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Items: 15

1.

Occurrence of cross-resistance and β-lactam seesaw effect in glycopeptide-, lipopeptide- and lipoglycopeptide-resistant MRSA correlates with membrane phosphatidylglycerol levels.

Hines KM, Shen T, Ashford NK, Waalkes A, Penewit K, Holmes EA, McLean K, Salipante SJ, Werth BJ, Xu L.

J Antimicrob Chemother. 2020 Feb 4. pii: dkz562. doi: 10.1093/jac/dkz562. [Epub ahead of print]

PMID:
32016379
2.

The Rhododendron Genome and Chromosomal Organization Provide Insight into Shared Whole-Genome Duplications across the Heath Family (Ericaceae).

Soza VL, Lindsley D, Waalkes A, Ramage E, Patwardhan RP, Burton JN, Adey A, Kumar A, Qiu R, Shendure J, Hall B.

Genome Biol Evol. 2019 Dec 1;11(12):3353-3371. doi: 10.1093/gbe/evz245.

3.

Open-Sourced CIViC Annotation Pipeline to Identify and Annotate Clinically Relevant Variants Using Single-Molecule Molecular Inversion Probes.

Barnell EK, Waalkes A, Mosior MC, Penewit K, Cotto KC, Danos AM, Sheta LM, Campbell KM, Krysiak K, Rieke D, Spies NC, Skidmore ZL, Pritchard CC, Fehniger TA, Uppaluri R, Govindan R, Griffith M, Salipante SJ, Griffith OL.

JCO Clin Cancer Inform. 2019 Oct;3:1-12. doi: 10.1200/CCI.19.00077.

4.

Genomic Analysis Identifies Novel Pseudomonas aeruginosa Resistance Genes under Selection during Inhaled Aztreonam Therapy In Vivo.

McLean K, Lee D, Holmes EA, Penewit K, Waalkes A, Ren M, Lee SA, Gasper J, Manoil C, Salipante SJ.

Antimicrob Agents Chemother. 2019 Aug 23;63(9). pii: e00866-19. doi: 10.1128/AAC.00866-19. Print 2019 Sep.

5.

Erratum for Penewit et al., "Efficient and Scalable Precision Genome Editing in Staphylococcus aureus through Conditional Recombineering and CRISPR/Cas9-Mediated Counterselection".

Penewit K, Holmes EA, McLean K, Ren M, Waalkes A, Salipante SJ.

mBio. 2019 Jan 15;10(1). pii: e02698-18. doi: 10.1128/mBio.02698-18. No abstract available.

6.

Artificial Selection for Pathogenicity Mutations in Staphylococcus aureus Identifies Novel Factors Relevant to Chronic Infection.

McLean K, Holmes EA, Penewit K, Lee DK, Hardy SR, Ren M, Krist MP, Huang K, Waalkes A, Salipante SJ.

Infect Immun. 2019 Mar 25;87(4). pii: e00884-18. doi: 10.1128/IAI.00884-18. Print 2019 Apr.

7.

Erratum for Penewit et al., "Efficient and Scalable Precision Genome Editing in Staphylococcus aureus through Conditional Recombineering and CRISPR/Cas9-Mediated Counterselection".

Penewit K, Holmes EA, McLean K, Ren M, Waalkes A, Salipante SJ.

mBio. 2018 Oct 2;9(5). pii: e01839-18. doi: 10.1128/mBio.01839-18. No abstract available.

8.

Accurate Pan-Cancer Molecular Diagnosis of Microsatellite Instability by Single-Molecule Molecular Inversion Probe Capture and High-Throughput Sequencing.

Waalkes A, Smith N, Penewit K, Hempelmann J, Konnick EQ, Hause RJ, Pritchard CC, Salipante SJ.

Clin Chem. 2018 Jun;64(6):950-958. doi: 10.1373/clinchem.2017.285981. Epub 2018 Apr 9.

9.

Ultrasensitive Detection of Chimerism by Single-Molecule Molecular Inversion Probe Capture and High-Throughput Sequencing of Copy Number Deletion Polymorphisms.

Wu D, Waalkes A, Penewit K, Salipante SJ.

Clin Chem. 2018 Jun;64(6):938-949. doi: 10.1373/clinchem.2017.284737. Epub 2018 Mar 16.

10.

Efficient and Scalable Precision Genome Editing in Staphylococcus aureus through Conditional Recombineering and CRISPR/Cas9-Mediated Counterselection.

Penewit K, Holmes EA, McLean K, Ren M, Waalkes A, Salipante SJ.

mBio. 2018 Feb 20;9(1). pii: e00067-18. doi: 10.1128/mBio.00067-18. Erratum in: mBio. 2018 Oct 2;9(5):. mBio. 2019 Jan 15;10(1):.

11.

Characterization of the Mechanisms of Daptomycin Resistance among Gram-Positive Bacterial Pathogens by Multidimensional Lipidomics.

Hines KM, Waalkes A, Penewit K, Holmes EA, Salipante SJ, Werth BJ, Xu L.

mSphere. 2017 Dec 13;2(6). pii: e00492-17. doi: 10.1128/mSphere.00492-17. eCollection 2017 Nov-Dec.

12.

Evolved Aztreonam Resistance Is Multifactorial and Can Produce Hypervirulence in Pseudomonas aeruginosa.

Jorth P, McLean K, Ratjen A, Secor PR, Bautista GE, Ravishankar S, Rezayat A, Garudathri J, Harrison JJ, Harwood RA, Penewit K, Waalkes A, Singh PK, Salipante SJ.

mBio. 2017 Oct 31;8(5). pii: e00517-17. doi: 10.1128/mBio.00517-17.

13.

Emergence of dalbavancin non-susceptible, vancomycin-intermediate Staphylococcus aureus (VISA) after treatment of MRSA central line-associated bloodstream infection with a dalbavancin- and vancomycin-containing regimen.

Werth BJ, Jain R, Hahn A, Cummings L, Weaver T, Waalkes A, Sengupta D, Salipante SJ, Rakita RM, Butler-Wu SM.

Clin Microbiol Infect. 2018 Apr;24(4):429.e1-429.e5. doi: 10.1016/j.cmi.2017.07.028. Epub 2017 Aug 3.

14.

Ultrasensitive detection of acute myeloid leukemia minimal residual disease using single molecule molecular inversion probes.

Waalkes A, Penewit K, Wood BL, Wu D, Salipante SJ.

Haematologica. 2017 Sep;102(9):1549-1557. doi: 10.3324/haematol.2017.169136. Epub 2017 Jun 1.

15.

Efficient Identification of Murine M2 Macrophage Peptide Targeting Ligands by Phage Display and Next-Generation Sequencing.

Liu GW, Livesay BR, Kacherovsky NA, Cieslewicz M, Lutz E, Waalkes A, Jensen MC, Salipante SJ, Pun SH.

Bioconjug Chem. 2015 Aug 19;26(8):1811-7. doi: 10.1021/acs.bioconjchem.5b00344. Epub 2015 Jul 28.

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