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Items: 33

1.

Quantitative modelling predicts the impact of DNA methylation on RNA polymerase II traffic.

Cholewa-Waclaw J, Shah R, Webb S, Chhatbar K, Ramsahoye B, Pusch O, Yu M, Greulich P, Waclaw B, Bird AP.

Proc Natl Acad Sci U S A. 2019 Jul 9. pii: 201903549. doi: 10.1073/pnas.1903549116. [Epub ahead of print]

2.

Spatiotemporal regulation of clonogenicity in colorectal cancer xenografts.

van der Heijden M, Miedema DM, Waclaw B, Veenstra VL, Lecca MC, Nijman LE, van Dijk E, van Neerven SM, Lodestijn SC, Lenos KJ, de Groot NE, Prasetyanti PR, Arricibita Varea A, Winton DJ, Medema JP, Morrissey E, Ylstra B, Nowak MA, Bijlsma MF, Vermeulen L.

Proc Natl Acad Sci U S A. 2019 Mar 26;116(13):6140-6145. doi: 10.1073/pnas.1813417116. Epub 2019 Mar 8.

3.

Bacterial growth: a statistical physicist's guide.

Allen RJ, Waclaw B.

Rep Prog Phys. 2019 Jan;82(1):016601. doi: 10.1088/1361-6633/aae546. Epub 2018 Oct 1. Review.

4.

Phenotypic Switching Can Speed up Microbial Evolution.

Tadrowski AC, Evans MR, Waclaw B.

Sci Rep. 2018 Jun 12;8(1):8941. doi: 10.1038/s41598-018-27095-9.

5.

Erratum: An exactly solvable, spatial model of mutation accumulation in cancer.

Paterson C, Nowak MA, Waclaw B.

Sci Rep. 2017 Oct 20;7:46900. doi: 10.1038/srep46900.

6.

Mechanical interactions in bacterial colonies and the surfing probability of beneficial mutations.

Farrell FD, Gralka M, Hallatschek O, Waclaw B.

J R Soc Interface. 2017 Jun;14(131). pii: 20170073. doi: 10.1098/rsif.2017.0073.

7.

Genes, environment, and "bad luck".

Nowak MA, Waclaw B.

Science. 2017 Mar 24;355(6331):1266-1267. doi: 10.1126/science.aam9746. No abstract available.

PMID:
28336626
8.

An exactly solvable, spatial model of mutation accumulation in cancer.

Paterson C, Nowak MA, Waclaw B.

Sci Rep. 2016 Dec 22;6:39511. doi: 10.1038/srep39511. Erratum in: Sci Rep. 2017 Oct 20;7:46900.

9.

Beyond the Hypercube: Evolutionary Accessibility of Fitness Landscapes with Realistic Mutational Networks.

Zagorski M, Burda Z, Waclaw B.

PLoS Comput Biol. 2016 Dec 9;12(12):e1005218. doi: 10.1371/journal.pcbi.1005218. eCollection 2016 Dec.

10.

Antibiotic resistance: a physicist's view.

Allen R, Waclaw B.

Phys Biol. 2016 Aug 11;13(4):045001. doi: 10.1088/1478-3975/13/4/045001.

11.

Allele surfing promotes microbial adaptation from standing variation.

Gralka M, Stiewe F, Farrell F, Möbius W, Waclaw B, Hallatschek O.

Ecol Lett. 2016 Aug;19(8):889-98. doi: 10.1111/ele.12625. Epub 2016 Jun 16.

12.

Evolution of Drug Resistance in Bacteria.

Waclaw B.

Adv Exp Med Biol. 2016;915:49-67. doi: 10.1007/978-3-319-32189-9_5. Review.

PMID:
27193537
13.

Lower glycolysis carries a higher flux than any biochemically possible alternative.

Court SJ, Waclaw B, Allen RJ.

Nat Commun. 2015 Sep 29;6:8427. doi: 10.1038/ncomms9427.

14.

A spatial model predicts that dispersal and cell turnover limit intratumour heterogeneity.

Waclaw B, Bozic I, Pittman ME, Hruban RH, Vogelstein B, Nowak MA.

Nature. 2015 Sep 10;525(7568):261-4. doi: 10.1038/nature14971. Epub 2015 Aug 26.

15.

The role of mechanical forces in the planar-to-bulk transition in growing Escherichia coli microcolonies.

Grant MA, Wacław B, Allen RJ, Cicuta P.

J R Soc Interface. 2014 Aug 6;11(97):20140400. doi: 10.1098/rsif.2014.0400.

16.

Mechanically driven growth of quasi-two-dimensional microbial colonies.

Farrell FD, Hallatschek O, Marenduzzo D, Waclaw B.

Phys Rev Lett. 2013 Oct 18;111(16):168101. Epub 2013 Oct 14.

PMID:
24182305
17.

Mutational pathway determines whether drug gradients accelerate evolution of drug-resistant cells.

Greulich P, Waclaw B, Allen RJ.

Phys Rev Lett. 2012 Aug 24;109(8):088101. Epub 2012 Aug 20.

PMID:
23002776
18.

Explosive condensation in a mass transport model.

Waclaw B, Evans MR.

Phys Rev Lett. 2012 Feb 17;108(7):070601. Epub 2012 Feb 13.

PMID:
22401186
19.

Dynamical phase transition in a model for evolution with migration.

Waclaw B, Allen RJ, Evans MR.

Phys Rev Lett. 2010 Dec 31;105(26):268101. Epub 2010 Dec 22.

PMID:
21231713
20.

Relationship between preoperative serum markers CA 15-3 and CEA and relapse of the disease in elderly (>65 years) women with breast cancer.

Lumachi F, Basso SM, Bonamini M, Marzano B, Milan E, Waclaw BU, Chiara GB.

Anticancer Res. 2010 Jun;30(6):2331-4.

PMID:
20651388
21.

Spectrum of the product of independent random Gaussian matrices.

Burda Z, Janik RA, Waclaw B.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Apr;81(4 Pt 1):041132. Epub 2010 Apr 27.

PMID:
20481702
22.

Incidence of arm lymphoedema following sentinel node biopsy, axillary sampling and axillary dissection in patients with breast cancer.

Lumachi F, Basso SM, Bonamini M, Marino F, Marzano B, Milan E, Waclaw BU, Chiara GB.

In Vivo. 2009 Nov-Dec;23(6):1017-20.

23.

Tuning the shape of the condensate in spontaneous symmetry breaking.

Waclaw B, Sopik J, Janke W, Meyer-Ortmanns H.

Phys Rev Lett. 2009 Aug 21;103(8):080602. Epub 2009 Aug 20.

PMID:
19792704
24.

Localization of the maximal entropy random walk.

Burda Z, Duda J, Luck JM, Waclaw B.

Phys Rev Lett. 2009 Apr 24;102(16):160602. Epub 2009 Apr 23.

PMID:
19518691
25.

Approaching the thermodynamic limit in equilibrated scale-free networks.

Waclaw B, Bogacz L, Janke W.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Dec;78(6 Pt 1):061125. Epub 2008 Dec 23.

PMID:
19256820
26.

Counting metastable states of Ising spin glasses on arbitrary graphs.

Waclaw B, Burda Z.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Apr;77(4 Pt 1):041114. Epub 2008 Apr 17.

PMID:
18517585
27.

Condensation in zero-range processes on inhomogeneous networks.

Waclaw B, Bogacz L, Burda Z, Janke W.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Oct;76(4 Pt 2):046114. Epub 2007 Oct 24.

PMID:
17995067
28.

Finite-size effects in Barabási-Albert growing networks.

Waclaw B, Sokolov IM.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 May;75(5 Pt 2):056114. Epub 2007 May 25.

PMID:
17677140
29.

Balls-in-boxes condensation on networks.

Bogacz L, Burda Z, Janke W, Waclaw B.

Chaos. 2007 Jun;17(2):026112.

PMID:
17614699
30.

Spectral properties of empirical covariance matrices for data with power-law tails.

Burda Z, Görlich AT, Wacław B.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Oct;74(4 Pt 1):041129. Epub 2006 Oct 31.

PMID:
17155044
31.

Spectral moments of correlated Wishart matrices.

Burda Z, Jurkiewicz J, Wacław B.

Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Feb;71(2 Pt 2):026111. Epub 2005 Feb 10.

PMID:
15783382
32.

Adrenal incidentalomas: indications for surgery.

Pasqual E, Bacchetti S, Waclaw B, Bertolissi F, Grimaldi F, Cagol PP.

Chir Ital. 2003 Jan-Feb;55(1):29-34. Review.

PMID:
12633034
33.

Adrenal angiosarcoma: report of a case.

Pasqual E, Bertolissi F, Grimaldi F, Beltrami CA, Scott CA, Bacchetti S, Waclaw BU, Cagol PP.

Surg Today. 2002;32(6):563-5. Review.

PMID:
12107788

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