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Items: 1 to 50 of 92

1.

Simple high-resolution NMR spectroscopy as a tool in molecular biology.

Mureddu L, Vuister GW.

FEBS J. 2019 Jun;286(11):2035-2042. doi: 10.1111/febs.14771. Epub 2019 Feb 14.

2.

Sin3A recruits Tet1 to the PAH1 domain via a highly conserved Sin3-Interaction Domain.

Chandru A, Bate N, Vuister GW, Cowley SM.

Sci Rep. 2018 Oct 2;8(1):14689. doi: 10.1038/s41598-018-32942-w.

3.

The Structural Basis of Calcium-Dependent Inactivation of the Transient Receptor Potential Vanilloid 5 Channel.

Bokhovchuk FM, Bate N, Kovalevskaya NV, Goult BT, Spronk CAEM, Vuister GW.

Biochemistry. 2018 May 8;57(18):2623-2635. doi: 10.1021/acs.biochem.7b01287. Epub 2018 Apr 20.

PMID:
29584409
4.

A Novel Mechanism for Calmodulin-Dependent Inactivation of Transient Receptor Potential Vanilloid 6.

Bate N, Caves RE, Skinner SP, Goult BT, Basran J, Mitcheson JS, Vuister GW.

Biochemistry. 2018 May 8;57(18):2611-2622. doi: 10.1021/acs.biochem.7b01286. Epub 2018 Apr 13.

PMID:
29505720
5.

Erratum to: CcpNmr AnalysisAssign: a flexible platform for integrated NMR analysis.

Skinner SP, Fogh RH, Boucher W, Ragan TJ, Mureddu LG, Vuister GW.

J Biomol NMR. 2017 Apr;67(4):321. doi: 10.1007/s10858-017-0102-0. No abstract available.

PMID:
28421403
6.

CcpNmr AnalysisAssign: a flexible platform for integrated NMR analysis.

Skinner SP, Fogh RH, Boucher W, Ragan TJ, Mureddu LG, Vuister GW.

J Biomol NMR. 2016 Oct;66(2):111-124. Epub 2016 Sep 23. Erratum in: J Biomol NMR. 2017 Apr;67(4):321.

7.

The second round of Critical Assessment of Automated Structure Determination of Proteins by NMR: CASD-NMR-2013.

Rosato A, Vranken W, Fogh RH, Ragan TJ, Tejero R, Pederson K, Lee HW, Prestegard JH, Yee A, Wu B, Lemak A, Houliston S, Arrowsmith CH, Kennedy M, Acton TB, Xiao R, Liu G, Montelione GT, Vuister GW.

J Biomol NMR. 2015 Aug;62(4):413-24. doi: 10.1007/s10858-015-9953-4. Epub 2015 Jun 14.

8.

NMR Exchange Format: a unified and open standard for representation of NMR restraint data.

Gutmanas A, Adams PD, Bardiaux B, Berman HM, Case DA, Fogh RH, Güntert P, Hendrickx PM, Herrmann T, Kleywegt GJ, Kobayashi N, Lange OF, Markley JL, Montelione GT, Nilges M, Ragan TJ, Schwieters CD, Tejero R, Ulrich EL, Velankar S, Vranken WF, Wedell JR, Westbrook J, Wishart DS, Vuister GW.

Nat Struct Mol Biol. 2015 Jun;22(6):433-4. doi: 10.1038/nsmb.3041. No abstract available.

9.

Analysis of the structural quality of the CASD-NMR 2013 entries.

Ragan TJ, Fogh RH, Tejero R, Vranken W, Montelione GT, Rosato A, Vuister GW.

J Biomol NMR. 2015 Aug;62(4):527-40. doi: 10.1007/s10858-015-9949-0. Epub 2015 Jun 3.

10.

Structure calculation, refinement and validation using CcpNmr Analysis.

Skinner SP, Goult BT, Fogh RH, Boucher W, Stevens TJ, Laue ED, Vuister GW.

Acta Crystallogr D Biol Crystallogr. 2015 Jan 1;71(Pt 1):154-61. doi: 10.1107/S1399004714026662. Epub 2015 Jan 1.

11.

NMR-based modeling and refinement of protein 3D structures.

Vranken WF, Vuister GW, Bonvin AM.

Methods Mol Biol. 2015;1215:351-80. doi: 10.1007/978-1-4939-1465-4_16.

PMID:
25330971
12.

Sulfonylurea receptors regulate the channel pore in ATP-sensitive potassium channels via an intersubunit salt bridge.

Lodwick D, Rainbow RD, Rubaiy HN, Al Johi M, Vuister GW, Norman RI.

Biochem J. 2014 Dec 15;464(3):343-54. doi: 10.1042/BJ20140273.

PMID:
25236767
13.

Recommendations of the wwPDB NMR Validation Task Force.

Montelione GT, Nilges M, Bax A, Güntert P, Herrmann T, Richardson JS, Schwieters CD, Vranken WF, Vuister GW, Wishart DS, Berman HM, Kleywegt GJ, Markley JL.

Structure. 2013 Sep 3;21(9):1563-70. doi: 10.1016/j.str.2013.07.021.

14.

An overview of tools for the validation of protein NMR structures.

Vuister GW, Fogh RH, Hendrickx PM, Doreleijers JF, Gutmanas A.

J Biomol NMR. 2014 Apr;58(4):259-85. doi: 10.1007/s10858-013-9750-x. Epub 2013 Jul 23. Review.

PMID:
23877928
15.

Structural analysis of calmodulin binding to ion channels demonstrates the role of its plasticity in regulation.

Kovalevskaya NV, van de Waterbeemd M, Bokhovchuk FM, Bate N, Bindels RJ, Hoenderop JG, Vuister GW.

Pflugers Arch. 2013 Nov;465(11):1507-19. doi: 10.1007/s00424-013-1278-0. Epub 2013 Apr 23. Review.

PMID:
23609407
16.

Accurate prediction of the dynamical changes within the second PDZ domain of PTP1e.

Cilia E, Vuister GW, Lenaerts T.

PLoS Comput Biol. 2012;8(11):e1002794. doi: 10.1371/journal.pcbi.1002794. Epub 2012 Nov 29.

17.

CING: an integrated residue-based structure validation program suite.

Doreleijers JF, Sousa da Silva AW, Krieger E, Nabuurs SB, Spronk CA, Stevens TJ, Vranken WF, Vriend G, Vuister GW.

J Biomol NMR. 2012 Nov;54(3):267-83. doi: 10.1007/s10858-012-9669-7. Epub 2012 Sep 18.

18.

In support of the BMRB.

Markley JL, Akutsu H, Asakura T, Baldus M, Boelens R, Bonvin A, Kaptein R, Bax A, Bezsonova I, Gryk MR, Hoch JC, Korzhnev DM, Maciejewski MW, Case D, Chazin WJ, Cross TA, Dames S, Kessler H, Lange O, Madl T, Reif B, Sattler M, Eliezer D, Fersht A, Forman-Kay J, Kay LE, Fraser J, Gross J, Kortemme T, Sali A, Fujiwara T, Gardner K, Luo X, Rizo-Rey J, Rosen M, Gil RR, Ho C, Rule G, Gronenborn AM, Ishima R, Klein-Seetharaman J, Tang P, van der Wel P, Xu Y, Grzesiek S, Hiller S, Seelig J, Laue ED, Mott H, Nietlispach D, Barsukov I, Lian LY, Middleton D, Blumenschein T, Moore G, Campbell I, Schnell J, Vakonakis IJ, Watts A, Conte MR, Mason J, Pfuhl M, Sanderson MR, Craven J, Williamson M, Dominguez C, Roberts G, Günther U, Overduin M, Werner J, Williamson P, Blindauer C, Crump M, Driscoll P, Frenkiel T, Golovanov A, Matthews S, Parkinson J, Uhrin D, Williams M, Neuhaus D, Oschkinat H, Ramos A, Shaw DE, Steinbeck C, Vendruscolo M, Vuister GW, Walters KJ, Weinstein H, Wüthrich K, Yokoyama S.

Nat Struct Mol Biol. 2012 Sep;19(9):854-60. doi: 10.1038/nsmb.2371. No abstract available.

PMID:
22955930
19.

NMR structure note: solution structure of Ca²⁺ binding domain 2B of the third isoform of the Na⁺/Ca²⁺ exchanger.

Breukels V, Touw WG, Vuister GW.

J Biomol NMR. 2012 Sep;54(1):115-21. doi: 10.1007/s10858-012-9654-1. Epub 2012 Jul 18. No abstract available.

PMID:
22806131
20.

Structural and dynamic aspects of Ca2+ and Mg2+ binding of the regulatory domains of the Na+/Ca2+ exchanger.

Breukels V, Touw WG, Vuister GW.

Biochem Soc Trans. 2012 Apr;40(2):409-14. doi: 10.1042/BST20110742. Review.

PMID:
22435821
21.

The TRPV5/6 calcium channels contain multiple calmodulin binding sites with differential binding properties.

Kovalevskaya NV, Bokhovchuk FM, Vuister GW.

J Struct Funct Genomics. 2012 Jun;13(2):91-100. doi: 10.1007/s10969-012-9128-4. Epub 2012 Feb 22.

22.

Overlapping transport and chaperone-binding functions within a bacterial twin-arginine signal peptide.

Grahl S, Maillard J, Spronk CA, Vuister GW, Sargent F.

Mol Microbiol. 2012 Mar;83(6):1254-67. doi: 10.1111/j.1365-2958.2012.08005.x. Epub 2012 Feb 27.

23.

Blind testing of routine, fully automated determination of protein structures from NMR data.

Rosato A, Aramini JM, Arrowsmith C, Bagaria A, Baker D, Cavalli A, Doreleijers JF, Eletsky A, Giachetti A, Guerry P, Gutmanas A, Güntert P, He Y, Herrmann T, Huang YJ, Jaravine V, Jonker HR, Kennedy MA, Lange OF, Liu G, Malliavin TE, Mani R, Mao B, Montelione GT, Nilges M, Rossi P, van der Schot G, Schwalbe H, Szyperski TA, Vendruscolo M, Vernon R, Vranken WF, Vries Sd, Vuister GW, Wu B, Yang Y, Bonvin AM.

Structure. 2012 Feb 8;20(2):227-36. doi: 10.1016/j.str.2012.01.002.

24.

Gradient-enhanced heteronuclear correlation spectroscopy: theory and experimental aspects. 1992.

Ruiz-Cabello J, Vuister GW, Moonen CT, van Gelderen P, Cohen JS, van Zijl PC.

J Magn Reson. 2011 Dec;213(2):446-66. doi: 10.1016/j.jmr.2011.09.006. No abstract available.

PMID:
22152362
25.

NRG-CING: integrated validation reports of remediated experimental biomolecular NMR data and coordinates in wwPDB.

Doreleijers JF, Vranken WF, Schulte C, Markley JL, Ulrich EL, Vriend G, Vuister GW.

Nucleic Acids Res. 2012 Jan;40(Database issue):D519-24. doi: 10.1093/nar/gkr1134. Epub 2011 Dec 1.

26.

The second Ca(2+)-binding domain of NCX1 binds Mg2+ with high affinity.

Breukels V, Konijnenberg A, Nabuurs SM, Touw WG, Vuister GW.

Biochemistry. 2011 Oct 18;50(41):8804-12. doi: 10.1021/bi201134u. Epub 2011 Sep 22.

PMID:
21928827
27.

Expression and purification of the C-terminal fragments of TRPV5/6 channels.

Kovalevskaya NV, Schilderink N, Vuister GW.

Protein Expr Purif. 2011 Nov;80(1):28-33. doi: 10.1016/j.pep.2011.05.021. Epub 2011 Jun 2.

PMID:
21664972
28.

Molecular mechanisms of calmodulin action on TRPV5 and modulation by parathyroid hormone.

de Groot T, Kovalevskaya NV, Verkaart S, Schilderink N, Felici M, van der Hagen EA, Bindels RJ, Vuister GW, Hoenderop JG.

Mol Cell Biol. 2011 Jul;31(14):2845-53. doi: 10.1128/MCB.01319-10. Epub 2011 May 16.

29.

Overview on the use of NMR to examine protein structure.

Breukels V, Konijnenberg A, Nabuurs SM, Doreleijers JF, Kovalevskaya NV, Vuister GW.

Curr Protoc Protein Sci. 2011 Apr;Chapter 17:Unit17.5. doi: 10.1002/0471140864.ps1705s64.

PMID:
21488042
30.
31.

A cell-penetrating peptide derived from human lactoferrin with conformation-dependent uptake efficiency.

Duchardt F, Ruttekolk IR, Verdurmen WP, Lortat-Jacob H, Bürck J, Hufnagel H, Fischer R, van den Heuvel M, Löwik DW, Vuister GW, Ulrich A, de Waard M, Brock R.

J Biol Chem. 2009 Dec 25;284(52):36099-108. doi: 10.1074/jbc.M109.036426. Epub 2009 Oct 26.

32.

The NMR restraints grid at BMRB for 5,266 protein and nucleic acid PDB entries.

Doreleijers JF, Vranken WF, Schulte C, Lin J, Wedell JR, Penkett CJ, Vuister GW, Vriend G, Markley JL, Ulrich EL.

J Biomol NMR. 2009 Dec;45(4):389-96. doi: 10.1007/s10858-009-9378-z. Epub 2009 Oct 7.

33.

CASD-NMR: critical assessment of automated structure determination by NMR.

Rosato A, Bagaria A, Baker D, Bardiaux B, Cavalli A, Doreleijers JF, Giachetti A, Guerry P, Güntert P, Herrmann T, Huang YJ, Jonker HR, Mao B, Malliavin TE, Montelione GT, Nilges M, Raman S, van der Schot G, Vranken WF, Vuister GW, Bonvin AM.

Nat Methods. 2009 Sep;6(9):625-6. doi: 10.1038/nmeth0909-625. No abstract available.

34.

Ca2+ regulation in the Na+/Ca2+ exchanger features a dual electrostatic switch mechanism.

Hilge M, Aelen J, Foarce A, Perrakis A, Vuister GW.

Proc Natl Acad Sci U S A. 2009 Aug 25;106(34):14333-8. doi: 10.1073/pnas.0902171106. Epub 2009 Aug 10.

35.

Structure and dynamics of Ca2+-binding domain 1 of the Na+/Ca2+ exchanger in the presence and in the absence of Ca2+.

Johnson E, Bruschweiler-Li L, Showalter SA, Vuister GW, Zhang F, Brüschweiler R.

J Mol Biol. 2008 Mar 28;377(3):945-55. doi: 10.1016/j.jmb.2008.01.046. Epub 2008 Jan 30.

36.

An allosteric intramolecular PDZ-PDZ interaction modulates PTP-BL PDZ2 binding specificity.

van den Berk LC, Landi E, Walma T, Vuister GW, Dente L, Hendriks WJ.

Biochemistry. 2007 Nov 27;46(47):13629-37. Epub 2007 Nov 3.

PMID:
17979300
37.

Structural diversity in twin-arginine signal peptide-binding proteins.

Maillard J, Spronk CA, Buchanan G, Lyall V, Richardson DJ, Palmer T, Vuister GW, Sargent F.

Proc Natl Acad Sci U S A. 2007 Oct 2;104(40):15641-6. Epub 2007 Sep 27.

38.

Structural basis for Ca2+ regulation in the Na+/Ca2+ exchanger.

Hilge M, Aelen J, Perrakis A, Vuister GW.

Ann N Y Acad Sci. 2007 Mar;1099:7-15. Epub 2007 Mar 8. Review.

PMID:
17347334
39.

A PDZ domain recapitulates a unifying mechanism for protein folding.

Gianni S, Geierhaas CD, Calosci N, Jemth P, Vuister GW, Travaglini-Allocatelli C, Vendruscolo M, Brunori M.

Proc Natl Acad Sci U S A. 2007 Jan 2;104(1):128-33. Epub 2006 Dec 19.

40.

Demonstration of long-range interactions in a PDZ domain by NMR, kinetics, and protein engineering.

Gianni S, Walma T, Arcovito A, Calosci N, Bellelli A, Engström A, Travaglini-Allocatelli C, Brunori M, Jemth P, Vuister GW.

Structure. 2006 Dec;14(12):1801-9.

41.

Ca2+ regulation in the Na+/Ca2+ exchanger involves two markedly different Ca2+ sensors.

Hilge M, Aelen J, Vuister GW.

Mol Cell. 2006 Apr 7;22(1):15-25.

42.

CEESY: characterizing the conformation of unobservable protein states.

van Ingen H, Vuister GW, Wijmenga S, Tessari M.

J Am Chem Soc. 2006 Mar 29;128(12):3856-7.

PMID:
16551062
43.

Role of structural and dynamical plasticity in Sin3: the free PAH2 domain is a folded module in mSin3B.

van Ingen H, Baltussen MA, Aelen J, Vuister GW.

J Mol Biol. 2006 Apr 28;358(2):485-97. Epub 2006 Feb 13.

PMID:
16519900
44.

Traditional biomolecular structure determination by NMR spectroscopy allows for major errors.

Nabuurs SB, Spronk CA, Vuister GW, Vriend G.

PLoS Comput Biol. 2006 Feb;2(2):e9. Epub 2006 Feb 3.

45.

Definition of a new information-based per-residue quality parameter.

Nabuurs SB, Krieger E, Spronk CA, Nederveen AJ, Vriend G, Vuister GW.

J Biomol NMR. 2005 Oct;33(2):123-34.

PMID:
16258830
46.

Solution structure of the second PDZ domain of the neuronal adaptor X11alpha and its interaction with the C-terminal peptide of the human copper chaperone for superoxide dismutase.

Duquesne AE, Ruijter Md, Brouwer J, Drijfhout JW, Nabuurs SB, Spronk CA, Vuister GW, Ubbink M, Canters GW.

J Biomol NMR. 2005 Jul;32(3):209-18.

PMID:
16132821
47.

Kinetic folding mechanism of PDZ2 from PTP-BL.

Gianni S, Calosci N, Aelen JM, Vuister GW, Brunori M, Travaglini-Allocatelli C.

Protein Eng Des Sel. 2005 Aug;18(8):389-95. Epub 2005 Jul 25.

PMID:
16043447
48.

The interaction of PTP-BL PDZ domains with RIL: an enigmatic role for the RIL LIM domain.

van den Berk LC, van Ham MA, te Lindert MM, Walma T, Aelen J, Vuister GW, Hendriks WJ.

Mol Biol Rep. 2004 Dec;31(4):203-15.

PMID:
15663004
49.
50.

DRESS: a database of REfined solution NMR structures.

Nabuurs SB, Nederveen AJ, Vranken W, Doreleijers JF, Bonvin AM, Vuister GW, Vriend G, Spronk CA.

Proteins. 2004 May 15;55(3):483-6.

PMID:
15103611

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