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Items: 1 to 50 of 106

1.

The role of homology and orthology in the phylogenomic analysis of metazoan gene content.

Pett W, Adamski M, Adamska M, Francis WR, Eitel M, Pisani D, Wörheide G.

Mol Biol Evol. 2019 Jan 28. doi: 10.1093/molbev/msz013. [Epub ahead of print]

PMID:
30690573
2.

Minimalist barcodes for sponges: a case study classifying African freshwater Spongillida.

Erpenbeck D, Steiner M, Schuster A, Genner MJ, Manconi R, Pronzato R, Ruthensteiner B, van den Spiegel D, van Soest RWM, Wörheide G.

Genome. 2019 Jan;62(1):1-10. doi: 10.1139/gen-2018-0098. Epub 2018 Dec 17.

PMID:
30557098
3.

Bearing the wrong identity: A case study of an Indo-Pacific common shallow water sponge of the genus Neopetrosia (Haplosclerida; Petrosiidae).

Setiawan E, Erpenbeck D, WÖrheide G, De Voogd NJ.

Zootaxa. 2018 Oct 15;4500(1):43-58. doi: 10.11646/zootaxa.4500.1.2.

PMID:
30486076
4.

Identification of an aquaculture poriferan "Pest with Potential" and its phylogenetic implications.

Galitz A, Cook SC, Ekins M, Hooper JNA, Naumann PT, de Voogd NJ, Abdul Wahab M, Wörheide G, Erpenbeck D.

PeerJ. 2018 Sep 24;6:e5586. doi: 10.7717/peerj.5586. eCollection 2018.

5.

Correction: Comparative genomics and the nature of placozoan species.

Eitel M, Francis WR, Varoqueaux F, Daraspe J, Osigus HJ, Krebs S, Vargas S, Blum H, Williams GA, Schierwater B, Wörheide G.

PLoS Biol. 2018 Sep 19;16(9):e3000032. doi: 10.1371/journal.pbio.3000032. eCollection 2018 Sep.

6.

Understanding Animal Evolution: The Added Value of Sponge Transcriptomics and Genomics: The disconnect between gene content and body plan evolution.

Renard E, Leys SP, Wörheide G, Borchiellini C.

Bioessays. 2018 Sep;40(9):e1700237. doi: 10.1002/bies.201700237. Epub 2018 Aug 2. Review.

PMID:
30070368
7.

Comparative genomics and the nature of placozoan species.

Eitel M, Francis WR, Varoqueaux F, Daraspe J, Osigus HJ, Krebs S, Vargas S, Blum H, Williams GA, Schierwater B, Wörheide G.

PLoS Biol. 2018 Jul 31;16(7):e2005359. doi: 10.1371/journal.pbio.2005359. eCollection 2018 Jul. Erratum in: PLoS Biol. 2018 Sep 19;16(9):e3000032.

8.

Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model.

Schuster A, Vargas S, Knapp IS, Pomponi SA, Toonen RJ, Erpenbeck D, Wörheide G.

BMC Evol Biol. 2018 Jul 18;18(1):114. doi: 10.1186/s12862-018-1230-1.

9.

Modified parallel strategies for preparation of heteroduplex plasmids for in vitro mismatch repair assays.

Shimpi GG, Vargas S, Wörheide G.

Anal Biochem. 2018 Sep 1;556:35-39. doi: 10.1016/j.ab.2018.06.020. Epub 2018 Jun 22.

PMID:
29940140
10.

A new species of the calcareous sponge genus Leuclathrina (Calcarea: Calcinea: Clathrinida) from the Maldives.

Voigt O, Ruthensteiner B, Leiva L, Fradusco B, WÖrheide G.

Zootaxa. 2018 Feb 20;4382(1):147-158. doi: 10.11646/zootaxa.4382.1.5.

PMID:
29689941
11.

A 16S rRNA gene sequencing and analysis protocol for the Illumina MiniSeq platform.

Pichler M, Coskun ÖK, Ortega-Arbulú AS, Conci N, Wörheide G, Vargas S, Orsi WD.

Microbiologyopen. 2018 Dec;7(6):e00611. doi: 10.1002/mbo3.611. Epub 2018 Mar 25.

12.

The last common ancestor of animals lacked the HIF pathway and respired in low-oxygen environments.

Mills DB, Francis WR, Vargas S, Larsen M, Elemans CP, Canfield DE, Wörheide G.

Elife. 2018 Feb 6;7. pii: e31176. doi: 10.7554/eLife.31176.

13.

Improved Modeling of Compositional Heterogeneity Supports Sponges as Sister to All Other Animals.

Feuda R, Dohrmann M, Pett W, Philippe H, Rota-Stabelli O, Lartillot N, Wörheide G, Pisani D.

Curr Biol. 2017 Dec 18;27(24):3864-3870.e4. doi: 10.1016/j.cub.2017.11.008. Epub 2017 Nov 30.

14.

Comparative mitogenomics, phylogeny and evolutionary history of Leptogorgia (Gorgoniidae).

Poliseno A, Feregrino C, Sartoretto S, Aurelle D, Wörheide G, McFadden CS, Vargas S.

Mol Phylogenet Evol. 2017 Oct;115:181-189. doi: 10.1016/j.ympev.2017.08.001. Epub 2017 Aug 4.

PMID:
28782594
15.

Similar Ratios of Introns to Intergenic Sequence across Animal Genomes.

Francis WR, Wörheide G.

Genome Biol Evol. 2017 Jun 1;9(6):1582-1598. doi: 10.1093/gbe/evx103.

16.

Mitochondrial RNA processing in absence of tRNA punctuations in octocorals.

Shimpi GG, Vargas S, Poliseno A, Wörheide G.

BMC Mol Biol. 2017 Jun 17;18(1):16. doi: 10.1186/s12867-017-0093-0.

17.

Dating early animal evolution using phylogenomic data.

Dohrmann M, Wörheide G.

Sci Rep. 2017 Jun 15;7(1):3599. doi: 10.1038/s41598-017-03791-w.

18.

Advancing Genomics through the Global Invertebrate Genomics Alliance (GIGA).

Voolstra CR; GIGA Community of Scientists (COS), Wörheide G, Lopez JV.

Invertebr Syst. 2017 Mar;31(1):1-7. Epub 2017 Mar 16.

19.

Spicule formation in calcareous sponges: Coordinated expression of biomineralization genes and spicule-type specific genes.

Voigt O, Adamska M, Adamski M, Kittelmann A, Wencker L, Wörheide G.

Sci Rep. 2017 Apr 13;7:45658. doi: 10.1038/srep45658.

20.

Evolution of group I introns in Porifera: new evidence for intron mobility and implications for DNA barcoding.

Schuster A, Lopez JV, Becking LE, Kelly M, Pomponi SA, Wörheide G, Erpenbeck D, Cárdenas P.

BMC Evol Biol. 2017 Mar 20;17(1):82. doi: 10.1186/s12862-017-0928-9.

21.

A Large and Consistent Phylogenomic Dataset Supports Sponges as the Sister Group to All Other Animals.

Simion P, Philippe H, Baurain D, Jager M, Richter DJ, Di Franco A, Roure B, Satoh N, Quéinnec É, Ereskovsky A, Lapébie P, Corre E, Delsuc F, King N, Wörheide G, Manuel M.

Curr Biol. 2017 Apr 3;27(7):958-967. doi: 10.1016/j.cub.2017.02.031. Epub 2017 Mar 16.

22.

Volcanic ash supports a diverse bacterial community in a marine mesocosm.

Witt V, Ayris PM, Damby DE, Cimarelli C, Kueppers U, Dingwell DB, Wörheide G.

Geobiology. 2017 May;15(3):453-463. doi: 10.1111/gbi.12231. Epub 2017 Mar 3.

23.

Systematic relationships of five newly sequenced cervid species.

Heckeberg NS, Erpenbeck D, Wörheide G, Rössner GE.

PeerJ. 2016 Aug 4;4:e2307. doi: 10.7717/peerj.2307. eCollection 2016.

24.

A new species of lithistid sponge hiding within the Isabella mirabilis species complex (Porifera: Demospongiae: Tetractinellida) from seamounts of the Norfolk Ridge.

Ekins M, Erpenbeck D, Wörheide G, Hooper JN.

Zootaxa. 2016 Jul 7;4136(3):433-60. doi: 10.11646/zootaxa.4136.3.2.

PMID:
27395728
25.

Bottomless barrel-sponge species in the Indo-Pacific?

Setiawan E, Voogd NJ, Wörheide G, Erpenbeck D.

Zootaxa. 2016 Jul 6;4136(2):393-6. doi: 10.11646/zootaxa.4136.2.11.

PMID:
27395725
26.

Genetic structure of the crown-of-thorns seastar in the Pacific Ocean, with focus on Guam.

Tusso S, Morcinek K, Vogler C, Schupp PJ, Caballes CF, Vargas S, Wörheide G.

PeerJ. 2016 May 5;4:e1970. doi: 10.7717/peerj.1970. eCollection 2016.

27.

Homoplasious colony morphology and mito-nuclear phylogenetic discordance among Eastern Pacific octocorals.

Ament-Velásquez SL, Breedy O, Cortés J, Guzman HM, Wörheide G, Vargas S.

Mol Phylogenet Evol. 2016 May;98:373-81. doi: 10.1016/j.ympev.2016.02.023. Epub 2016 Mar 5.

PMID:
26953740
28.

Reply to Halanych et al.: Ctenophore misplacement is corroborated by independent datasets.

Pisani D, Pett W, Dohrmann M, Feuda R, Rota-Stabelli O, Philippe H, Lartillot N, Wörheide G.

Proc Natl Acad Sci U S A. 2016 Feb 23;113(8):E948-9. doi: 10.1073/pnas.1525718113. Epub 2016 Feb 9. No abstract available.

29.

Molecular biodiversity of Red Sea demosponges.

Erpenbeck D, Voigt O, Al-Aidaroos AM, Berumen ML, Büttner G, Catania D, Guirguis AN, Paulay G, Schätzle S, Wörheide G.

Mar Pollut Bull. 2016 Apr 30;105(2):507-14. doi: 10.1016/j.marpolbul.2015.12.004. Epub 2016 Jan 7.

PMID:
26776057
30.

Genomic data do not support comb jellies as the sister group to all other animals.

Pisani D, Pett W, Dohrmann M, Feuda R, Rota-Stabelli O, Philippe H, Lartillot N, Wörheide G.

Proc Natl Acad Sci U S A. 2015 Dec 15;112(50):15402-7. doi: 10.1073/pnas.1518127112. Epub 2015 Nov 30.

31.

The Skeleton Forming Proteome of an Early Branching Metazoan: A Molecular Survey of the Biomineralization Components Employed by the Coralline Sponge Vaceletia Sp.

Germer J, Mann K, Wörheide G, Jackson DJ.

PLoS One. 2015 Nov 4;10(11):e0140100. doi: 10.1371/journal.pone.0140100. eCollection 2015.

32.

New insights into the vertebral Hox code of archosaurs.

Böhmer C, Rauhut OW, Wörheide G.

Evol Dev. 2015 Sep-Oct;17(5):258-69. doi: 10.1111/ede.12136.

PMID:
26372060
33.

Correction: Diversity in a Cold Hot-Spot: DNA-Barcoding Reveals Patterns of Evolution among Antarctic Demosponges (Class Demospongiae, Phylum Porifera).

Vargas S, Kelly M, Schnabel K, Mills S, Bowden D, Wörheide G.

PLoS One. 2015 Jul 14;10(7):e0133096. doi: 10.1371/journal.pone.0133096. eCollection 2015. No abstract available.

34.

Diversity in a Cold Hot-Spot: DNA-Barcoding Reveals Patterns of Evolution among Antarctic Demosponges (Class Demospongiae, Phylum Porifera).

Vargas S, Kelly M, Schnabel K, Mills S, Bowden D, Wörheide G.

PLoS One. 2015 Jun 19;10(6):e0127573. doi: 10.1371/journal.pone.0127573. eCollection 2015. Erratum in: PLoS One. 2015;10(7):e0133096.

35.

Correlation between Hox code and vertebral morphology in archosaurs.

Böhmer C, Rauhut OW, Wörheide G.

Proc Biol Sci. 2015 Jul 7;282(1810). pii: 20150077. doi: 10.1098/rspb.2015.0077.

36.

The Magellania venosa Biomineralizing Proteome: A Window into Brachiopod Shell Evolution.

Jackson DJ, Mann K, Häussermann V, Schilhabel MB, Lüter C, Griesshaber E, Schmahl W, Wörheide G.

Genome Biol Evol. 2015 Apr 24;7(5):1349-62. doi: 10.1093/gbe/evv074.

37.

Deceptive desmas: molecular phylogenetics suggests a new classification and uncovers convergent evolution of lithistid demosponges.

Schuster A, Erpenbeck D, Pisera A, Hooper J, Bryce M, Fromont J, Wörheide G.

PLoS One. 2015 Jan 7;10(1):e116038. doi: 10.1371/journal.pone.0116038. eCollection 2015.

38.

A mitochondrial intron in a verongid sponge.

Erpenbeck D, Aryasari R, Hooper JN, Wörheide G.

J Mol Evol. 2015 Jan;80(1):13-7. doi: 10.1007/s00239-014-9653-9. Epub 2014 Nov 13.

PMID:
25391846
39.

The HMA-LMA dichotomy revisited: an electron microscopical survey of 56 sponge species.

Gloeckner V, Wehrl M, Moitinho-Silva L, Gernert C, Schupp P, Pawlik JR, Lindquist NL, Erpenbeck D, Wörheide G, Hentschel U.

Biol Bull. 2014 Aug;227(1):78-88.

PMID:
25216505
40.

Fossil descriptions: Private collections of fossils are a plus.

Rauhut OW, López-Arbarello A, Wörheide G.

Nature. 2014 Aug 28;512(7515):371. doi: 10.1038/512371c. No abstract available.

PMID:
25164737
41.

Revision of the brachiopod genus Amphithyris (Rhynchonelliformea: Platidiidae) with descriptions of two new species.

Nauendorf A, Wörheide G, Lüter C.

Zootaxa. 2014 Aug 7;3847(2):221-40. doi: 10.11646/zootaxa.3847.2.3.

PMID:
25112335
42.

Characterization of the proteinaceous skeletal organic matrix from the precious coral Corallium konojoi.

Rahman MA, Karl K, Nonaka M, Fujimura H, Shinjo R, Oomori T, Wörheide G.

Proteomics. 2014 Nov;14(21-22):2600-6. doi: 10.1002/pmic.201300519. Epub 2014 Oct 3.

PMID:
25044550
43.

Symbiophagy and biomineralization in the "living fossil" Astrosclera willeyana.

Jackson DJ, Wörheide G.

Autophagy. 2014 Mar;10(3):408-15. doi: 10.4161/auto.27319. Epub 2013 Dec 12.

44.

The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes.

GIGA Community of Scientists, Bracken-Grissom H, Collins AG, Collins T, Crandall K, Distel D, Dunn C, Giribet G, Haddock S, Knowlton N, Martindale M, Medina M, Messing C, O'Brien SJ, Paulay G, Putnam N, Ravasi T, Rouse GW, Ryan JF, Schulze A, Wörheide G, Adamska M, Bailly X, Breinholt J, Browne WE, Diaz MC, Evans N, Flot JF, Fogarty N, Johnston M, Kamel B, Kawahara AY, Laberge T, Lavrov D, Michonneau F, Moroz LL, Oakley T, Osborne K, Pomponi SA, Rhodes A, Santos SR, Satoh N, Thacker RW, Van de Peer Y, Voolstra CR, Welch DM, Winston J, Zhou X.

J Hered. 2014 Jan-Feb;105(1):1-18. doi: 10.1093/jhered/est084.

45.

Lock, stock and two different barrels: comparing the genetic composition of morphotypes of the indo-pacific sponge Xestospongia testudinaria.

Swierts T, Peijnenburg KT, de Leeuw C, Cleary DF, Hörnlein C, Setiawan E, Wörheide G, Erpenbeck D, de Voogd NJ.

PLoS One. 2013 Sep 12;8(9):e74396. doi: 10.1371/journal.pone.0074396. eCollection 2013.

46.

Identification and first insights into the structure and biosynthesis of chitin from the freshwater sponge Spongilla lacustris.

Ehrlich H, Kaluzhnaya OV, Brunner E, Tsurkan MV, Ereskovsky A, Ilan M, Tabachnick KR, Bazhenov VV, Paasch S, Kammer M, Born R, Stelling A, Galli R, Belikov S, Petrova OV, Sivkov VV, Vyalikh D, Hunoldt S, Wörheide G.

J Struct Biol. 2013 Sep;183(3):474-483. doi: 10.1016/j.jsb.2013.06.015. Epub 2013 Jul 4.

PMID:
23831449
47.

First report on chitinous holdfast in sponges (Porifera).

Ehrlich H, Kaluzhnaya OV, Tsurkan MV, Ereskovsky A, Tabachnick KR, Ilan M, Stelling A, Galli R, Petrova OV, Nekipelov SV, Sivkov VN, Vyalikh D, Born R, Behm T, Ehrlich A, Chernogor LI, Belikov S, Janussen D, Bazhenov VV, Wörheide G.

Proc Biol Sci. 2013 May 15;280(1762):20130339. doi: 10.1098/rspb.2013.0339. Print 2013 Jul 7.

48.

Managing and sharing the escalating number of sponge "unknowns": the SpongeMaps project.

Hooper JN, Hall KA, Ekins M, Erpenbeck D, Wörheide G, Jolley-Rogers G.

Integr Comp Biol. 2013 Sep;53(3):473-81. doi: 10.1093/icb/ict038. Epub 2013 May 7.

PMID:
23652200
49.

Novel scenarios of early animal evolution--is it time to rewrite textbooks?

Dohrmann M, Wörheide G.

Integr Comp Biol. 2013 Sep;53(3):503-11. doi: 10.1093/icb/ict008. Epub 2013 Mar 28. Review.

PMID:
23539635
50.

Analysis of the proteinaceous components of the organic matrix of calcitic sclerites from the soft coral Sinularia sp.

Rahman MA, Shinjo R, Oomori T, Wörheide G.

PLoS One. 2013;8(3):e58781. doi: 10.1371/journal.pone.0058781. Epub 2013 Mar 14. Erratum in: PLoS One. 2013;8(11). doi:10.1371/annotation/40505aa8-17cf-49c0-8d1d-1e28af8553cb.

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