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Items: 1 to 50 of 230

1.

(5'R)-and (5'S)-purine 5',8-cyclo-2'-deoxyribonucleosides: reality or artifactual measurements? A reply to Chatgilialoglu's comments (this issue).

Cadet J, Di Mascio P, Wagner JR.

Free Radic Res. 2019 Oct;53(9-10):1014-1018. doi: 10.1080/10715762.2019.1667992. Epub 2019 Sep 25.

PMID:
31514561
2.

Microbiological and Sensory Characteristics of Mould-Ripened Salami under Different Packaging Conditions.

Canel RS, Guerrissi S, Sanchez M, Mónaco G, Laich F, Wagner JR, Renaud V, Ludemann V.

Food Technol Biotechnol. 2019 Mar;57(1):87-96. doi: 10.17113/ftb.57.01.19.5803.

3.

Continuous Evaluation of Ligand Protein Predictions: A Weekly Community Challenge for Drug Docking.

Wagner JR, Churas CP, Liu S, Swift RV, Chiu M, Shao C, Feher VA, Burley SK, Gilson MK, Amaro RE.

Structure. 2019 Aug 6;27(8):1326-1335.e4. doi: 10.1016/j.str.2019.05.012. Epub 2019 Jun 27.

PMID:
31257108
4.

Strand Breaks Induced by Very Low Energy Electrons: Product Analysis and Mechanistic Insight into the Reaction with TpT.

Khorsandgolchin G, Sanche L, Cloutier P, Wagner JR.

J Am Chem Soc. 2019 Jul 3;141(26):10315-10323. doi: 10.1021/jacs.9b03295. Epub 2019 Jun 22.

PMID:
31244176
5.

Dehydroascorbic acid S-Thiolation of peptides and proteins: Role of homocysteine and glutathione.

Ahuié Kouakou G, Gagnon H, Lacasse V, Wagner JR, Naylor S, Klarskov K.

Free Radic Biol Med. 2019 Sep;141:233-243. doi: 10.1016/j.freeradbiomed.2019.06.022. Epub 2019 Jun 19.

PMID:
31228548
6.

DNA Base Modifications Mediated by Femtosecond Laser-Induced Cold Low-Density Plasma in Aqueous Solutions.

Belmouaddine H, Madugundu GS, Wagner JR, Couairon A, Houde D, Sanche L.

J Phys Chem Lett. 2019 Jun 6;10(11):2753-2760. doi: 10.1021/acs.jpclett.9b00652. Epub 2019 May 13.

PMID:
31039309
7.

Radiation-induced (5'R)-and (5'S)-purine 5',8-cyclo-2'-deoxyribonucleosides in human cells: a revisited analysis of HPLC-MS/MS measurements.

Cadet J, Di Mascio P, Wagner JR.

Free Radic Res. 2019 May;53(5):574-577. doi: 10.1080/10715762.2019.1605169. Epub 2019 May 7. No abstract available.

PMID:
30961398
8.

Pulsatile Hematuria From Procurement Core Needle Biopsy: A Case Report.

Kwon YK, Cheema FA, Wagner JR, Gordon R, Sheiner PA, Maneckshana BT, Rochon C.

Transplant Proc. 2018 Dec;50(10):3957-3960. doi: 10.1016/j.transproceed.2018.07.001. Epub 2018 Jul 7.

PMID:
30577295
9.

Biphotonic Ionization of DNA: From Model Studies to Cell.

Cadet J, Wagner JR, Angelov D.

Photochem Photobiol. 2019 Jan;95(1):59-72. doi: 10.1111/php.13042. Epub 2018 Nov 28. Review.

PMID:
30380156
10.

Determinants of Oligonucleotide Selectivity of APOBEC3B.

Wagner JR, Demir Ö, Carpenter MA, Aihara H, Harki DA, Harris RS, Amaro RE.

J Chem Inf Model. 2019 May 28;59(5):2264-2273. doi: 10.1021/acs.jcim.8b00427. Epub 2018 Sep 10.

PMID:
30130104
11.

Emulsification Increases the Acute Ketogenic Effect and Bioavailability of Medium-Chain Triglycerides in Humans: Protein, Carbohydrate, and Fat Metabolism.

Courchesne-Loyer A, Lowry CM, St-Pierre V, Vandenberghe C, Fortier M, Castellano CA, Wagner JR, Cunnane SC.

Curr Dev Nutr. 2017 Jun 21;1(7):e000851. doi: 10.3945/cdn.117.000851. eCollection 2017 Jul.

12.

UNG-1 and APN-1 are the major enzymes to efficiently repair 5-hydroxymethyluracil DNA lesions in C. elegans.

Papaluca A, Wagner JR, Saragovi HU, Ramotar D.

Sci Rep. 2018 May 1;8(1):6860. doi: 10.1038/s41598-018-25124-1.

13.

Evaluation of Stem Cell Therapies in a Bilateral Patellar Tendon Injury Model in Rats.

Wagner JR, Taguchi T, Cho JY, Charavaryamath C, Griffon DJ.

J Vis Exp. 2018 Mar 30;(133). doi: 10.3791/56810.

PMID:
29658926
14.

National Comprehensive Cancer Network® Favorable Intermediate Risk Prostate Cancer-Is Active Surveillance Appropriate?

Aghazadeh MA, Frankel J, Belanger M, McLaughlin T, Tortora J, Staff I, Wagner JR.

J Urol. 2018 May;199(5):1196-1201. doi: 10.1016/j.juro.2017.12.049. Epub 2017 Dec 26.

PMID:
29288120
15.

Absolute vibrational excitation cross sections for 1-18 eV electron scattering from condensed dimethyl phosphate (DMP).

Lemelin V, Bass AD, Wagner JR, Sanche L.

J Chem Phys. 2017 Dec 21;147(23):234305. doi: 10.1063/1.5008486.

PMID:
29272920
16.

Postmortem Fluid and Tissue Concentrations of THC, 11-OH-THC and THC-COOH.

Saenz SR, Lewis RJ, Angier MK, Wagner JR.

J Anal Toxicol. 2017 Jul 1;41(6):508-516. doi: 10.1093/jat/bkx033.

PMID:
28830124
17.

POVME 3.0: Software for Mapping Binding Pocket Flexibility.

Wagner JR, Sørensen J, Hensley N, Wong C, Zhu C, Perison T, Amaro RE.

J Chem Theory Comput. 2017 Sep 12;13(9):4584-4592. doi: 10.1021/acs.jctc.7b00500. Epub 2017 Aug 30.

18.

Evaluation of Oral Fluid as a Specimen for DUID.

Veitenheimer AM, Wagner JR.

J Anal Toxicol. 2017 Jul 1;41(6):517-522. doi: 10.1093/jat/bkx036.

PMID:
28633318
19.

Effect of salt content and type on emulsifying properties of hull soy soluble polysaccharides at acidic pH.

Cabezas DM, Ortiz MP, Wagner JR, Porfiri MC.

Food Res Int. 2017 Jul;97:62-70. doi: 10.1016/j.foodres.2017.03.031. Epub 2017 Mar 22.

PMID:
28578065
20.

In Reply: Factors Predicting Recurrence After Resection of Clival Chordoma Using Variable Surgical Approaches and Radiation Modalities.

Jahangiri A, Chin AT, Wagner JR, Kunwar S, Ames C, Chou D, Barani I, Parsa AT, McDermott MW, Benet A, El-Sayed IH, Aghi MK.

Neurosurgery. 2017 Aug 1;81(2):E32. doi: 10.1093/neuros/nyx137. No abstract available.

PMID:
28379552
21.

Macrophage migration inhibitory factor downregulation: a novel mechanism of resistance to anti-angiogenic therapy.

Castro BA, Flanigan P, Jahangiri A, Hoffman D, Chen W, Kuang R, De Lay M, Yagnik G, Wagner JR, Mascharak S, Sidorov M, Shrivastav S, Kohanbash G, Okada H, Aghi MK.

Oncogene. 2017 Jun 29;36(26):3749-3759. doi: 10.1038/onc.2017.1. Epub 2017 Feb 20.

22.

Role of a p53 polymorphism in the development of nonfunctional pituitary adenomas.

Yagnik G, Jahangiri A, Chen R, Wagner JR, Aghi MK.

Mol Cell Endocrinol. 2017 May 5;446:81-90. doi: 10.1016/j.mce.2017.02.017. Epub 2017 Feb 16.

23.

GLUT3 upregulation promotes metabolic reprogramming associated with antiangiogenic therapy resistance.

Kuang R, Jahangiri A, Mascharak S, Nguyen A, Chandra A, Flanigan PM, Yagnik G, Wagner JR, De Lay M, Carrera D, Castro BA, Hayes J, Sidorov M, Garcia JLI, Eriksson P, Ronen S, Phillips J, Molinaro A, Koliwad S, Aghi MK.

JCI Insight. 2017 Jan 26;2(2):e88815. doi: 10.1172/jci.insight.88815.

24.

Reporter gene imaging of targeted T cell immunotherapy in recurrent glioma.

Keu KV, Witney TH, Yaghoubi S, Rosenberg J, Kurien A, Magnusson R, Williams J, Habte F, Wagner JR, Forman S, Brown C, Allen-Auerbach M, Czernin J, Tang W, Jensen MC, Badie B, Gambhir SS.

Sci Transl Med. 2017 Jan 18;9(373). pii: eaag2196. doi: 10.1126/scitranslmed.aag2196.

25.

Mechanisms of Mas1 Receptor-Mediated Signaling in the Vascular Endothelium.

Hoffmann BR, Stodola TJ, Wagner JR, Didier DN, Exner EC, Lombard JH, Greene AS.

Arterioscler Thromb Vasc Biol. 2017 Mar;37(3):433-445. doi: 10.1161/ATVBAHA.116.307787. Epub 2017 Jan 12.

26.

Formation and repair of oxidatively generated damage in cellular DNA.

Cadet J, Davies KJA, Medeiros MH, Di Mascio P, Wagner JR.

Free Radic Biol Med. 2017 Jun;107:13-34. doi: 10.1016/j.freeradbiomed.2016.12.049. Epub 2017 Jan 2. Review.

27.

Regression of Glioblastoma after Chimeric Antigen Receptor T-Cell Therapy.

Brown CE, Alizadeh D, Starr R, Weng L, Wagner JR, Naranjo A, Ostberg JR, Blanchard MS, Kilpatrick J, Simpson J, Kurien A, Priceman SJ, Wang X, Harshbarger TL, D'Apuzzo M, Ressler JA, Jensen MC, Barish ME, Chen M, Portnow J, Forman SJ, Badie B.

N Engl J Med. 2016 Dec 29;375(26):2561-9. doi: 10.1056/NEJMoa1610497.

28.

Base Release and Modification in Solid-Phase DNA Exposed to Low-Energy Electrons.

Choofong S, Cloutier P, Sanche L, Wagner JR.

Radiat Res. 2016 Nov;186(5):520-530. Epub 2016 Nov 1.

PMID:
27802110
29.

Effect of Xanthan Gum on the Rheological Behavior and Microstructure of Sodium Caseinate Acid Gels.

Hidalgo ME, Armendariz M, Wagner JR, Risso PH.

Gels. 2016 Sep 10;2(3). pii: E23. doi: 10.3390/gels2030023.

30.

Decipher correlation patterns post prostatectomy: initial experience from 2 342 prospective patients.

Den RB, Santiago-Jimenez M, Alter J, Schliekelman M, Wagner JR, Renzulli Ii JF, Lee DI, Brito CG, Monahan K, Gburek B, Kella N, Vallabhan G, Abdollah F, Trabulsi EJ, Lallas CD, Gomella LG, Woodlief TL, Haddad Z, Lam LL, Deheshi S, Wang Q, Choeurng V, du Plessis M, Jordan J, Parks B, Shin H, Buerki C, Yousefi K, Davicioni E, Patel VR, Shah NL.

Prostate Cancer Prostatic Dis. 2016 Dec;19(4):374-379. doi: 10.1038/pcan.2016.38. Epub 2016 Aug 30.

31.

Dynamic Interplay between the Transcriptome and Methylome in Response to Oxidative and Alkylating Stress.

Deferme L, Wolters JE, Claessen SM, Theunissen DH, van den Beucken T, Wagner JR, van Breda SG, Kleinjans JC, Briedé JJ.

Chem Res Toxicol. 2016 Sep 19;29(9):1428-38. doi: 10.1021/acs.chemrestox.6b00090. Epub 2016 Aug 24.

PMID:
27509014
32.

Effects of Hypoxia and Chitosan on Equine Umbilical Cord-Derived Mesenchymal Stem Cells.

Griffon DJ, Cho J, Wagner JR, Charavaryamath C, Wei J, Wagoner Johnson A.

Stem Cells Int. 2016;2016:2987140. doi: 10.1155/2016/2987140. Epub 2016 Jun 9.

33.

Comparative study of emulsifying properties in acidic condition of soluble polysaccharides fractions obtained from soy hull and defatted soy flour.

Porfiri MC, Cabezas DM, Wagner JR.

J Food Sci Technol. 2016 Feb;53(2):956-967. doi: 10.1007/s13197-015-2149-9. Epub 2016 Feb 3.

34.

Phase 1 studies of central memory-derived CD19 CAR T-cell therapy following autologous HSCT in patients with B-cell NHL.

Wang X, Popplewell LL, Wagner JR, Naranjo A, Blanchard MS, Mott MR, Norris AP, Wong CW, Urak RZ, Chang WC, Khaled SK, Siddiqi T, Budde LE, Xu J, Chang B, Gidwaney N, Thomas SH, Cooper LJ, Riddell SR, Brown CE, Jensen MC, Forman SJ.

Blood. 2016 Jun 16;127(24):2980-90. doi: 10.1182/blood-2015-12-686725. Epub 2016 Apr 26.

35.

Author Reply.

Jackson MA, Bellas N, Siegrist T, Haddock P, Staff I, Laudone V, Wagner JR.

Urology. 2016 May;91:117-8. doi: 10.1016/j.urology.2015.12.078. No abstract available.

PMID:
27107189
36.

Emerging Computational Methods for the Rational Discovery of Allosteric Drugs.

Wagner JR, Lee CT, Durrant JD, Malmstrom RD, Feher VA, Amaro RE.

Chem Rev. 2016 Jun 8;116(11):6370-90. doi: 10.1021/acs.chemrev.5b00631. Epub 2016 Apr 13. Review.

37.

Experienced Open vs Early Robotic-assisted Laparoscopic Radical Prostatectomy: A 10-year Prospective and Retrospective Comparison.

Jackson MA, Bellas N, Siegrist T, Haddock P, Staff I, Laudone V, Wagner JR.

Urology. 2016 May;91:111-8. doi: 10.1016/j.urology.2015.12.072. Epub 2016 Feb 12.

PMID:
26879735
38.

Isomerization of 5-Hydroxy-5-methylhydantoin 2'-Deoxynucleoside into α-Furanose, β-Furanose, α-Pyranose, and β-Pyranose Anomers.

Ali A, Wagner JR.

Chem Res Toxicol. 2016 Jan 19;29(1):65-74. doi: 10.1021/acs.chemrestox.5b00406. Epub 2015 Dec 17.

PMID:
26616794
39.

Improved versus worsened endocrine function after transsphenoidal surgery for nonfunctional pituitary adenomas: rate, time course, and radiological analysis.

Jahangiri A, Wagner JR, Han SW, Tran MT, Miller LM, Chen R, Tom MW, Ostling LR, Kunwar S, Blevins L, Aghi MK.

J Neurosurg. 2016 Mar;124(3):589-95. doi: 10.3171/2015.1.JNS141543. Epub 2015 Aug 7.

PMID:
26252454
40.

Urinary Bother as a Predictor of Postsurgical Changes in Urinary Function After Robotic Radical Prostatectomy.

Murphy G, Haddock P, Doak H, Jackson M, Dorin R, Meraney A, Kesler S, Staff I, Wagner JR.

Urology. 2015 Oct;86(4):817-23. doi: 10.1016/j.urology.2015.04.041. Epub 2015 Jul 10.

PMID:
26166672
41.

Radiosensitization of DNA by Cisplatin Adducts Results from an Increase in the Rate Constant for the Reaction with Hydrated Electrons and Formation of Pt(I).

Behmand B, Marignier JL, Mostafavi M, Wagner JR, Hunting DJ, Sanche L.

J Phys Chem B. 2015 Jul 30;119(30):9496-500. doi: 10.1021/acs.jpcb.5b01752. Epub 2015 Jul 9.

42.

Seminal vesicle cyst with ipsilateral renal agenesis and ectopic ureter (Zinner syndrome).

Haddock P, Wagner JR.

Urology. 2015 May;85(5):e41-e42. doi: 10.1016/j.urology.2015.02.015.

PMID:
25917744
43.

Weighted Gleason scores do not outperform standard clinical Gleason scores.

Cusano A, Haddock P, Jackson M, Staff I, Wagner JR.

Can J Urol. 2015 Apr;22(2):7709-14.

PMID:
25891334
44.

Incidence of headache as a presenting complaint in over 1000 patients with sellar lesions and factors predicting postoperative improvement.

Jahangiri A, Wagner JR, Chin AT, Han SW, Tran MT, Miller LM, Tom MW, Chen R, Kunwar S, Blevins L, Aghi MK.

Clin Neurol Neurosurg. 2015 May;132:16-20. doi: 10.1016/j.clineuro.2015.02.006. Epub 2015 Feb 20.

PMID:
25746316
45.

Prostate atypia: does repeat biopsy detect clinically significant prostate cancer?

Dorin RP, Wiener S, Harris CD, Wagner JR.

Prostate. 2015 May;75(7):673-8. doi: 10.1002/pros.22950. Epub 2015 Jan 16.

PMID:
25597982
46.

Factors predicting recurrence after resection of clival chordoma using variable surgical approaches and radiation modalities.

Jahangiri A, Chin AT, Wagner JR, Kunwar S, Ames C, Chou D, Barani I, Parsa AT, McDermott MW, Benet A, El-Sayed IH, Aghi MK.

Neurosurgery. 2015 Feb;76(2):179-85; discussion 185-6. doi: 10.1227/NEU.0000000000000611.

PMID:
25594191
47.

Determination of hydration properties and thermal behavior of Paecilomyces variotii by differential scanning calorimetry.

Canel RS, Ludemann V, De La Osa O, Wagner JR.

Prikl Biokhim Mikrobiol. 2013 Nov-Dec;49(6):600-5.

PMID:
25434184
48.

GneimoSim: a modular internal coordinates molecular dynamics simulation package.

Larsen AB, Wagner JR, Kandel S, Salomon-Ferrer R, Vaidehi N, Jain A.

J Comput Chem. 2014 Dec 5;35(31):2245-55. doi: 10.1002/jcc.23743. Epub 2014 Sep 27.

49.

Impact of active surveillance on pathology and nerve sparing status.

Sussman R, Staff I, Tortora J, Champagne A, Meraney A, Kesler SS, Wagner JR.

Can J Urol. 2014 Jun;21(3):7299-304.

PMID:
24978361
50.

Hydroxyl-radical-induced oxidation of 5-methylcytosine in isolated and cellular DNA.

Madugundu GS, Cadet J, Wagner JR.

Nucleic Acids Res. 2014 Jun;42(11):7450-60. doi: 10.1093/nar/gku334. Epub 2014 May 22.

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