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Items: 1 to 50 of 192

1.

The first decades of developmental evolution and the Journal of Experimental Zoology.

Wagner GP.

J Exp Zool B Mol Dev Evol. 2018 Dec;330(8):395. doi: 10.1002/jez.b.22839. Epub 2018 Dec 19. No abstract available.

PMID:
30569657
2.

Decidualization of Human Endometrial Stromal Fibroblasts is a Multiphasic Process Involving Distinct Transcriptional Programs.

Rytkönen KT, Erkenbrack EM, Poutanen M, Elo LL, Pavlicev M, Wagner GP.

Reprod Sci. 2019 Mar;26(3):323-336. doi: 10.1177/1933719118802056. Epub 2018 Oct 11.

PMID:
30309298
3.

The mammalian decidual cell evolved from a cellular stress response.

Erkenbrack EM, Maziarz JD, Griffith OW, Liang C, Chavan AR, Nnamani MC, Wagner GP.

PLoS Biol. 2018 Aug 24;16(8):e2005594. doi: 10.1371/journal.pbio.2005594. eCollection 2018 Aug.

4.

Are there general laws for digit evolution in squamates? The loss and re-evolution of digits in a clade of fossorial lizards (Brachymeles, Scincinae).

Wagner GP, Griffith OW, Bergmann PJ, Bello-Hellegouarch G, Kohlsdorf T, Bhullar A, Siler CD.

J Morphol. 2018 Aug;279(8):1104-1119. doi: 10.1002/jmor.20834. Epub 2018 Jun 8.

PMID:
29884998
5.

The evolution of empathy and devo-evo-What is the connection?

Wagner GP.

J Exp Zool B Mol Dev Evol. 2018 Mar;330(2):65. doi: 10.1002/jez.b.22801. Epub 2018 Apr 6. No abstract available.

PMID:
29633558
6.

Pervasive Correlated Evolution in Gene Expression Shapes Cell and Tissue Type Transcriptomes.

Liang C, Musser JM, Cloutier A, Prum RO, Wagner GP.

Genome Biol Evol. 2018 Feb 1;10(2):538-552. doi: 10.1093/gbe/evy016.

7.

Reply to Liu: Inflammation before implantation both in evolution and development.

Griffith OW, Chavan AR, Protopapas S, Maziarz J, Romero R, Wagner GP.

Proc Natl Acad Sci U S A. 2018 Jan 2;115(1):E3-E4. doi: 10.1073/pnas.1717001115. Epub 2017 Dec 12. No abstract available.

8.

The power of negative [theoretical] results.

Wagner GP.

Proc Natl Acad Sci U S A. 2017 Dec 5;114(49):12851-12852. doi: 10.1073/pnas.1718862114. Epub 2017 Nov 21. No abstract available.

9.

Perspectives on Integrating Genetic and Physical Explanations of Evolution and Development: An Introduction to the Symposium.

Love AC, Stewart TA, Wagner GP, Newman SA.

Integr Comp Biol. 2017 Dec 1;57(6):1258-1268. doi: 10.1093/icb/icx121.

PMID:
29048547
10.

Genetic Associations with Gestational Duration and Spontaneous Preterm Birth.

Zhang G, Feenstra B, Bacelis J, Liu X, Muglia LM, Juodakis J, Miller DE, Litterman N, Jiang PP, Russell L, Hinds DA, Hu Y, Weirauch MT, Chen X, Chavan AR, Wagner GP, Pavličev M, Nnamani MC, Maziarz J, Karjalainen MK, Rämet M, Sengpiel V, Geller F, Boyd HA, Palotie A, Momany A, Bedell B, Ryckman KK, Huusko JM, Forney CR, Kottyan LC, Hallman M, Teramo K, Nohr EA, Davey Smith G, Melbye M, Jacobsson B, Muglia LJ.

N Engl J Med. 2017 Sep 21;377(12):1156-1167. doi: 10.1056/NEJMoa1612665. Epub 2017 Sep 6.

11.

The core transcriptome of mammalian placentas and the divergence of expression with placental shape.

Armstrong DL, McGowen MR, Weckle A, Pantham P, Caravas J, Agnew D, Benirschke K, Savage-Rumbaugh S, Nevo E, Kim CJ, Wagner GP, Romero R, Wildman DE.

Placenta. 2017 Sep;57:71-78. doi: 10.1016/j.placenta.2017.04.015. Epub 2017 May 12.

12.

The inflammation paradox in the evolution of mammalian pregnancy: turning a foe into a friend.

Chavan AR, Griffith OW, Wagner GP.

Curr Opin Genet Dev. 2017 Dec;47:24-32. doi: 10.1016/j.gde.2017.08.004. Epub 2017 Aug 29. Review.

PMID:
28850905
13.

The placenta as a model for understanding the origin and evolution of vertebrate organs.

Griffith OW, Wagner GP.

Nat Ecol Evol. 2017 Mar 23;1(4):72. doi: 10.1038/s41559-017-0072. Review.

PMID:
28812655
14.

Embryo implantation evolved from an ancestral inflammatory attachment reaction.

Griffith OW, Chavan AR, Protopapas S, Maziarz J, Romero R, Wagner GP.

Proc Natl Acad Sci U S A. 2017 Aug 8;114(32):E6566-E6575. doi: 10.1073/pnas.1701129114. Epub 2017 Jul 26.

15.

Evolution of Gene Expression in the Uterine Cervix related to Steroid Signaling: Conserved features in the regulation of cervical ripening.

Wagner GP, Nnamani MC, Chavan AR, Maziarz J, Protopapas S, Condon J, Romero R.

Sci Rep. 2017 Jun 30;7(1):4439. doi: 10.1038/s41598-017-04759-6.

16.

Origin, Function, and Effects of Female Orgasm: All Three are Different.

Wagner GP, Pavličev M.

J Exp Zool B Mol Dev Evol. 2017 Jun;328(4):299-303. doi: 10.1002/jez.b.22737. Epub 2017 Apr 3. No abstract available.

PMID:
28371416
17.

Single-cell transcriptomics of the human placenta: inferring the cell communication network of the maternal-fetal interface.

Pavličev M, Wagner GP, Chavan AR, Owens K, Maziarz J, Dunn-Fletcher C, Kallapur SG, Muglia L, Jones H.

Genome Res. 2017 Mar;27(3):349-361. doi: 10.1101/gr.207597.116. Epub 2017 Feb 7.

18.

The origin and evolution of cell types.

Arendt D, Musser JM, Baker CVH, Bergman A, Cepko C, Erwin DH, Pavlicev M, Schlosser G, Widder S, Laubichler MD, Wagner GP.

Nat Rev Genet. 2016 Dec;17(12):744-757. doi: 10.1038/nrg.2016.127. Epub 2016 Nov 7. Review.

PMID:
27818507
19.

What the Evolution of Female Orgasm Teaches Us.

Wagner GP, Pavličev M.

J Exp Zool B Mol Dev Evol. 2016 Sep;326(6):325. doi: 10.1002/jez.b.22694. No abstract available.

PMID:
27700007
20.

Cis-Regulatory Evolution of Forkhead Box O1 (FOXO1), a Terminal Selector Gene for Decidual Stromal Cell Identity.

Park Y, Nnamani MC, Maziarz J, Wagner GP.

Mol Biol Evol. 2016 Dec;33(12):3161-3169. Epub 2016 Sep 15.

PMID:
27634871
21.

The Transcriptomic Evolution of Mammalian Pregnancy: Gene Expression Innovations in Endometrial Stromal Fibroblasts.

Kin K, Maziarz J, Chavan AR, Kamat M, Vasudevan S, Birt A, Emera D, Lynch VJ, Ott TL, Pavlicev M, Wagner GP.

Genome Biol Evol. 2016 Aug 25;8(8):2459-73. doi: 10.1093/gbe/evw168.

22.

The fetal-maternal interface of the nine-banded armadillo: endothelial cells of maternal sinus are partially replaced by trophoblast.

Chavan AR, Wagner GP.

Zoological Lett. 2016 Jun 8;2:11. doi: 10.1186/s40851-016-0048-1. eCollection 2016.

23.

A Derived Allosteric Switch Underlies the Evolution of Conditional Cooperativity between HOXA11 and FOXO1.

Nnamani MC, Ganguly S, Erkenbrack EM, Lynch VJ, Mizoue LS, Tong Y, Darling HL, Fuxreiter M, Meiler J, Wagner GP.

Cell Rep. 2016 Jun 7;15(10):2097-2108. doi: 10.1016/j.celrep.2016.04.088. Epub 2016 May 26.

24.

What was the ancestral function of decidual stromal cells? A model for the evolution of eutherian pregnancy.

Chavan AR, Bhullar BA, Wagner GP.

Placenta. 2016 Apr;40:40-51. doi: 10.1016/j.placenta.2016.02.012. Epub 2016 Feb 23. Review.

PMID:
27016782
25.

Hedgehog inhibition causes complete loss of limb outgrowth and transformation of digit identity in Xenopus tropicalis.

Stopper GF, Richards-Hrdlicka KL, Wagner GP.

J Exp Zool B Mol Dev Evol. 2016 Mar;326(2):110-24. doi: 10.1002/jez.b.22669. Epub 2016 Feb 26.

PMID:
26918681
26.

Molecular evolution of HoxA13 and the multiple origins of limbless morphologies in amphibians and reptiles.

Singarete ME, Grizante MB, Milograna SR, Nery MF, Kin K, Wagner GP, Kohlsdorf T.

Genet Mol Biol. 2015 Jul-Sep;38(3):255-62. doi: 10.1590/S1415-475738320150039. Epub 2015 Aug 21.

27.

What is "homology thinking" and what is it for?

Wagner GP.

J Exp Zool B Mol Dev Evol. 2016 Jan;326(1):3-8. doi: 10.1002/jez.b.22656. Epub 2015 Oct 21.

PMID:
26486321
28.

Character trees from transcriptome data: Origin and individuation of morphological characters and the so-called "species signal".

Musser JM, Wagner GP.

J Exp Zool B Mol Dev Evol. 2015 Nov;324(7):588-604. doi: 10.1002/jez.b.22636. Epub 2015 Jul 14. Review.

PMID:
26175303
29.

Nuclear β-catenin localization supports homology of feathers, avian scutate scales, and alligator scales in early development.

Musser JM, Wagner GP, Prum RO.

Evol Dev. 2015 May-Jun;17(3):185-94. doi: 10.1111/ede.12123.

PMID:
25963196
30.

Cell-type phylogenetics and the origin of endometrial stromal cells.

Kin K, Nnamani MC, Lynch VJ, Michaelides E, Wagner GP.

Cell Rep. 2015 Mar 3;10(8):1398-409. doi: 10.1016/j.celrep.2015.01.062. Epub 2015 Feb 26.

31.

Ancient transposable elements transformed the uterine regulatory landscape and transcriptome during the evolution of mammalian pregnancy.

Lynch VJ, Nnamani MC, Kapusta A, Brayer K, Plaza SL, Mazur EC, Emera D, Sheikh SZ, Grützner F, Bauersachs S, Graf A, Young SL, Lieb JD, DeMayo FJ, Feschotte C, Wagner GP.

Cell Rep. 2015 Feb 3;10(4):551-61. doi: 10.1016/j.celrep.2014.12.052. Epub 2015 Jan 29.

32.

The statistical geometry of transcriptome divergence in cell-type evolution and cancer.

Liang C; FANTOM Consortium, Forrest AR, Wagner GP.

Nat Commun. 2015 Jan 14;6:6066. doi: 10.1038/ncomms7066.

PMID:
25585899
33.

Two rules for the detection and quantification of epistasis and other interaction effects.

Wagner GP.

Methods Mol Biol. 2015;1253:145-57. doi: 10.1007/978-1-4939-2155-3_8.

PMID:
25403531
34.

Malignant cancer and invasive placentation: A case for positive pleiotropy between endometrial and malignancy phenotypes.

D'Souza AW, Wagner GP.

Evol Med Public Health. 2014 Oct 15;2014(1):136-45. doi: 10.1093/emph/eou022. Review.

35.

Evolution of mammalian pregnancy and the origin of the decidual stromal cell.

Wagner GP, Kin K, Muglia L, Pavlicev M.

Int J Dev Biol. 2014;58(2-4):117-26. doi: 10.1387/ijdb.130335gw. Review.

36.

The World Health Organization Quality of Life instrument for people with intellectual and physical disabilities (WHOQOL-Dis): evidence of validity of the Brazilian version.

Bredemeier J, Wagner GP, Agranonik M, Perez TS, Fleck MP.

BMC Public Health. 2014 May 30;14:538. doi: 10.1186/1471-2458-14-538.

37.

Immunohistological study of the endometrial stromal fibroblasts in the opossum, Monodelphis domestica: evidence for homology with eutherian stromal fibroblasts.

Kin K, Maziarz J, Wagner GP.

Biol Reprod. 2014 May;90(5):111. doi: 10.1095/biolreprod.113.115139. Epub 2014 Apr 16.

PMID:
24740599
38.

Bringing the cognitive estimation task into the 21st century: normative data on two new parallel forms.

MacPherson SE, Wagner GP, Murphy P, Bozzali M, Cipolotti L, Shallice T.

PLoS One. 2014 Mar 26;9(3):e92554. doi: 10.1371/journal.pone.0092554. eCollection 2014. Erratum in: PLoS One. 2014;9(7):e104483.

39.

Evidence for independent evolution of functional progesterone withdrawal in primates and guinea pigs.

Nnamani MC, Plaza S, Romero R, Wagner GP.

Evol Med Public Health. 2013 Jan;2013(1):273-88. doi: 10.1093/emph/eot022. Epub 2013 Dec 3.

40.

The evolution of phenotypic correlations and "developmental memory".

Watson RA, Wagner GP, Pavlicev M, Weinreich DM, Mills R.

Evolution. 2014 Apr;68(4):1124-38. doi: 10.1111/evo.12337. Epub 2014 Feb 1.

41.

Genomic correlates of relationship QTL involved in fore- versus hind limb divergence in mice.

Pavlicev M, Wagner GP, Noonan JP, Hallgrímsson B, Cheverud JM.

Genome Biol Evol. 2013;5(10):1926-36. doi: 10.1093/gbe/evt144.

42.

On the definition and measurement of pleiotropy.

Zhang J, Wagner GP.

Trends Genet. 2013 Jul;29(7):383-4. doi: 10.1016/j.tig.2013.05.002. Epub 2013 May 31. No abstract available.

PMID:
23727272
43.

Francis (Frank) Hugh Ruddle (1929-2013).

Amemiya CT, Wagner GP.

J Exp Zool B Mol Dev Evol. 2013 Jul;320(5):273-5. doi: 10.1002/jez.b.22509. Epub 2013 May 6. No abstract available.

PMID:
23650107
44.

A model based criterion for gene expression calls using RNA-seq data.

Wagner GP, Kin K, Lynch VJ.

Theory Biosci. 2013 Sep;132(3):159-64. doi: 10.1007/s12064-013-0178-3. Epub 2013 Apr 25.

PMID:
23615947
45.

Genetics: The inner life of proteins.

Wagner GP.

Nature. 2012 Oct 25;490(7421):493-4. doi: 10.1038/490493a. No abstract available.

PMID:
23099402
46.

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples.

Wagner GP, Kin K, Lynch VJ.

Theory Biosci. 2012 Dec;131(4):281-5. doi: 10.1007/s12064-012-0162-3. Epub 2012 Aug 8.

PMID:
22872506
47.

An independent genome duplication inferred from Hox paralogs in the American paddlefish--a representative basal ray-finned fish and important comparative reference.

Crow KD, Smith CD, Cheng JF, Wagner GP, Amemiya CT.

Genome Biol Evol. 2012;4(9):937-53. doi: 10.1093/gbe/evs067. Epub 2012 Jul 31.

48.

Next Gen Devo-Evo.

Wagner GP.

J Exp Zool B Mol Dev Evol. 2012 Nov;318(7):519-20. doi: 10.1002/jez.b.22463. Epub 2012 Jul 12. No abstract available.

PMID:
22791647
49.

Transposable element recruitments in the mammalian placenta: impacts and mechanisms.

Emera D, Wagner GP.

Brief Funct Genomics. 2012 Jul;11(4):267-76. doi: 10.1093/bfgp/els013. Epub 2012 Jun 28. Review.

PMID:
22753775
50.

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