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Reconstructing signaling pathways using regular language constrained paths.

Wagner MJ, Pratapa A, Murali TM.

Bioinformatics. 2019 Jul 15;35(14):i624-i633. doi: 10.1093/bioinformatics/btz360.


Love, Sanity, or Medical School: A Memoir. By Stephanie Benjamin, MD. Seattle: Amazon, 2019; 355 pp; $14.99 (softcover).

Khuder S, Figg BJ, Wagner MJ.

Acad Emerg Med. 2019 Aug;26(8):959-961. doi: 10.1111/acem.13776. Epub 2019 Jun 11. Review. No abstract available.


A Genetic Locus on Chromosome 2q24 Predicting Peripheral Neuropathy Risk in Type 2 Diabetes: Results From the ACCORD and BARI 2D Studies.

Tang Y, Lenzini PA, Pop-Busui R, Ray PR, Campbell H, Perkins BA, Callaghan B, Wagner MJ, Motsinger-Reif AA, Buse JB, Price TJ, Mychaleckyj JC, Cresci S, Shah H, Doria A.

Diabetes. 2019 Aug;68(8):1649-1662. doi: 10.2337/db19-0109. Epub 2019 May 24.


Shared Cortex-Cerebellum Dynamics in the Execution and Learning of a Motor Task.

Wagner MJ, Kim TH, Kadmon J, Nguyen ND, Ganguli S, Schnitzer MJ, Luo L.

Cell. 2019 Apr 18;177(3):669-682.e24. doi: 10.1016/j.cell.2019.02.019. Epub 2019 Mar 28.


Identifying individual risk rare variants using protein structure guided local tests (POINT).

Marceau West R, Lu W, Rotroff DM, Kuenemann MA, Chang SM, Wu MC, Wagner MJ, Buse JB, Motsinger-Reif AA, Fourches D, Tzeng JY.

PLoS Comput Biol. 2019 Feb 19;15(2):e1006722. doi: 10.1371/journal.pcbi.1006722. eCollection 2019 Feb.


The Council of Emergency Medicine Residency Directors Academy for Scholarship Coaching Program: Addressing the Needs of Academic Emergency Medicine Educators.

Jordan J, Dorfsman ML, Wagner MJ, Wolf SJ.

West J Emerg Med. 2019 Jan;20(1):105-110. doi: 10.5811/westjem.2018.9.39416. Epub 2018 Nov 13.


Describing ionising radiation risk in the clinical setting: A systematic review.

Younger CWE, Wagner MJ, Douglas C, Warren-Forward H.

Radiography (Lond). 2019 Feb;25(1):83-90. doi: 10.1016/j.radi.2018.11.002. Epub 2018 Nov 29.


Genetic Tools for Coronary Risk Assessment in Type 2 Diabetes: A Cohort Study From the ACCORD Clinical Trial.

Morieri ML, Gao H, Pigeyre M, Shah HS, Sjaarda J, Mendonca C, Hastings T, Buranasupkajorn P, Motsinger-Reif AA, Rotroff DM, Sigal RJ, Marcovina SM, Kraft P, Buse JB, Wagner MJ, Gerstein HC, Mychaleckyj JC, Parè G, Doria A.

Diabetes Care. 2018 Nov;41(11):2404-2413. doi: 10.2337/dc18-0709. Epub 2018 Sep 27.


Response to PD1 inhibition in conventional chondrosarcoma.

Wagner MJ, Ricciotti RW, Mantilla J, Loggers ET, Pollack SM, Cranmer LD.

J Immunother Cancer. 2018 Sep 25;6(1):94. doi: 10.1186/s40425-018-0413-z.


Propranolol for the treatment of vascular sarcomas.

Wagner MJ, Cranmer LD, Loggers ET, Pollack SM.

J Exp Pharmacol. 2018 Sep 6;10:51-58. doi: 10.2147/JEP.S146211. eCollection 2018. Review.


How to Make It Real: Disparities of Care Experiential Learning Workshop.

Figg B, Thompson M, Sewell P, Wagner MJ.

J Grad Med Educ. 2018 Jun;10(3):349-350. doi: 10.4300/JGME-D-17-00826.1. No abstract available.


Genetic Variants in CPA6 and PRPF31 Are Associated With Variation in Response to Metformin in Individuals With Type 2 Diabetes.

Rotroff DM, Yee SW, Zhou K, Marvel SW, Shah HS, Jack JR, Havener TM, Hedderson MM, Kubo M, Herman MA, Gao H, Mychaleckyi JC, McLeod HL, Doria A, Giacomini KM, Pearson ER, Wagner MJ, Buse JB, Motsinger-Reif AA; MetGen Investigators; ACCORD/ACCORDion Investigators.

Diabetes. 2018 Jul;67(7):1428-1440. doi: 10.2337/db17-1164. Epub 2018 Apr 12.


Low affinity uniporter carrier proteins can increase net substrate uptake rate by reducing efflux.

Bosdriesz E, Wortel MT, Haanstra JR, Wagner MJ, de la Torre Cortés P, Teusink B.

Sci Rep. 2018 Apr 3;8(1):5576. doi: 10.1038/s41598-018-23528-7.


Macrophage depletion through colony stimulating factor 1 receptor pathway blockade overcomes adaptive resistance to anti-VEGF therapy.

Lyons YA, Pradeep S, Wu SY, Haemmerle M, Hansen JM, Wagner MJ, Villar-Prados A, Nagaraja AS, Dood RL, Previs RA, Hu W, Zhao Y, Mak DH, Xiao Z, Melendez BD, Lizee GA, Mercado-Uribe I, Baggerly KA, Hwu P, Liu J, Overwijk WW, Coleman RL, Sood AK.

Oncotarget. 2017 Aug 24;8(57):96496-96505. doi: 10.18632/oncotarget.20410. eCollection 2017 Nov 14.


Pharmacogenetic Analysis of the Model-Based Pharmacokinetics of Five Anti-HIV Drugs: How Does This Influence the Effect of Aging?

Chen J, Akhtari FS, Wagner MJ, Suzuki O, Wiltshire T, Motsinger-Reif AA, Dumond JB.

Clin Transl Sci. 2018 Mar;11(2):226-236. doi: 10.1111/cts.12525. Epub 2017 Dec 3.


Cognitive Signaling in Cerebellar Granule Cells.

Wagner MJ.

Neuropsychopharmacology. 2018 Jan;43(1):222-223. doi: 10.1038/npp.2017.186. No abstract available.


Modulation of GLP-1 Levels by a Genetic Variant That Regulates the Cardiovascular Effects of Intensive Glycemic Control in ACCORD.

Shah HS, Morieri ML, Marcovina SM, Sigal RJ, Gerstein HC, Wagner MJ, Motsinger-Reif AA, Buse JB, Kraft P, Mychaleckyj JC, Doria A.

Diabetes Care. 2018 Feb;41(2):348-355. doi: 10.2337/dc17-1638. Epub 2017 Nov 28.


Treatment patterns, efficacy and toxicity of regorafenib in gastrointestinal stromal tumour patients.

Schvartsman G, Wagner MJ, Amini B, Zobniw CM, Trinh VA, Barbo AG, Lin HY, Wang WL, Conley AP, Ravi V, Araujo DM, Zarzour MA, Benjamin RS, Patel S, Somaiah N.

Sci Rep. 2017 Aug 25;7(1):9519. doi: 10.1038/s41598-017-09132-1.


Graphitic Carbon Nitride Supported Ultrafine Pd and Pd-Cu Catalysts: Enhanced Reactivity, Selectivity, and Longevity for Nitrite and Nitrate Hydrogenation.

Ye T, Durkin DP, Banek NA, Wagner MJ, Shuai D.

ACS Appl Mater Interfaces. 2017 Aug 23;9(33):27421-27426. doi: 10.1021/acsami.7b09192. Epub 2017 Aug 14.


Transient Melting and Recrystallization of Semiconductor Nanocrystals Under Multiple Electron-Hole Pair Excitation.

Kirschner MS, Hannah DC, Diroll BT, Zhang X, Wagner MJ, Hayes D, Chang AY, Rowland CE, Lethiec CM, Schatz GC, Chen LX, Schaller RD.

Nano Lett. 2017 Sep 13;17(9):5314-5320. doi: 10.1021/acs.nanolett.7b01705. Epub 2017 Aug 7.


Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.

Rotroff DM, Pijut SS, Marvel SW, Jack JR, Havener TM, Pujol A, Schluter A, Graf GA, Ginsberg HN, Shah HS, Gao H, Morieri ML, Doria A, Mychaleckyi JC, McLeod HL, Buse JB, Wagner MJ, Motsinger-Reif AA; ACCORD/ACCORDion Investigators.

Clin Pharmacol Ther. 2018 Apr;103(4):712-721. doi: 10.1002/cpt.798. Epub 2017 Nov 3.


Risk assessment in solitary fibrous tumors: validation and refinement of a risk stratification model.

Demicco EG, Wagner MJ, Maki RG, Gupta V, Iofin I, Lazar AJ, Wang WL.

Mod Pathol. 2017 Oct;30(10):1433-1442. doi: 10.1038/modpathol.2017.54. Epub 2017 Jul 21.


Vincristine, Ifosfamide, and Doxorubicin for Initial Treatment of Ewing Sarcoma in Adults.

Wagner MJ, Gopalakrishnan V, Ravi V, Livingston JA, Conley AP, Araujo D, Somaiah N, Zarzour MA, Ratan R, Wang WL, Patel SR, Lazar A, Ludwig JA, Benjamin RS.

Oncologist. 2017 Oct;22(10):1271-1277. doi: 10.1634/theoncologist.2016-0464. Epub 2017 Jul 14.


Synovial Sarcoma of the Head and Neck: A Single Institution Review.

Gopalakrishnan V, Amini B, Wagner MJ, Nowell EN, Lazar AJ, Lin PP, Benjamin RS, Araujo DM.

Sarcoma. 2017;2017:2016752. doi: 10.1155/2017/2016752. Epub 2017 Jun 5.


Common and rare genetic markers of lipid variation in subjects with type 2 diabetes from the ACCORD clinical trial.

Marvel SW, Rotroff DM, Wagner MJ, Buse JB, Havener TM, McLeod HL, Motsinger-Reif AA; The ACCORD/ACCORDion Investigators.

PeerJ. 2017 May 2;5:e3187. doi: 10.7717/peerj.3187. eCollection 2017.


Endothelial cell malignancies: new insights from the laboratory and clinic.

Wagner MJ, Ravi V, Menter DG, Sood AK.

NPJ Precis Oncol. 2017 Apr 20;1(1):11. doi: 10.1038/s41698-017-0013-2. eCollection 2017.


Role of YAP1 as a Marker of Sensitivity to Dual AKT and P70S6K Inhibition in Ovarian and Uterine Malignancies.

Previs RA, Armaiz-Pena GN, Ivan C, Dalton HJ, Rupaimoole R, Hansen JM, Lyons Y, Huang J, Haemmerle M, Wagner MJ, Gharpure KM, Nagaraja AS, Filant J, McGuire MH, Noh K, Dorniak PL, Linesch SL, Mangala LS, Pradeep S, Wu SY, Sood AK.

J Natl Cancer Inst. 2017 Jul 1;109(7). doi: 10.1093/jnci/djw296.


Cerebellar granule cells encode the expectation of reward.

Wagner MJ, Kim TH, Savall J, Schnitzer MJ, Luo L.

Nature. 2017 Apr 6;544(7648):96-100. doi: 10.1038/nature21726. Epub 2017 Mar 20.


Preclinical Mammalian Safety Studies of EPHARNA (DOPC Nanoliposomal EphA2-Targeted siRNA).

Wagner MJ, Mitra R, McArthur MJ, Baze W, Barnhart K, Wu SY, Rodriguez-Aguayo C, Zhang X, Coleman RL, Lopez-Berestein G, Sood AK.

Mol Cancer Ther. 2017 Jun;16(6):1114-1123. doi: 10.1158/1535-7163.MCT-16-0541. Epub 2017 Mar 6.


Synthesis and spectral characterization of 2,2-diphenylethyl glucosinolate and HPLC-based reaction progress curve data for the enzymatic hydrolysis of glucosinolates by Sinapis alba myrosinase.

Klingaman CA, Wagner MJ, Brown JR, Klecker JB, Pauley EH, Noldner CJ, Mays JR.

Data Brief. 2016 Nov 28;10:151-181. eCollection 2017 Feb.


Visible-Light-Responsive Graphitic Carbon Nitride: Rational Design and Photocatalytic Applications for Water Treatment.

Zheng Q, Durkin DP, Elenewski JE, Sun Y, Banek NA, Hua L, Chen H, Wagner MJ, Zhang W, Shuai D.

Environ Sci Technol. 2016 Dec 6;50(23):12938-12948. Epub 2016 Nov 17.


Reciprocal stabilization of ABL and TAZ regulates osteoblastogenesis through transcription factor RUNX2.

Matsumoto Y, La Rose J, Kent OA, Wagner MJ, Narimatsu M, Levy AD, Omar MH, Tong J, Krieger JR, Riggs E, Storozhuk Y, Pasquale J, Ventura M, Yeganeh B, Post M, Moran MF, Grynpas MD, Wrana JL, Superti-Furga G, Koleske AJ, Pendergast AM, Rottapel R.

J Clin Invest. 2016 Dec 1;126(12):4482-4496. doi: 10.1172/JCI87802. Epub 2016 Oct 31.


HPLC-based kinetics assay facilitates analysis of systems with multiple reaction products and thermal enzyme denaturation.

Klingaman CA, Wagner MJ, Brown JR, Klecker JB, Pauley EH, Noldner CJ, Mays JR.

Anal Biochem. 2017 Jan 1;516:37-47. doi: 10.1016/j.ab.2016.10.010. Epub 2016 Oct 11.


Incorporating Concomitant Medications into Genome-Wide Analyses for the Study of Complex Disease and Drug Response.

Graham HT, Rotroff DM, Marvel SW, Buse JB, Havener TM, Wilson AG, Wagner MJ, Motsinger-Reif AA; ACCORD/ACCORDion Investigators.

Front Genet. 2016 Aug 17;7:138. eCollection 2016.


Evaluation of Novel Targeted Therapies in Aggressive Biology Sarcoma Patients after progression from US FDA approved Therapies.

Subbiah V, Hess KR, Khawaja MR, Wagner MJ, Tang C, Naing A, Fu S, Janku F, Piha-Paul S, Tsimberidou AM, Herzog CE, Ludwig JA, Patel S, Ravi V, Benjamin RS, Meric-Bernstam F, Hong DS.

Sci Rep. 2016 Oct 17;6:35448. doi: 10.1038/srep35448.


Antitumor and Antiangiogenic Effects of Aspirin-PC in Ovarian Cancer.

Huang Y, Lichtenberger LM, Taylor M, Bottsford-Miller JN, Haemmerle M, Wagner MJ, Lyons Y, Pradeep S, Hu W, Previs RA, Hansen JM, Fang D, Dorniak PL, Filant J, Dial EJ, Shen F, Hatakeyama H, Sood AK.

Mol Cancer Ther. 2016 Dec;15(12):2894-2904. Epub 2016 Sep 16.


Genetic Predictors of Cardiovascular Mortality During Intensive Glycemic Control in Type 2 Diabetes: Findings From the ACCORD Clinical Trial.

Shah HS, Gao H, Morieri ML, Skupien J, Marvel S, Paré G, Mannino GC, Buranasupkajorn P, Mendonca C, Hastings T, Marcovina SM, Sigal RJ, Gerstein HC, Wagner MJ, Motsinger-Reif AA, Buse JB, Kraft P, Mychaleckyj JC, Doria A.

Diabetes Care. 2016 Nov;39(11):1915-1924. Epub 2016 Aug 15.


Variation in the glucose transporter gene SLC2A2 is associated with glycemic response to metformin.

Zhou K, Yee SW, Seiser EL, van Leeuwen N, Tavendale R, Bennett AJ, Groves CJ, Coleman RL, van der Heijden AA, Beulens JW, de Keyser CE, Zaharenko L, Rotroff DM, Out M, Jablonski KA, Chen L, Javorský M, Židzik J, Levin AM, Williams LK, Dujic T, Semiz S, Kubo M, Chien HC, Maeda S, Witte JS, Wu L, Tkáč I, Kooy A, van Schaik RHN, Stehouwer CDA, Logie L; MetGen Investigators; DPP Investigators; ACCORD Investigators, Sutherland C, Klovins J, Pirags V, Hofman A, Stricker BH, Motsinger-Reif AA, Wagner MJ, Innocenti F, 't Hart LM, Holman RR, McCarthy MI, Hedderson MM, Palmer CNA, Florez JC, Giacomini KM, Pearson ER.

Nat Genet. 2016 Sep;48(9):1055-1059. doi: 10.1038/ng.3632. Epub 2016 Aug 8.


Enhancement of Nitrite Reduction Kinetics on Electrospun Pd-Carbon Nanomaterial Catalysts for Water Purification.

Ye T, Durkin DP, Hu M, Wang X, Banek NA, Wagner MJ, Shuai D.

ACS Appl Mater Interfaces. 2016 Jul 20;8(28):17739-44. doi: 10.1021/acsami.6b03635. Epub 2016 Jul 11.


An Unusual Case of Central Retinal Vein Occlusion and Review of the Toxicity Profile of Regorafenib in GIST Patients.

Schvartsman G, Wagner MJ, Zobniw CM, Trinh VA, Patel S, Somaiah N.

Curr Oncol Rep. 2016 Aug;18(8):49. doi: 10.1007/s11912-016-0536-7. Review.


A genome-wide study of lipid response to fenofibrate in Caucasians: a combined analysis of the GOLDN and ACCORD studies.

Irvin MR, Rotroff DM, Aslibekyan S, Zhi D, Hidalgo B, Motsinger-Reif A, Marvel S, Srinivasasainagendra V, Claas SA, Buse JB, Straka RJ, Ordovas JM, Borecki IB, Guo X, Chen IY, Rotter JI, Wagner MJ, Arnett DK.

Pharmacogenet Genomics. 2016 Jul;26(7):324-33. doi: 10.1097/FPC.0000000000000219.


Chemotherapy for Bone Sarcoma in Adults.

Wagner MJ, Livingston JA, Patel SR, Benjamin RS.

J Oncol Pract. 2016 Mar;12(3):208-16. doi: 10.1200/JOP.2015.009944. Review.


Protein-based ferrogels.

Mody P, Hart C, Romano S, El-Magbri M, Esson MM, Ibeh T, Knowlton ED, Zhang M, Wagner MJ, Hartings MR.

J Inorg Biochem. 2016 Jun;159:7-13. doi: 10.1016/j.jinorgbio.2016.02.015. Epub 2016 Feb 12.


Personalized comprehensive molecular profiling of high risk osteosarcoma: Implications and limitations for precision medicine.

Subbiah V, Wagner MJ, McGuire MF, Sarwari NM, Devarajan E, Lewis VO, Westin S, Kato S, Brown RE, Anderson P.

Oncotarget. 2015 Dec 1;6(38):40642-54. doi: 10.18632/oncotarget.5841.


Chemotherapy for bone sarcomas in adults: the MD anderson experience.

Benjamin RS, Wagner MJ, Livingston JA, Ravi V, Patel SR.

Am Soc Clin Oncol Educ Book. 2015:e656-60. doi: 10.14694/EdBook_AM.2015.35.e656. Review.


A retrospective chart review of drug treatment patterns and clinical outcomes among patients with metastatic or recurrent soft tissue sarcoma refractory to one or more prior chemotherapy treatments.

Wagner MJ, Amodu LI, Duh MS, Korves C, Solleza F, Manson SC, Diaz J, Neary MP, Demetri GD.

BMC Cancer. 2015 Mar 25;15:175. doi: 10.1186/s12885-015-1182-4.


Comparative effectiveness of infraclavicular and supraclavicular perineural catheters for ultrasound-guided through-the-catheter bolus anesthesia.

Harrison TK, Kim TE, Howard SK, Funck N, Wagner MJ, Walters TL, Curtin C, Chang J, Ganaway T, Mariano ER.

J Ultrasound Med. 2015 Feb;34(2):333-40. doi: 10.7863/ultra.34.2.333.


Not another boring lecture: engaging learners with active learning techniques.

Wolff M, Wagner MJ, Poznanski S, Schiller J, Santen S.

J Emerg Med. 2015 Jan;48(1):85-93. doi: 10.1016/j.jemermed.2014.09.010. Epub 2014 Oct 13. Review.


Physical justification for negative remanent magnetization in homogeneous nanoparticles.

Gu S, He W, Zhang M, Zhuang T, Jin Y, ElBidweihy H, Mao Y, Dickerson JH, Wagner MJ, Della Torre E, Bennett LH.

Sci Rep. 2014 Sep 3;4:6267. doi: 10.1038/srep06267.


A randomized comparison of proximal and distal ultrasound-guided adductor canal catheter insertion sites for knee arthroplasty.

Mariano ER, Kim TE, Wagner MJ, Funck N, Harrison TK, Walters T, Giori N, Woolson S, Ganaway T, Howard SK.

J Ultrasound Med. 2014 Sep;33(9):1653-62. doi: 10.7863/ultra.33.9.1653.


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