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Items: 1 to 50 of 70

1.

First steps towards mitochondrial pan-genomics: detailed analysis of Fusarium graminearum mitogenomes.

Brankovics B, Kulik T, Sawicki J, Bilska K, Zhang H, de Hoog GS, van der Lee TA, Waalwijk C, van Diepeningen AD.

PeerJ. 2018 Dec 19;6:e5963. doi: 10.7717/peerj.5963. eCollection 2018.

2.

Aspergillus species from Brazilian dry beans and their toxigenic potential.

Santos-Ciscon BAD, van Diepeningen A, Machado JDC, Dias IE, Waalwijk C.

Int J Food Microbiol. 2019 Mar 2;292:91-100. doi: 10.1016/j.ijfoodmicro.2018.12.006. Epub 2018 Dec 10.

PMID:
30584973
3.

Karyotype evolution in Fusarium.

Waalwijk C, Taga M, Zheng SL, Proctor RH, Vaughan MM, O'Donnell K.

IMA Fungus. 2018 Jun;9(1):13-26. doi: 10.5598/imafungus.2018.09.01.02. Epub 2018 Feb 26.

4.

Evolution and Diversity of Biosynthetic Gene Clusters in Fusarium.

Hoogendoorn K, Barra L, Waalwijk C, Dickschat JS, van der Lee TAJ, Medema MH.

Front Microbiol. 2018 Jun 5;9:1158. doi: 10.3389/fmicb.2018.01158. eCollection 2018.

5.

The Fusarium graminearum Histone Acetyltransferases Are Important for Morphogenesis, DON Biosynthesis, and Pathogenicity.

Kong X, van Diepeningen AD, van der Lee TAJ, Waalwijk C, Xu J, Xu J, Zhang H, Chen W, Feng J.

Front Microbiol. 2018 Apr 26;9:654. doi: 10.3389/fmicb.2018.00654. eCollection 2018.

6.

Host and Cropping System Shape the Fusarium Population: 3ADON-Producers Are Ubiquitous in Wheat Whereas NIV-Producers Are More Prevalent in Rice.

Yang M, Zhang H, Kong X, van der Lee T, Waalwijk C, van Diepeningen A, Xu J, Xu J, Chen W, Feng J.

Toxins (Basel). 2018 Mar 8;10(3). pii: E115. doi: 10.3390/toxins10030115.

7.

MycoKey Round Table Discussions of Future Directions in Research on Chemical Detection Methods, Genetics and Biodiversity of Mycotoxins.

Leslie JF, Lattanzio V, Audenaert K, Battilani P, Cary J, Chulze SN, De Saeger S, Gerardino A, Karlovsky P, Liao YC, Maragos CM, Meca G, Medina A, Moretti A, Munkvold G, Mulè G, Njobeh P, Pecorelli I, Perrone G, Pietri A, Palazzini JM, Proctor RH, Rahayu ES, Ramírez ML, Samson R, Stroka J, Sulyok M, Sumarah M, Waalwijk C, Zhang Q, Zhang H, Logrieco AF.

Toxins (Basel). 2018 Mar 1;10(3). pii: E109. doi: 10.3390/toxins10030109.

8.

Stress and sexual reproduction affect the dynamics of the wheat pathogen effector AvrStb6 and strobilurin resistance.

Kema GHJ, Mirzadi Gohari A, Aouini L, Gibriel HAY, Ware SB, van den Bosch F, Manning-Smith R, Alonso-Chavez V, Helps J, Ben M'Barek S, Mehrabi R, Diaz-Trujillo C, Zamani E, Schouten HJ, van der Lee TAJ, Waalwijk C, de Waard MA, de Wit PJGM, Verstappen ECP, Thomma BPHJ, Meijer HJG, Seidl MF.

Nat Genet. 2018 Mar;50(3):375-380. doi: 10.1038/s41588-018-0052-9. Epub 2018 Feb 12.

PMID:
29434356
9.

Mitochondrial genomes reveal recombination in the presumed asexual Fusarium oxysporum species complex.

Brankovics B, van Dam P, Rep M, de Hoog GS, J van der Lee TA, Waalwijk C, van Diepeningen AD.

BMC Genomics. 2017 Sep 18;18(1):735. doi: 10.1186/s12864-017-4116-5.

10.

Genetic Divergence and Chemotype Diversity in the Fusarium Head Blight Pathogen Fusarium poae.

Vanheule A, De Boevre M, Moretti A, Scauflaire J, Munaut F, De Saeger S, Bekaert B, Haesaert G, Waalwijk C, van der Lee T, Audenaert K.

Toxins (Basel). 2017 Aug 23;9(9). pii: E255. doi: 10.3390/toxins9090255.

11.

Targeting Trichothecene Biosynthetic Genes.

Wei S, van der Lee T, Verstappen E, van Gent M, Waalwijk C.

Methods Mol Biol. 2017;1542:173-189.

PMID:
27924538
12.

A single-nucleotide-polymorphism-based genotyping assay for simultaneous detection of different carbendazim-resistant genotypes in the Fusarium graminearum species complex.

Zhang H, Brankovics B, van der Lee TA, Waalwijk C, van Diepeningen AA, Xu J, Xu J, Chen W, Feng J.

PeerJ. 2016 Oct 25;4:e2609. eCollection 2016.

13.

Living apart together: crosstalk between the core and supernumerary genomes in a fungal plant pathogen.

Vanheule A, Audenaert K, Warris S, van de Geest H, Schijlen E, Höfte M, De Saeger S, Haesaert G, Waalwijk C, van der Lee T.

BMC Genomics. 2016 Aug 23;17:670. doi: 10.1186/s12864-016-2941-6.

14.

The geographic distribution and complex evolutionary history of the NX-2 trichothecene chemotype from Fusarium graminearum.

Kelly A, Proctor RH, Belzile F, Chulze SN, Clear RM, Cowger C, Elmer W, Lee T, Obanor F, Waalwijk C, Ward TJ.

Fungal Genet Biol. 2016 Oct;95:39-48. doi: 10.1016/j.fgb.2016.08.003. Epub 2016 Aug 4.

PMID:
27497828
15.

GRAbB: Selective Assembly of Genomic Regions, a New Niche for Genomic Research.

Brankovics B, Zhang H, van Diepeningen AD, van der Lee TA, Waalwijk C, de Hoog GS.

PLoS Comput Biol. 2016 Jun 16;12(6):e1004753. doi: 10.1371/journal.pcbi.1004753. eCollection 2016 Jun.

16.

Worse Comes to Worst: Bananas and Panama Disease--When Plant and Pathogen Clones Meet.

Ordonez N, Seidl MF, Waalwijk C, Drenth A, Kilian A, Thomma BP, Ploetz RC, Kema GH.

PLoS Pathog. 2015 Nov 19;11(11):e1005197. doi: 10.1371/journal.ppat.1005197. eCollection 2015. Review. No abstract available.

17.

Diagnosis of Fusarium Infections: Approaches to Identification by the Clinical Mycology Laboratory.

van Diepeningen AD, Brankovics B, Iltes J, van der Lee TA, Waalwijk C.

Curr Fungal Infect Rep. 2015;9(3):135-143. Review.

18.

Biogeography of Fusarium graminearum species complex and chemotypes: a review.

van der Lee T, Zhang H, van Diepeningen A, Waalwijk C.

Food Addit Contam Part A Chem Anal Control Expo Risk Assess. 2015;32(4):453-60. doi: 10.1080/19440049.2014.984244. Epub 2015 Jan 8. Review.

19.

First Report of Fusarium oxysporum f. sp. cubense Tropical Race 4 Associated with Panama Disease of Banana outside Southeast Asia.

García-Bastidas F, Ordóñez N, Konkol J, Al-Qasim M, Naser Z, Abdelwali M, Salem N, Waalwijk C, Ploetz RC, Kema GHJ.

Plant Dis. 2014 May;98(5):694. doi: 10.1094/PDIS-09-13-0954-PDN.

PMID:
30708524
20.

Relocation of genes generates non-conserved chromosomal segments in Fusarium graminearum that show distinct and co-regulated gene expression patterns.

Zhao C, Waalwijk C, de Wit PJ, Tang D, van der Lee T.

BMC Genomics. 2014 Mar 13;15:191. doi: 10.1186/1471-2164-15-191.

21.

Birth, death and horizontal transfer of the fumonisin biosynthetic gene cluster during the evolutionary diversification of Fusarium.

Proctor RH, Van Hove F, Susca A, Stea G, Busman M, van der Lee T, Waalwijk C, Moretti A, Ward TJ.

Mol Microbiol. 2013 Oct;90(2):290-306. doi: 10.1111/mmi.12362. Epub 2013 Aug 28.

22.

Simultaneous real-time PCR detection of Fusarium asiaticum, F. ussurianum and F. vorosii, representing the Asian clade of the F. graminearum species complex.

Fernández-Ortuño D, Waalwijk C, Van der Lee T, Fan J, Atkins S, West JS, Fraaije BA.

Int J Food Microbiol. 2013 Aug 16;166(1):148-54. doi: 10.1016/j.ijfoodmicro.2013.06.007. Epub 2013 Jun 22.

PMID:
23867363
23.

One fungus, one name: defining the genus Fusarium in a scientifically robust way that preserves longstanding use.

Geiser DM, Aoki T, Bacon CW, Baker SE, Bhattacharyya MK, Brandt ME, Brown DW, Burgess LW, Chulze S, Coleman JJ, Correll JC, Covert SF, Crous PW, Cuomo CA, De Hoog GS, Di Pietro A, Elmer WH, Epstein L, Frandsen RJ, Freeman S, Gagkaeva T, Glenn AE, Gordon TR, Gregory NF, Hammond-Kosack KE, Hanson LE, Jímenez-Gasco Mdel M, Kang S, Kistler HC, Kuldau GA, Leslie JF, Logrieco A, Lu G, Lysøe E, Ma LJ, McCormick SP, Migheli Q, Moretti A, Munaut F, O'Donnell K, Pfenning L, Ploetz RC, Proctor RH, Rehner SA, Robert VA, Rooney AP, Bin Salleh B, Scandiani MM, Scauflaire J, Short DP, Steenkamp E, Suga H, Summerell BA, Sutton DA, Thrane U, Trail F, Van Diepeningen A, Vanetten HD, Viljoen A, Waalwijk C, Ward TJ, Wingfield MJ, Xu JR, Yang XB, Yli-Mattila T, Zhang N.

Phytopathology. 2013 May;103(5):400-8. doi: 10.1094/PHYTO-07-12-0150-LE.

24.

RNA-Seq analysis reveals new gene models and alternative splicing in the fungal pathogen Fusarium graminearum.

Zhao C, Waalwijk C, de Wit PJ, Tang D, van der Lee T.

BMC Genomics. 2013 Jan 16;14:21. doi: 10.1186/1471-2164-14-21.

25.

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants.

D'Hont A, Denoeud F, Aury JM, Baurens FC, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M, Da Silva C, Jabbari K, Cardi C, Poulain J, Souquet M, Labadie K, Jourda C, Lengellé J, Rodier-Goud M, Alberti A, Bernard M, Correa M, Ayyampalayam S, Mckain MR, Leebens-Mack J, Burgess D, Freeling M, Mbéguié-A-Mbéguié D, Chabannes M, Wicker T, Panaud O, Barbosa J, Hribova E, Heslop-Harrison P, Habas R, Rivallan R, Francois P, Poiron C, Kilian A, Burthia D, Jenny C, Bakry F, Brown S, Guignon V, Kema G, Dita M, Waalwijk C, Joseph S, Dievart A, Jaillon O, Leclercq J, Argout X, Lyons E, Almeida A, Jeridi M, Dolezel J, Roux N, Risterucci AM, Weissenbach J, Ruiz M, Glaszmann JC, Quétier F, Yahiaoui N, Wincker P.

Nature. 2012 Aug 9;488(7410):213-7. doi: 10.1038/nature11241.

PMID:
22801500
26.

Occurrence of Fusarium Head Blight species and Fusarium mycotoxins in winter wheat in the Netherlands in 2009.

van der Fels-Klerx HJ, de Rijk TC, Booij CJ, Goedhart PW, Boers EA, Zhao C, Waalwijk C, Mol HG, van der Lee TA.

Food Addit Contam Part A Chem Anal Control Expo Risk Assess. 2012;29(11):1716-26. doi: 10.1080/19440049.2012.685891. Epub 2012 May 24.

PMID:
22624849
27.

Population analysis of the Fusarium graminearum species complex from wheat in China show a shift to more aggressive isolates.

Zhang H, Van der Lee T, Waalwijk C, Chen W, Xu J, Xu J, Zhang Y, Feng J.

PLoS One. 2012;7(2):e31722. doi: 10.1371/journal.pone.0031722. Epub 2012 Feb 20.

28.

EBR1, a novel Zn(2)Cys(6) transcription factor, affects virulence and apical dominance of the hyphal tip in Fusarium graminearum.

Zhao C, Waalwijk C, de Wit PJ, van der Lee T, Tang D.

Mol Plant Microbe Interact. 2011 Dec;24(12):1407-18. doi: 10.1094/MPMI-06-11-0158.

29.

Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis.

Goodwin SB, M'barek SB, Dhillon B, Wittenberg AH, Crane CF, Hane JK, Foster AJ, Van der Lee TA, Grimwood J, Aerts A, Antoniw J, Bailey A, Bluhm B, Bowler J, Bristow J, van der Burgt A, Canto-Canché B, Churchill AC, Conde-Ferràez L, Cools HJ, Coutinho PM, Csukai M, Dehal P, De Wit P, Donzelli B, van de Geest HC, van Ham RC, Hammond-Kosack KE, Henrissat B, Kilian A, Kobayashi AK, Koopmann E, Kourmpetis Y, Kuzniar A, Lindquist E, Lombard V, Maliepaard C, Martins N, Mehrabi R, Nap JP, Ponomarenko A, Rudd JJ, Salamov A, Schmutz J, Schouten HJ, Shapiro H, Stergiopoulos I, Torriani SF, Tu H, de Vries RP, Waalwijk C, Ware SB, Wiebenga A, Zwiers LH, Oliver RP, Grigoriev IV, Kema GH.

PLoS Genet. 2011 Jun;7(6):e1002070. doi: 10.1371/journal.pgen.1002070. Epub 2011 Jun 9.

30.

The genetic basis for 3-ADON and 15-ADON trichothecene chemotypes in Fusarium.

Alexander NJ, McCormick SP, Waalwijk C, van der Lee T, Proctor RH.

Fungal Genet Biol. 2011 May;48(5):485-95. doi: 10.1016/j.fgb.2011.01.003. Epub 2011 Jan 7.

PMID:
21216300
31.

Gibberella musae (Fusarium musae) sp. nov., a recently discovered species from banana is sister to F. verticillioides.

Van Hove F, Waalwijk C, Logrieco A, Munaut F, Moretti A.

Mycologia. 2011 May-Jun;103(3):570-85. doi: 10.3852/10-038. Epub 2010 Dec 21.

PMID:
21177490
32.

Population genetic analyses of Fusarium asiaticum populations from barley suggest a recent shift favoring 3ADON producers in southern China.

Zhang H, Zhang Z, van der Lee T, Chen WQ, Xu J, Xu JS, Yang L, Yu D, Waalwijk C, Feng J.

Phytopathology. 2010 Apr;100(4):328-36. doi: 10.1094/PHYTO-100-4-0328.

33.

Quantitative detection of pear-pathogenic Stemphylium vesicarium in orchards.

Köhl J, Groenenboom-de Haas BH, Kastelein P, Rossi V, Waalwijk C.

Phytopathology. 2009 Dec;99(12):1377-86. doi: 10.1094/PHYTO-99-12-1377.

34.

A two-locus DNA sequence database for typing plant and human pathogens within the Fusarium oxysporum species complex.

O'Donnell K, Gueidan C, Sink S, Johnston PR, Crous PW, Glenn A, Riley R, Zitomer NC, Colyer P, Waalwijk C, Lee Tv, Moretti A, Kang S, Kim HS, Geiser DM, Juba JH, Baayen RP, Cromey MG, Bithell S, Sutton DA, Skovgaard K, Ploetz R, Corby Kistler H, Elliott M, Davis M, Sarver BA.

Fungal Genet Biol. 2009 Dec;46(12):936-48. doi: 10.1016/j.fgb.2009.08.006. Epub 2009 Aug 26.

PMID:
19715767
35.

G(alpha) and Gbeta proteins regulate the cyclic AMP pathway that is required for development and pathogenicity of the phytopathogen Mycosphaerella graminicola.

Mehrabi R, Ben M'Barek S, van der Lee TA, Waalwijk C, de Wit PJ, Kema GH.

Eukaryot Cell. 2009 Jul;8(7):1001-13. doi: 10.1128/EC.00258-08. Epub 2009 May 1.

36.

Systematic Numbering of Vegetative Compatibility Groups in the Plant Pathogenic Fungus Fusarium oxysporum.

Kistler HC, Alabouvette C, Baayen RP, Bentley S, Brayford D, Coddington A, Correll J, Daboussi MJ, Elias K, Fernandez D, Gordon TR, Katan T, Kim HG, Leslie JF, Martyn RD, Migheli Q, Moore NY, O'Donnell K, Ploetz RC, Rutherford MA, Summerell B, Waalwijk C, Woo S.

Phytopathology. 1998 Jan;88(1):30-2. doi: 10.1094/PHYTO.1998.88.1.30. No abstract available.

37.

Gene Genealogies and AFLP Analyses in the Fusarium oxysporum Complex Identify Monophyletic and Nonmonophyletic Formae Speciales Causing Wilt and Rot Disease.

Baayen RP, O'Donnell K, Bonants PJ, Cigelnik E, Kroon LP, Roebroeck EJ, Waalwijk C.

Phytopathology. 2000 Aug;90(8):891-900. doi: 10.1094/PHYTO.2000.90.8.891.

38.

Fusarium populations on Chinese barley show a dramatic gradient in mycotoxin profiles.

Yang L, van der Lee T, Yang X, Yu D, Waalwijk C.

Phytopathology. 2008 Jun;98(6):719-27. doi: 10.1094/PHYTO-98-6-0719.

39.

Molecular diagnostics for the sigatoka disease complex of banana.

Arzanlou M, Abeln EC, Kema GH, Waalwijk C, Carlier J, Vries Id, Guzmán M, Crous PW.

Phytopathology. 2007 Sep;97(9):1112-8. doi: 10.1094/PHYTO-97-9-1112.

40.

Population Dynamics of Fusarium spp. and Microdochium nivale in Crops and Crop Residues of Winter Wheat.

Köhl J, de Haas BH, Kastelein P, Burgers SL, Waalwijk C.

Phytopathology. 2007 Aug;97(8):971-8. doi: 10.1094/PHYTO-97-8-0971.

41.

Molecular Relationships of Fungi Within the Fusarium redolens-F. hostae Clade.

Baayen RP, O'Donnell K, Breeuwsma S, Geiser DM, Waalwijk C.

Phytopathology. 2001 Nov;91(11):1037-44. doi: 10.1094/PHYTO.2001.91.11.1037.

42.

DNA Fingerprint Probe from Mycosphaerella graminicola Identifies an Active Transposable Element.

Goodwin SB, Cavaletto JR, Waalwijk C, Kema GH.

Phytopathology. 2001 Dec;91(12):1181-8. doi: 10.1094/PHYTO.2001.91.12.1181.

43.

Transposon-tagging identifies novel pathogenicity genes in Fusarium graminearum.

Dufresne M, van der Lee T, Ben M'barek S, Xu X, Zhang X, Liu T, Waalwijk C, Zhang W, Kema GH, Daboussi MJ.

Fungal Genet Biol. 2008 Dec;45(12):1552-61. doi: 10.1016/j.fgb.2008.09.004. Epub 2008 Sep 23. Erratum in: Fungal Genet Biol. 2009 Aug;46(8):614.

PMID:
18926918
44.

Large-scale gene discovery in the septoria tritici blotch fungus Mycosphaerella graminicola with a focus on in planta expression.

Kema GH, van der Lee TA, Mendes O, Verstappen EC, Lankhorst RK, Sandbrink H, van der Burgt A, Zwiers LH, Csukai M, Waalwijk C.

Mol Plant Microbe Interact. 2008 Sep;21(9):1249-60. doi: 10.1094/MPMI-21-9-1249.

45.

The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization.

Cuomo CA, Güldener U, Xu JR, Trail F, Turgeon BG, Di Pietro A, Walton JD, Ma LJ, Baker SE, Rep M, Adam G, Antoniw J, Baldwin T, Calvo S, Chang YL, Decaprio D, Gale LR, Gnerre S, Goswami RS, Hammond-Kosack K, Harris LJ, Hilburn K, Kennell JC, Kroken S, Magnuson JK, Mannhaupt G, Mauceli E, Mewes HW, Mitterbauer R, Muehlbauer G, Münsterkötter M, Nelson D, O'donnell K, Ouellet T, Qi W, Quesneville H, Roncero MI, Seong KY, Tetko IV, Urban M, Waalwijk C, Ward TJ, Yao J, Birren BW, Kistler HC.

Science. 2007 Sep 7;317(5843):1400-2.

46.

Genetic factors affecting sexual reproduction in toxigenic Fusarium species.

Hornok L, Waalwijk C, Leslie JF.

Int J Food Microbiol. 2007 Oct 20;119(1-2):54-8. Epub 2007 Jul 31. Review.

PMID:
17720271
47.

Discovery of a functional Mycosphaerella teleomorph in the presumed asexual barley pathogen Septoria passerinii.

Ware SB, Verstappen EC, Breeden J, Cavaletto JR, Goodwin SB, Waalwijk C, Crous PW, Kema GH.

Fungal Genet Biol. 2007 May;44(5):389-97. Epub 2006 Dec 16.

PMID:
17267248
48.

Isolation and characterization of the mating type locus of Mycosphaerella fijiensis, the causal agent of black leaf streak disease of banana.

Conde-Ferráez L, Waalwijk C, Canto-Canché BB, Kema GH, Crous PW, James AC, Abeln EC.

Mol Plant Pathol. 2007 Jan;8(1):111-20. doi: 10.1111/j.1364-3703.2006.00376.x.

PMID:
20507483
49.

Tagging target genes of the MAT1-2-1 transcription factor in Fusarium verticillioides (Gibberella fujikuroi MP-A).

Keszthelyi A, Jeney A, Kerényi Z, Mendes O, Waalwijk C, Hornok L.

Antonie Van Leeuwenhoek. 2007 May;91(4):373-91. Epub 2006 Nov 24.

PMID:
17124547
50.

The MAP kinase-encoding gene MgFus3 of the non-appressorium phytopathogen Mycosphaerella graminicola is required for penetration and in vitro pycnidia formation.

Cousin A, Mehrabi R, Guilleroux M, Dufresne M, VAN DER Lee T, Waalwijk C, Langin T, Kema GH.

Mol Plant Pathol. 2006 Jul;7(4):269-78. doi: 10.1111/j.1364-3703.2006.00337.x.

PMID:
20507446

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