Schulz S, Wagner-Döbler I, Tomasch J.

BMC Genomics. 2014 Feb 13;15:130. doi: 10.1186/1471-2164-15-130.


Identification of new N-acylhomoserine lactone signalling compounds of Dinoroseobacter shibae DFL-12(T) by overexpression of luxI genes.

Neumann A, Patzelt D, Wagner-Döbler I, Schulz S.

Chembiochem. 2013 Nov 25;14(17):2355-61. doi: 10.1002/cbic.201300424. Epub 2013 Nov 11.


Dental composite materials containing carolacton inhibit biofilm growth of Streptococcus mutans.

Apel C, Barg A, Rheinberg A, Conrads G, Wagner-Döbler I.

Dent Mater. 2013 Nov;29(11):1188-99. doi: 10.1016/ Epub 2013 Oct 4.


N-acylated alanine methyl esters (NAMEs) from Roseovarius tolerans, structural analogs of quorum-sensing autoinducers, N-acylhomoserine lactones.

Bruns H, Thiel V, Voget S, Patzelt D, Daniel R, Wagner-Döbler I, Schulz S.

Chem Biodivers. 2013 Sep;10(9):1559-73. doi: 10.1002/cbdv.201300210.


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