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Best matches for Wählby C[au]:

In situ sequencing for RNA analysis in preserved tissue and cells. Ke R et al. Nat Methods. (2013)

Deep Learning in Image Cytometry: A Review. Gupta A et al. Cytometry A. (2019)

Deep Fish. Ishaq O et al. SLAS Discov. (2017)

Search results

Items: 46

1.

Deep Learning in Image Cytometry: A Review.

Gupta A, Harrison PJ, Wieslander H, Pielawski N, Kartasalo K, Partel G, Solorzano L, Suveer A, Klemm AH, Spjuth O, Sintorn IM, Wählby C.

Cytometry A. 2019 Apr;95(4):366-380. doi: 10.1002/cyto.a.23701. Epub 2018 Dec 19. Review.

2.

Multiplexed fluorescence microscopy reveals heterogeneity among stromal cells in mouse bone marrow sections.

Holzwarth K, Köhler R, Philipsen L, Tokoyoda K, Ladyhina V, Wählby C, Niesner RA, Hauser AE.

Cytometry A. 2018 Jul;93(9):876-888. doi: 10.1002/cyto.a.23526. Epub 2018 Aug 14.

3.

Image-Based Detection of Patient-Specific Drug-Induced Cell-Cycle Effects in Glioblastoma.

Matuszewski DJ, Wählby C, Krona C, Nelander S, Sintorn IM.

SLAS Discov. 2018 Dec;23(10):1030-1039. doi: 10.1177/2472555218791414. Epub 2018 Aug 3.

PMID:
30074852
4.

Differential Neuroprotective Effects of Interleukin-1 Receptor Antagonist on Spinal Cord Neurons after Excitotoxic Injury.

Schizas N, Perry S, Andersson B, Wählby C, Kullander K, Hailer NP.

Neuroimmunomodulation. 2017;24(4-5):220-230. doi: 10.1159/000484607. Epub 2018 Jan 26.

PMID:
29393213
5.

Human Immunodeficiency Virus-Infected Women Have High Numbers of CD103-CD8+ T Cells Residing Close to the Basal Membrane of the Ectocervical Epithelium.

Gibbs A, Buggert M, Edfeldt G, Ranefall P, Introini A, Cheuk S, Martini E, Eidsmo L, Ball TB, Kimani J, Kaul R, Karlsson AC, Wählby C, Broliden K, Tjernlund A.

J Infect Dis. 2018 Jul 2;218(3):453-465. doi: 10.1093/infdis/jix661.

PMID:
29272532
6.

A short feature vector for image matching: The Log-Polar Magnitude feature descriptor.

Matuszewski DJ, Hast A, Wählby C, Sintorn IM.

PLoS One. 2017 Nov 30;12(11):e0188496. doi: 10.1371/journal.pone.0188496. eCollection 2017.

7.

A comprehensive structural, biochemical and biological profiling of the human NUDIX hydrolase family.

Carreras-Puigvert J, Zitnik M, Jemth AS, Carter M, Unterlass JE, Hallström B, Loseva O, Karem Z, Calderón-Montaño JM, Lindskog C, Edqvist PH, Matuszewski DJ, Ait Blal H, Berntsson RPA, Häggblad M, Martens U, Studham M, Lundgren B, Wählby C, Sonnhammer ELL, Lundberg E, Stenmark P, Zupan B, Helleday T.

Nat Commun. 2017 Nov 16;8(1):1541. doi: 10.1038/s41467-017-01642-w.

8.

Quantitative image analysis of protein expression and colocalisation in skin sections.

Zhang H, Ericsson M, Virtanen M, Weström S, Wählby C, Vahlquist A, Törmä H.

Exp Dermatol. 2018 Feb;27(2):196-199. doi: 10.1111/exd.13457. Epub 2018 Jan 9.

PMID:
29094393
9.

Quantitative high-content/high-throughput microscopy analysis of lipid droplets in subject-specific adipogenesis models.

Bombrun M, Gao H, Ranefall P, Mejhert N, Arner P, Wählby C.

Cytometry A. 2017 Nov;91(11):1068-1077. doi: 10.1002/cyto.a.23265. Epub 2017 Oct 14.

10.

Automated Training of Deep Convolutional Neural Networks for Cell Segmentation.

Sadanandan SK, Ranefall P, Le Guyader S, Wählby C.

Sci Rep. 2017 Aug 10;7(1):7860. doi: 10.1038/s41598-017-07599-6.

11.

Objective automated quantification of fluorescence signal in histological sections of rat lens.

Talebizadeh N, Hagström NZ, Yu Z, Kronschläger M, Söderberg P, Wählby C.

Cytometry A. 2017 Aug;91(8):815-821. doi: 10.1002/cyto.a.23131. Epub 2017 May 11.

12.

Deep Fish.

Ishaq O, Sadanandan SK, Wählby C.

SLAS Discov. 2017 Jan;22(1):102-107. doi: 10.1177/1087057116667894. Epub 2016 Sep 26.

PMID:
27613194
13.

The quest for multiplexed spatially resolved transcriptional profiling.

Wählby C.

Nat Methods. 2016 Jul 28;13(8):623-4. doi: 10.1038/nmeth.3924. No abstract available.

PMID:
27467724
14.

PopulationProfiler: A Tool for Population Analysis and Visualization of Image-Based Cell Screening Data.

Matuszewski DJ, Wählby C, Puigvert JC, Sintorn IM.

PLoS One. 2016 Mar 17;11(3):e0151554. doi: 10.1371/journal.pone.0151554. eCollection 2016.

15.

Global gray-level thresholding based on object size.

Ranefall P, Wählby C.

Cytometry A. 2016 Apr;89(4):385-90. doi: 10.1002/cyto.a.22806. Epub 2016 Jan 22.

16.

Compaction of rolling circle amplification products increases signal integrity and signal-to-noise ratio.

Clausson CM, Arngården L, Ishaq O, Klaesson A, Kühnemund M, Grannas K, Koos B, Qian X, Ranefall P, Krzywkowski T, Brismar H, Nilsson M, Wählby C, Söderberg O.

Sci Rep. 2015 Jul 23;5:12317. doi: 10.1038/srep12317.

17.

Next-generation pathology--surveillance of tumor microecology.

Koos B, Kamali-Moghaddam M, David L, Sobrinho-Simões M, Dimberg A, Nilsson M, Wählby C, Söderberg O.

J Mol Biol. 2015 Jun 5;427(11):2013-22. doi: 10.1016/j.jmb.2015.02.017. Epub 2015 Feb 26. Review.

18.

High- and low-throughput scoring of fat mass and body fat distribution in C. elegans.

Wählby C, Conery AL, Bray MA, Kamentsky L, Larkins-Ford J, Sokolnicki KL, Veneskey M, Michaels K, Carpenter AE, O'Rourke EJ.

Methods. 2014 Aug 1;68(3):492-9. doi: 10.1016/j.ymeth.2014.04.017. Epub 2014 Apr 28.

19.

AUTOMATED QUANTIFICATION OF ZEBRAFISH TAIL DEFORMATION FOR HIGH-THROUGHPUT DRUG SCREENING.

Ishaq O, Negri J, Bray MA, Pacureanu A, Peterson RT, Wählby C.

Proc IEEE Int Symp Biomed Imaging. 2013:902-905.

20.

Automated analysis of dynamic behavior of single cells in picoliter droplets.

Khorshidi MA, Rajeswari PK, Wählby C, Joensson HN, Andersson Svahn H.

Lab Chip. 2014 Mar 7;14(5):931-7. doi: 10.1039/c3lc51136g.

PMID:
24385254
21.

In situ sequencing for RNA analysis in preserved tissue and cells.

Ke R, Mignardi M, Pacureanu A, Svedlund J, Botling J, Wählby C, Nilsson M.

Nat Methods. 2013 Sep;10(9):857-60. doi: 10.1038/nmeth.2563. Epub 2013 Jul 14.

PMID:
23852452
22.

Automated classification of immunostaining patterns in breast tissue from the human protein atlas.

Swamidoss IN, Kårsnäs A, Uhlmann V, Ponnusamy P, Kampf C, Simonsson M, Wählby C, Strand R.

J Pathol Inform. 2013 Mar 30;4(Suppl):S14. doi: 10.4103/2153-3539.109881. Print 2013.

23.

Pseudomonas aeruginosa disrupts Caenorhabditis elegans iron homeostasis, causing a hypoxic response and death.

Kirienko NV, Kirienko DR, Larkins-Ford J, Wählby C, Ruvkun G, Ausubel FM.

Cell Host Microbe. 2013 Apr 17;13(4):406-16. doi: 10.1016/j.chom.2013.03.003.

24.

High-throughput hyperdimensional vertebrate phenotyping.

Pardo-Martin C, Allalou A, Medina J, Eimon PM, Wählby C, Fatih Yanik M.

Nat Commun. 2013;4:1467. doi: 10.1038/ncomms2475.

25.

Blind color decomposition of histological images.

Gavrilovic M, Azar JC, Lindblad J, Wahlby C, Bengtsson E, Busch C, Carlbom IB.

IEEE Trans Med Imaging. 2013 Jun;32(6):983-94. doi: 10.1109/TMI.2013.2239655. Epub 2013 Jan 11.

PMID:
23322760
26.

Non-random mtDNA segregation patterns indicate a metastable heteroplasmic segregation unit in m.3243A>G cybrid cells.

Raap AK, Jahangir Tafrechi RS, van de Rijke FM, Pyle A, Wählby C, Szuhai K, Ravelli RB, de Coo RF, Rajasimha HK, Nilsson M, Chinnery PF, Samuels DC, Janssen GM.

PLoS One. 2012;7(12):e52080. doi: 10.1371/journal.pone.0052080. Epub 2012 Dec 18.

27.

An image analysis toolbox for high-throughput C. elegans assays.

Wählby C, Kamentsky L, Liu ZH, Riklin-Raviv T, Conery AL, O'Rourke EJ, Sokolnicki KL, Visvikis O, Ljosa V, Irazoqui JE, Golland P, Ruvkun G, Ausubel FM, Carpenter AE.

Nat Methods. 2012 Apr 22;9(7):714-6. doi: 10.1038/nmeth.1984.

28.

Fully automated cellular-resolution vertebrate screening platform with parallel animal processing.

Chang TY, Pardo-Martin C, Allalou A, Wählby C, Yanik MF.

Lab Chip. 2012 Feb 21;12(4):711-6. doi: 10.1039/c1lc20849g. Epub 2011 Dec 8.

29.

Increasing the dynamic range of in situ PLA.

Clausson CM, Allalou A, Weibrecht I, Mahmoudi S, Farnebo M, Landegren U, Wählby C, Söderberg O.

Nat Methods. 2011 Oct 28;8(11):892-3. doi: 10.1038/nmeth.1743. No abstract available.

PMID:
22036742
30.

Visualising individual sequence-specific protein-DNA interactions in situ.

Weibrecht I, Gavrilovic M, Lindbom L, Landegren U, Wählby C, Söderberg O.

N Biotechnol. 2012 Jun 15;29(5):589-98. doi: 10.1016/j.nbt.2011.08.002. Epub 2011 Aug 31.

PMID:
21906700
31.

Automated classification of multicolored rolling circle products in dual-channel wide-field fluorescence microscopy.

Gavrilovic M, Weibrecht I, Conze T, Söderberg O, Wählby C.

Cytometry A. 2011 Jul;79(7):518-27. doi: 10.1002/cyto.a.21087. Epub 2011 Jun 10.

32.

RESOLVING CLUSTERED WORMS VIA PROBABILISTIC SHAPE MODELS.

Wählby C, Riklin-Raviv T, Ljosa V, Conery AL, Golland P, Ausubel FM, Carpenter AE.

Proc IEEE Int Symp Biomed Imaging. 2010 Jun 21;2010(14-17 April 2010):552-555.

33.

Morphology-guided graph search for untangling objects: C. elegans analysis.

Raviv TR, Ljosa V, Conery AL, Ausubel FM, Carpenter AE, Golland P, Wählby C.

Med Image Comput Comput Assist Interv. 2010;13(Pt 3):634-41.

34.

Bright-field microscopy visualization of proteins and protein complexes by in situ proximity ligation with peroxidase detection.

Zieba A, Wählby C, Hjelm F, Jordan L, Berg J, Landegren U, Pardali K.

Clin Chem. 2010 Jan;56(1):99-110. doi: 10.1373/clinchem.2009.134452. Epub 2009 Nov 19.

35.

Robust signal detection in 3D fluorescence microscopy.

Allalou A, Pinidiyaarachchi A, Wählby C.

Cytometry A. 2010 Jan;77(1):86-96. doi: 10.1002/cyto.a.20795.

36.

Quantification of colocalization and cross-talk based on spectral angles.

Gavrilovic M, Wählby C.

J Microsc. 2009 Jun;234(3):311-24. doi: 10.1111/j.1365-2818.2009.03170.x.

37.

A single molecule array for digital targeted molecular analyses.

Göransson J, Wählby C, Isaksson M, Howell WM, Jarvius J, Nilsson M.

Nucleic Acids Res. 2009 Jan;37(1):e7. doi: 10.1093/nar/gkn921. Epub 2008 Nov 25.

38.

A detailed analysis of 3D subcellular signal localization.

Pinidiyaarachchi A, Zieba A, Allalou A, Pardali K, Wählby C.

Cytometry A. 2009 Apr;75(4):319-28. doi: 10.1002/cyto.a.20663.

39.

BlobFinder, a tool for fluorescence microscopy image cytometry.

Allalou A, Wählby C.

Comput Methods Programs Biomed. 2009 Apr;94(1):58-65. doi: 10.1016/j.cmpb.2008.08.006. Epub 2008 Oct 23.

PMID:
18950895
40.

Single-cell A3243G mitochondrial DNA mutation load assays for segregation analysis.

Jahangir Tafrechi RS, van de Rijke FM, Allallou A, Larsson C, Sloos WC, van de Sande M, Wählby C, Janssen GM, Raap AK.

J Histochem Cytochem. 2007 Nov;55(11):1159-66. Epub 2007 Aug 6.

41.

In situ detection of phosphorylated platelet-derived growth factor receptor beta using a generalized proximity ligation method.

Jarvius M, Paulsson J, Weibrecht I, Leuchowius KJ, Andersson AC, Wählby C, Gullberg M, Botling J, Sjöblom T, Markova B, Ostman A, Landegren U, Söderberg O.

Mol Cell Proteomics. 2007 Sep;6(9):1500-9. Epub 2007 Jun 12.

42.

Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections.

Wählby C, Sintorn IM, Erlandsson F, Borgefors G, Bengtsson E.

J Microsc. 2004 Jul;215(Pt 1):67-76.

43.

Image analysis for automatic segmentation of cytoplasms and classification of Rac1 activation.

Lindblad J, Wählby C, Bengtsson E, Zaltsman A.

Cytometry A. 2004 Jan;57(1):22-33.

44.

Abnormal expression pattern of cyclin E in tumour cells.

Erlandsson F, Wählby C, Ekholm-Reed S, Hellström AC, Bengtsson E, Zetterberg A.

Int J Cancer. 2003 Apr 10;104(3):369-75.

45.

Algorithms for cytoplasm segmentation of fluorescence labelled cells.

Wählby C, Lindblad J, Vondrus M, Bengtsson E, Björkesten L.

Anal Cell Pathol. 2002;24(2-3):101-11.

46.

Sequential immunofluorescence staining and image analysis for detection of large numbers of antigens in individual cell nuclei.

Wählby C, Erlandsson F, Bengtsson E, Zetterberg A.

Cytometry. 2002 Jan 1;47(1):32-41.

PMID:
11774347

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