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A Promiscuous CYP706A3 Reduces Terpene Volatile Emission from Arabidopsis Flowers, Affecting Florivores and the Floral Microbiome.

Boachon B, Burdloff Y, Ruan JX, Rojo R, Junker RR, Vincent B, Nicolè F, Bringel F, Lesot A, Henry L, Bassard JE, Mathieu S, Allouche L, Kaplan I, Dudareva N, Vuilleumier S, Miesch L, André F, Navrot N, Chen XY, Werck D.

Plant Cell. 2019 Oct 18. pii: tpc.00320.2019. doi: 10.1105/tpc.19.00320. [Epub ahead of print]


Methylotrophs and Methylotroph Populations for Chloromethane Degradation.

Bringel F, Besaury L, Amato P, Kröber E, Kolb S, Keppler F, Vuilleumier S, Nadalig T.

Curr Issues Mol Biol. 2019 Jun 5;33:149-172. doi: 10.21775/cimb.033.149. [Epub ahead of print]


Natural Chlordecone Degradation Revealed by Numerous Transformation Products Characterized in Key French West Indies Environmental Compartments.

Chevallier ML, Della-Negra O, Chaussonnerie S, Barbance A, Muselet D, Lagarde F, Darii E, Ugarte E, Lescop E, Fonknechten N, Weissenbach J, Woignier T, Gallard JF, Vuilleumier S, Imfeld G, Le Paslier D, Saaidi PL.

Environ Sci Technol. 2019 Jun 4;53(11):6133-6143. doi: 10.1021/acs.est.8b06305. Epub 2019 May 22.


Patients with severe slipped capital femoral epiphysis treated by the modified Dunn procedure have low rates of avascular necrosis, good outcomes, and little osteoarthritis at long-term follow-up.

Lerch TD, Vuilleumier S, Schmaranzer F, Ziebarth K, Steppacher SD, Tannast M, Siebenrock KA.

Bone Joint J. 2019 Apr;101-B(4):403-414. doi: 10.1302/0301-620X.101B4.BJJ-2018-1303.R1.


Functional Genes and Bacterial Communities During Organohalide Respiration of Chloroethenes in Microcosms of Multi-Contaminated Groundwater.

Hermon L, Hellal J, Denonfoux J, Vuilleumier S, Imfeld G, Urien C, Ferreira S, Joulian C.

Front Microbiol. 2019 Feb 12;10:89. doi: 10.3389/fmicb.2019.00089. eCollection 2019.


Individual stages of bacterial dichloromethane degradation mapped by carbon and chlorine stable isotope analysis.

Torgonskaya ML, Zyakun AM, Trotsenko YA, Laurinavichius KS, Kümmel S, Vuilleumier S, Richnow HH.

J Environ Sci (China). 2019 Apr;78:147-160. doi: 10.1016/j.jes.2018.09.008. Epub 2018 Sep 26.


Indication of spatially random occurrence of Chlamydia-like organisms in Bufo bufo tadpoles from ponds located in the Geneva metropolitan area.

Vajana E, Widmer I, Rochat E, Duruz S, Selmoni O, Vuilleumier S, Aeby S, Greub G, Joost S.

New Microbes New Infect. 2018 Nov 27;27:54-63. doi: 10.1016/j.nmni.2018.11.006. eCollection 2019 Jan.


Toward Integrative Bacterial Monitoring of Metolachlor Toxicity in Groundwater.

Imfeld G, Besaury L, Maucourt B, Donadello S, Baran N, Vuilleumier S.

Front Microbiol. 2018 Oct 16;9:2053. doi: 10.3389/fmicb.2018.02053. eCollection 2018.


Methanol consumption drives the bacterial chloromethane sink in a forest soil.

Chaignaud P, Morawe M, Besaury L, Kröber E, Vuilleumier S, Bringel F, Kolb S.

ISME J. 2018 Nov;12(11):2681-2693. doi: 10.1038/s41396-018-0228-4. Epub 2018 Jul 10.


Dichloromethane biodegradation in multi-contaminated groundwater: Insights from biomolecular and compound-specific isotope analyses.

Hermon L, Denonfoux J, Hellal J, Joulian C, Ferreira S, Vuilleumier S, Imfeld G.

Water Res. 2018 Oct 1;142:217-226. doi: 10.1016/j.watres.2018.05.057. Epub 2018 May 31.


Chloromethane formation and degradation in the fern phyllosphere.

Jaeger N, Besaury L, Röhling AN, Koch F, Delort AM, Gasc C, Greule M, Kolb S, Nadalig T, Peyret P, Vuilleumier S, Amato P, Bringel F, Keppler F.

Sci Total Environ. 2018 Sep 1;634:1278-1287. doi: 10.1016/j.scitotenv.2018.03.316. Epub 2018 Apr 18.


Chloromethane Degradation in Soils: A Combined Microbial and Two-Dimensional Stable Isotope Approach.

Jaeger N, Besaury L, Kröber E, Delort AM, Greule M, Lenhart K, Nadalig T, Vuilleumier S, Amato P, Kolb S, Bringel F, Keppler F.

J Environ Qual. 2018 Mar;47(2):254-262. doi: 10.2134/jeq2017.09.0358.


N-terminome and proteogenomic analysis of the Methylobacterium extorquens DM4 reference strain for dichloromethane utilization.

Bibi-Triki S, Husson G, Maucourt B, Vuilleumier S, Carapito C, Bringel F.

J Proteomics. 2018 May 15;179:131-139. doi: 10.1016/j.jprot.2018.03.012. Epub 2018 Mar 19.


Correlated production and consumption of chloromethane in the Arabidopsis thaliana phyllosphere.

Farhan Ul Haque M, Besaury L, Nadalig T, Bringel F, Mutterer J, Schaller H, Vuilleumier S.

Sci Rep. 2017 Dec 14;7(1):17589. doi: 10.1038/s41598-017-17421-y.


Metabolic Regulation: A Master Role for Ribulose-1,5-Bisphosphate in One-Carbon Assimilation.

Bringel F, Vuilleumier S.

Curr Biol. 2017 Oct 23;27(20):R1127-R1129. doi: 10.1016/j.cub.2017.09.003.


Genomic and Transcriptomic Analysis of Growth-Supporting Dehalogenation of Chlorinated Methanes in Methylobacterium.

Chaignaud P, Maucourt B, Weiman M, Alberti A, Kolb S, Cruveiller S, Vuilleumier S, Bringel F.

Front Microbiol. 2017 Sep 1;8:1600. doi: 10.3389/fmicb.2017.01600. eCollection 2017.


Draft Genome Sequences of Two Gammaproteobacterial Methanotrophs Isolated from Rice Ecosystems.

Frindte K, Kalyuzhnaya MG, Bringel F, Dunfield PF, Jetten MSM, Khmelenina VN, Klotz MG, Murrell JC, Op den Camp HJM, Sakai Y, Semrau JD, Shapiro N, DiSpirito AA, Stein LY, Svenning MM, Trotsenko YA, Vuilleumier S, Woyke T, Knief C.

Genome Announc. 2017 Aug 17;5(33). pii: e00526-17. doi: 10.1128/genomeA.00526-17.


Genome Sequence of the Dichloromethane-Degrading Bacterium Hyphomicrobium sp. Strain GJ21.

Bringel F, Postema CP, Mangenot S, Bibi-Triki S, Chaignaud P, Farhan Ul Haque M, Gruffaz C, Hermon L, Louhichi Y, Maucourt B, Muller EEL, Nadalig T, Lajus A, Rouy Z, Médigue C, Barbe V, Janssen DB, Vuilleumier S.

Genome Announc. 2017 Jul 27;5(30). pii: e00622-17. doi: 10.1128/genomeA.00622-17.


Host shift and cospeciation rate estimation from co-phylogenies.

Alcala N, Jenkins T, Christe P, Vuilleumier S.

Ecol Lett. 2017 Aug;20(8):1014-1024. doi: 10.1111/ele.12799. Epub 2017 Jun 29.


Hopanoid-free Methylobacterium extorquens DM4 overproduces carotenoids and has widespread growth impairment.

Bradley AS, Swanson PK, Muller EE, Bringel F, Caroll SM, Pearson A, Vuilleumier S, Marx CJ.

PLoS One. 2017 Mar 20;12(3):e0173323. doi: 10.1371/journal.pone.0173323. eCollection 2017.


On the importance of skewed offspring distributions and background selection in virus population genetics.

Irwin KK, Laurent S, Matuszewski S, Vuilleumier S, Ormond L, Shim H, Bank C, Jensen JD.

Heredity (Edinb). 2016 Dec;117(6):393-399. doi: 10.1038/hdy.2016.58. Epub 2016 Sep 21. Review.


Transfer of a Catabolic Pathway for Chloromethane in Methylobacterium Strains Highlights Different Limitations for Growth with Chloromethane or with Dichloromethane.

Michener JK, Vuilleumier S, Bringel F, Marx CJ.

Front Microbiol. 2016 Jul 19;7:1116. doi: 10.3389/fmicb.2016.01116. eCollection 2016.


Methanobactin and the Link between Copper and Bacterial Methane Oxidation.

DiSpirito AA, Semrau JD, Murrell JC, Gallagher WH, Dennison C, Vuilleumier S.

Microbiol Mol Biol Rev. 2016 Mar 16;80(2):387-409. doi: 10.1128/MMBR.00058-15. Print 2016 Jun. Review.


Draft Genome Sequences of Gammaproteobacterial Methanotrophs Isolated from Marine Ecosystems.

Flynn JD, Hirayama H, Sakai Y, Dunfield PF, Klotz MG, Knief C, Op den Camp HJ, Jetten MS, Khmelenina VN, Trotsenko YA, Murrell JC, Semrau JD, Svenning MM, Stein LY, Kyrpides N, Shapiro N, Woyke T, Bringel F, Vuilleumier S, DiSpirito AA, Kalyuzhnaya MG.

Genome Announc. 2016 Jan 21;4(1). pii: e01629-15. doi: 10.1128/genomeA.01629-15.


The Genomic Signature of Population Reconnection Following Isolation: From Theory to HIV.

Alcala N, Jensen JD, Telenti A, Vuilleumier S.

G3 (Bethesda). 2015 Nov 6;6(1):107-20. doi: 10.1534/g3.115.024208.


Concomitant evaluation of atmospheric levels of polychlorinated biphenyls, organochlorine pesticides, and polycyclic aromatic hydrocarbons in Strasbourg (France) using pine needle passive samplers.

Al Dine EJ, Mokbel H, Elmoll A, Massemin S, Vuilleumier S, Toufaily J, Hanieh T, Millet M.

Environ Sci Pollut Res Int. 2015 Nov;22(22):17850-9. doi: 10.1007/s11356-015-5030-5. Epub 2015 Jul 12.


Draft Genome Sequence of the Moderately Halophilic Methanotroph Methylohalobius crimeensis Strain 10Ki.

Sharp CE, Smirnova AV, Kalyuzhnaya MG, Bringel F, Hirayama H, Jetten MS, Khmelenina VN, Klotz MG, Knief C, Kyrpides N, Op den Camp HJ, Reshetnikov AS, Sakai Y, Shapiro N, Trotsenko YA, Vuilleumier S, Woyke T, Dunfield PF.

Genome Announc. 2015 Jun 11;3(3). pii: e00644-15. doi: 10.1128/genomeA.00644-15.


Draft genomes of gammaproteobacterial methanotrophs isolated from terrestrial ecosystems.

Hamilton R, Kits KD, Ramonovskaya VA, Rozova ON, Yurimoto H, Iguchi H, Khmelenina VN, Sakai Y, Dunfield PF, Klotz MG, Knief C, Op den Camp HJ, Jetten MS, Bringel F, Vuilleumier S, Svenning MM, Shapiro N, Woyke T, Trotsenko YA, Stein LY, Kalyuzhnaya MG.

Genome Announc. 2015 Jun 4;3(3). pii: e00515-15. doi: 10.1128/genomeA.00515-15.


Genetic consequences of population expansions and contractions in the common hippopotamus (Hippopotamus amphibius) since the Late Pleistocene.

Stoffel C, Dufresnes C, Okello JB, Noirard C, Joly P, Nyakaana S, Muwanika VB, Alcala N, Vuilleumier S, Siegismund HR, Fumagalli L.

Mol Ecol. 2015 May;24(10):2507-20. doi: 10.1111/mec.13179. Epub 2015 Apr 22.


Degradation of chloroacetanilide herbicides and bacterial community composition in lab-scale wetlands.

Elsayed OF, Maillard E, Vuilleumier S, Millet M, Imfeld G.

Sci Total Environ. 2015 Jul 1;520:222-31. doi: 10.1016/j.scitotenv.2015.03.061. Epub 2015 Mar 25.


Contribution of recombination to the evolutionary history of HIV.

Vuilleumier S, Bonhoeffer S.

Curr Opin HIV AIDS. 2015 Mar;10(2):84-9. doi: 10.1097/COH.0000000000000137. Review.


Tetrachloromethane-Degrading Bacterial Enrichment Cultures and Isolates from a Contaminated Aquifer.

Penny C, Gruffaz C, Nadalig T, Cauchie HM, Vuilleumier S, Bringel F.

Microorganisms. 2015 Jul 2;3(3):327-43. doi: 10.3390/microorganisms3030327.


Effective use of a horizontally-transferred pathway for dichloromethane catabolism requires post-transfer refinement.

Michener JK, Camargo Neves AA, Vuilleumier S, Bringel F, Marx CJ.

Elife. 2014 Nov 24;3. doi: 10.7554/eLife.04279.


Probing the diversity of chloromethane-degrading bacteria by comparative genomics and isotopic fractionation.

Nadalig T, Greule M, Bringel F, Keppler F, Vuilleumier S.

Front Microbiol. 2014 Oct 15;5:523. doi: 10.3389/fmicb.2014.00523. eCollection 2014.


Turnover and accumulation of genetic diversity across large time-scale cycles of isolation and connection of populations.

Alcala N, Vuilleumier S.

Proc Biol Sci. 2014 Nov 7;281(1794):20141369. doi: 10.1098/rspb.2014.1369.


Bacterial communities in batch and continuous-flow wetlands treating the herbicide S-metolachlor.

Elsayed OF, Maillard E, Vuilleumier S, Imfeld G.

Sci Total Environ. 2014 Nov 15;499:327-35. doi: 10.1016/j.scitotenv.2014.08.048. Epub 2014 Sep 6.


The coming of age of microbial ecotoxicology: report on the first two meetings in France.

Ghiglione JF, Martin-Laurent F, Stachowski-Haberkorn S, Pesce S, Vuilleumier S.

Environ Sci Pollut Res Int. 2014 Dec;21(24):14241-5. doi: 10.1007/s11356-014-3390-x. Epub 2014 Aug 7. No abstract available.


Coexistence of specialist and generalist species is shaped by dispersal and environmental factors.

Büchi L, Vuilleumier S.

Am Nat. 2014 May;183(5):612-24. doi: 10.1086/675756. Epub 2014 Mar 28.


Phylogeny poorly predicts the utility of a challenging horizontally transferred gene in Methylobacterium strains.

Michener JK, Vuilleumier S, Bringel F, Marx CJ.

J Bacteriol. 2014 Jun;196(11):2101-7. doi: 10.1128/JB.00034-14. Epub 2014 Mar 28.


Genomic and transcriptomic analyses of the facultative methanotroph Methylocystis sp. strain SB2 grown on methane or ethanol.

Vorobev A, Jagadevan S, Jain S, Anantharaman K, Dick GJ, Vuilleumier S, Semrau JD.

Appl Environ Microbiol. 2014 May;80(10):3044-52. doi: 10.1128/AEM.00218-14. Epub 2014 Mar 7.


On the transition of genetic differentiation from isolation to panmixia: what we can learn from GST and D.

Alcala N, Goudet J, Vuilleumier S.

Theor Popul Biol. 2014 May;93:75-84. doi: 10.1016/j.tpb.2014.02.003. Epub 2014 Feb 19.


Highly efficient methane biocatalysis revealed in a methanotrophic bacterium.

Kalyuzhnaya MG, Yang S, Rozova ON, Smalley NE, Clubb J, Lamb A, Gowda GA, Raftery D, Fu Y, Bringel F, Vuilleumier S, Beck DA, Trotsenko YA, Khmelenina VN, Lidstrom ME.

Nat Commun. 2013;4:2785. doi: 10.1038/ncomms3785.


Using compound-specific isotope analysis to assess the degradation of chloroacetanilide herbicides in lab-scale wetlands.

Elsayed OF, Maillard E, Vuilleumier S, Nijenhuis I, Richnow HH, Imfeld G.

Chemosphere. 2014 Mar;99:89-95. doi: 10.1016/j.chemosphere.2013.10.027. Epub 2013 Nov 18.


Hydrogen and carbon isotope fractionation during degradation of chloromethane by methylotrophic bacteria.

Nadalig T, Greule M, Bringel F, Vuilleumier S, Keppler F.

Microbiologyopen. 2013 Dec;2(6):893-900. doi: 10.1002/mbo3.124. Epub 2013 Sep 8.


Meeting review. Uncovering the genetic basis of adaptive change: on the intersection of landscape genomics and theoretical population genetics.

Joost S, Vuilleumier S, Jensen JD, Schoville S, Leempoel K, Stucki S, Widmer I, Melodelima C, Rolland J, Manel S.

Mol Ecol. 2013 Jul;22(14):3659-65.


Fluorescence-based bacterial bioreporter for specific detection of methyl halide emissions in the environment.

Farhan Ul Haque M, Nadalig T, Bringel F, Schaller H, Vuilleumier S.

Appl Environ Microbiol. 2013 Nov;79(21):6561-7. doi: 10.1128/AEM.01738-13. Epub 2013 Aug 16.


Evolution of uni- and bifactorial sexual compatibility systems in fungi.

Nieuwenhuis BP, Billiard S, Vuilleumier S, Petit E, Hood ME, Giraud T.

Heredity (Edinb). 2013 Dec;111(6):445-55. doi: 10.1038/hdy.2013.67. Epub 2013 Jul 10. Review.


Draft Genome Sequence of Methylomicrobium buryatense Strain 5G, a Haloalkaline-Tolerant Methanotrophic Bacterium.

Khmelenina VN, Beck DA, Munk C, Davenport K, Daligault H, Erkkila T, Goodwin L, Gu W, Lo CC, Scholz M, Teshima H, Xu Y, Chain P, Bringel F, Vuilleumier S, Dispirito A, Dunfield P, Jetten MS, Klotz MG, Knief C, Murrell JC, Op den Camp HJ, Sakai Y, Semrau J, Svenning M, Stein LY, Trotsenko YA, Kalyuzhnaya MG.

Genome Announc. 2013 Jun 27;1(4). pii: e00053-13. doi: 10.1128/genomeA.00053-13.


Methanobactin and MmoD work in concert to act as the 'copper-switch' in methanotrophs.

Semrau JD, Jagadevan S, DiSpirito AA, Khalifa A, Scanlan J, Bergman BH, Freemeier BC, Baral BS, Bandow NL, Vorobev A, Haft DH, Vuilleumier S, Murrell JC.

Environ Microbiol. 2013 Nov;15(11):3077-86. doi: 10.1111/1462-2920.12150. Epub 2013 May 20.

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