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Items: 34

1.

MaMADS2 repression in banana fruits modifies hormone synthesis and signalling pathways prior to climacteric stage.

Yakir E, Zhangjun F, Sela N, Xu Y, Singh V, Dagar A, Joshi JR, Müller M, Munné-Bosch S, Giovannoni JJ, Vrebalov J, Friedman H.

BMC Plant Biol. 2018 Nov 6;18(1):267. doi: 10.1186/s12870-018-1480-5.

2.

The maize W22 genome provides a foundation for functional genomics and transposon biology.

Springer NM, Anderson SN, Andorf CM, Ahern KR, Bai F, Barad O, Barbazuk WB, Bass HW, Baruch K, Ben-Zvi G, Buckler ES, Bukowski R, Campbell MS, Cannon EKS, Chomet P, Dawe RK, Davenport R, Dooner HK, Du LH, Du C, Easterling KA, Gault C, Guan JC, Hunter CT, Jander G, Jiao Y, Koch KE, Kol G, Köllner TG, Kudo T, Li Q, Lu F, Mayfield-Jones D, Mei W, McCarty DR, Noshay JM, Portwood JL 2nd, Ronen G, Settles AM, Shem-Tov D, Shi J, Soifer I, Stein JC, Stitzer MC, Suzuki M, Vera DL, Vollbrecht E, Vrebalov JT, Ware D, Wei S, Wimalanathan K, Woodhouse MR, Xiong W, Brutnell TP.

Nat Genet. 2018 Sep;50(9):1282-1288. doi: 10.1038/s41588-018-0158-0. Epub 2018 Jul 30.

PMID:
30061736
3.

Ectopic expression of ORANGE promotes carotenoid accumulation and fruit development in tomato.

Yazdani M, Sun Z, Yuan H, Zeng S, Thannhauser TW, Vrebalov J, Ma Q, Xu Y, Fei Z, Van Eck J, Tian S, Tadmor Y, Giovannoni JJ, Li L.

Plant Biotechnol J. 2019 Jan;17(1):33-49. doi: 10.1111/pbi.12945. Epub 2018 May 31.

4.

Overexpression of the class D MADS-box gene Sl-AGL11 impacts fleshy tissue differentiation and structure in tomato fruits.

Huang B, Routaboul JM, Liu M, Deng W, Maza E, Mila I, Hu G, Zouine M, Frasse P, Vrebalov JT, Giovannoni JJ, Li Z, van der Rest B, Bouzayen M.

J Exp Bot. 2017 Oct 13;68(17):4869-4884. doi: 10.1093/jxb/erx303.

PMID:
28992179
5.

Gr and hp-1 tomato mutants unveil unprecedented interactions between arbuscular mycorrhizal symbiosis and fruit ripening.

Chialva M, Zouari I, Salvioli A, Novero M, Vrebalov J, Giovannoni JJ, Bonfante P.

Planta. 2016 Jul;244(1):155-65. doi: 10.1007/s00425-016-2491-9. Epub 2016 Mar 22.

6.

Banana MaMADS Transcription Factors Are Necessary for Fruit Ripening and Molecular Tools to Promote Shelf-Life and Food Security.

Elitzur T, Yakir E, Quansah L, Zhangjun F, Vrebalov J, Khayat E, Giovannoni JJ, Friedman H.

Plant Physiol. 2016 May;171(1):380-91. doi: 10.1104/pp.15.01866. Epub 2016 Mar 8.

7.

The pineapple AcMADS1 promoter confers high level expression in tomato and Arabidopsis flowering and fruiting tissues, but AcMADS1 does not complement the tomato LeMADS-RIN (rin) mutant.

Moyle RL, Koia JH, Vrebalov J, Giovannoni J, Botella JR.

Plant Mol Biol. 2014 Nov;86(4-5):395-407. doi: 10.1007/s11103-014-0236-3. Epub 2014 Aug 20.

PMID:
25139231
8.

The genome of the stress-tolerant wild tomato species Solanum pennellii.

Bolger A, Scossa F, Bolger ME, Lanz C, Maumus F, Tohge T, Quesneville H, Alseekh S, Sørensen I, Lichtenstein G, Fich EA, Conte M, Keller H, Schneeberger K, Schwacke R, Ofner I, Vrebalov J, Xu Y, Osorio S, Aflitos SA, Schijlen E, Jiménez-Goméz JM, Ryngajllo M, Kimura S, Kumar R, Koenig D, Headland LR, Maloof JN, Sinha N, van Ham RC, Lankhorst RK, Mao L, Vogel A, Arsova B, Panstruga R, Fei Z, Rose JK, Zamir D, Carrari F, Giovannoni JJ, Weigel D, Usadel B, Fernie AR.

Nat Genet. 2014 Sep;46(9):1034-8. doi: 10.1038/ng.3046. Epub 2014 Jul 27.

PMID:
25064008
9.

Tomato GOLDEN2-LIKE transcription factors reveal molecular gradients that function during fruit development and ripening.

Nguyen CV, Vrebalov JT, Gapper NE, Zheng Y, Zhong S, Fei Z, Giovannoni JJ.

Plant Cell. 2014 Feb;26(2):585-601. doi: 10.1105/tpc.113.118794. Epub 2014 Feb 7.

10.

Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening.

Zhong S, Fei Z, Chen YR, Zheng Y, Huang M, Vrebalov J, McQuinn R, Gapper N, Liu B, Xiang J, Shao Y, Giovannoni JJ.

Nat Biotechnol. 2013 Feb;31(2):154-9. doi: 10.1038/nbt.2462. Epub 2013 Jan 27.

PMID:
23354102
11.

A draft genome sequence of Nicotiana benthamiana to enhance molecular plant-microbe biology research.

Bombarely A, Rosli HG, Vrebalov J, Moffett P, Mueller LA, Martin GB.

Mol Plant Microbe Interact. 2012 Dec;25(12):1523-30. doi: 10.1094/MPMI-06-12-0148-TA.

12.

The tomato MADS-box transcription factor RIPENING INHIBITOR interacts with promoters involved in numerous ripening processes in a COLORLESS NONRIPENING-dependent manner.

Martel C, Vrebalov J, Tafelmeyer P, Giovannoni JJ.

Plant Physiol. 2011 Nov;157(3):1568-79. doi: 10.1104/pp.111.181107. Epub 2011 Sep 22.

13.

A tomato (Solanum lycopersicum) APETALA2/ERF gene, SlAP2a, is a negative regulator of fruit ripening.

Chung MY, Vrebalov J, Alba R, Lee J, McQuinn R, Chung JD, Klein P, Giovannoni J.

Plant J. 2010 Dec;64(6):936-47. doi: 10.1111/j.1365-313X.2010.04384.x. Epub 2010 Nov 17.

14.

A SEPALLATA gene is involved in the development and ripening of strawberry (Fragaria x ananassa Duch.) fruit, a non-climacteric tissue.

Seymour GB, Ryder CD, Cevik V, Hammond JP, Popovich A, King GJ, Vrebalov J, Giovannoni JJ, Manning K.

J Exp Bot. 2011 Jan;62(3):1179-88. doi: 10.1093/jxb/erq360. Epub 2010 Nov 29.

15.

The regulation of MADS-box gene expression during ripening of banana and their regulatory interaction with ethylene.

Elitzur T, Vrebalov J, Giovannoni JJ, Goldschmidt EE, Friedman H.

J Exp Bot. 2010 Mar;61(5):1523-35. doi: 10.1093/jxb/erq017. Epub 2010 Mar 3.

16.

Genomic analysis of wild tomato introgressions determining metabolism- and yield-associated traits.

Kamenetzky L, Asís R, Bassi S, de Godoy F, Bermúdez L, Fernie AR, Van Sluys MA, Vrebalov J, Giovannoni JJ, Rossi M, Carrari F.

Plant Physiol. 2010 Apr;152(4):1772-86. doi: 10.1104/pp.109.150532. Epub 2010 Jan 29.

17.

Fleshy fruit expansion and ripening are regulated by the Tomato SHATTERPROOF gene TAGL1.

Vrebalov J, Pan IL, Arroyo AJ, McQuinn R, Chung M, Poole M, Rose J, Seymour G, Grandillo S, Giovannoni J, Irish VF.

Plant Cell. 2009 Oct;21(10):3041-62. doi: 10.1105/tpc.109.066936. Epub 2009 Oct 30.

18.

Sequencing and comparative analysis of a conserved syntenic segment in the Solanaceae.

Wang Y, Diehl A, Wu F, Vrebalov J, Giovannoni J, Siepel A, Tanksley SD.

Genetics. 2008 Sep;180(1):391-408. doi: 10.1534/genetics.108.087981. Epub 2008 Aug 24.

19.

Changes in regulation of a transcription factor lead to autogamy in cultivated tomatoes.

Chen KY, Cong B, Wing R, Vrebalov J, Tanksley SD.

Science. 2007 Oct 26;318(5850):643-5.

20.

A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation.

Kelleher CT, Chiu R, Shin H, Bosdet IE, Krzywinski MI, Fjell CD, Wilkin J, Yin T, DiFazio SP, Ali J, Asano JK, Chan S, Cloutier A, Girn N, Leach S, Lee D, Mathewson CA, Olson T, O'connor K, Prabhu AL, Smailus DE, Stott JM, Tsai M, Wye NH, Yang GS, Zhuang J, Holt RA, Putnam NH, Vrebalov J, Giovannoni JJ, Grimwood J, Schmutz J, Rokhsar D, Jones SJ, Marra MA, Tuskan GA, Bohlmann J, Ellis BE, Ritland K, Douglas CJ, Schein JE.

Plant J. 2007 Jun;50(6):1063-78. Epub 2007 May 3.

21.

S locus genes and the evolution of self-fertility in Arabidopsis thaliana.

Sherman-Broyles S, Boggs N, Farkas A, Liu P, Vrebalov J, Nasrallah ME, Nasrallah JB.

Plant Cell. 2007 Jan;19(1):94-106. Epub 2007 Jan 19.

22.

The cauliflower Or gene encodes a DnaJ cysteine-rich domain-containing protein that mediates high levels of beta-carotene accumulation.

Lu S, Van Eck J, Zhou X, Lopez AB, O'Halloran DM, Cosman KM, Conlin BJ, Paolillo DJ, Garvin DF, Vrebalov J, Kochian LV, Küpper H, Earle ED, Cao J, Li L.

Plant Cell. 2006 Dec;18(12):3594-605. Epub 2006 Dec 15.

23.

Role of beta-oxidation in jasmonate biosynthesis and systemic wound signaling in tomato.

Li C, Schilmiller AL, Liu G, Lee GI, Jayanty S, Sageman C, Vrebalov J, Giovannoni JJ, Yagi K, Kobayashi Y, Howe GA.

Plant Cell. 2005 Mar;17(3):971-86. Epub 2005 Feb 18.

24.

Manipulation of light signal transduction as a means of modifying fruit nutritional quality in tomato.

Liu Y, Roof S, Ye Z, Barry C, van Tuinen A, Vrebalov J, Bowler C, Giovannoni J.

Proc Natl Acad Sci U S A. 2004 Jun 29;101(26):9897-902. Epub 2004 Jun 3.

25.
26.

High-resolution genetic and physical mapping of the cauliflower high-beta-carotene gene Or ( Orange).

Li L, Lu S, O'Halloran DM, Garvin DF, Vrebalov J.

Mol Genet Genomics. 2003 Nov;270(2):132-8. Epub 2003 Aug 8.

PMID:
12908106
27.

Sequence-based alignment of sorghum chromosome 3 and rice chromosome 1 reveals extensive conservation of gene order and one major chromosomal rearrangement.

Klein PE, Klein RR, Vrebalov J, Mullet JE.

Plant J. 2003 Jun;34(5):605-21. Erratum in: Plant J. 2003 Nov;36(3):430-2.

28.

Use of genomics tools to isolate key ripening genes and analyse fruit maturation in tomato.

Moore S, Vrebalov J, Payton P, Giovannoni J.

J Exp Bot. 2002 Oct;53(377):2023-30. Review.

PMID:
12324526
29.

A MADS-box gene necessary for fruit ripening at the tomato ripening-inhibitor (rin) locus.

Vrebalov J, Ruezinsky D, Padmanabhan V, White R, Medrano D, Drake R, Schuch W, Giovannoni J.

Science. 2002 Apr 12;296(5566):343-6.

30.

Self-incompatibility in the genus Arabidopsis: characterization of the S locus in the outcrossing A. lyrata and its autogamous relative A. thaliana.

Kusaba M, Dwyer K, Hendershot J, Vrebalov J, Nasrallah JB, Nasrallah ME.

Plant Cell. 2001 Mar;13(3):627-43.

31.

Two-dimensional screening of the Wageningen chicken BAC library.

Crooijmans RP, Vrebalov J, Dijkhof RJ, van der Poel JJ, Groenen MA.

Mamm Genome. 2000 May;11(5):360-3.

PMID:
10790534
32.

Determining the physical limits of the Brassica S locus by recombinational analysis.

Casselman AL, Vrebalov J, Conner JA, Singhal A, Giovannoni J, Nasrallah ME, Nasrallah JB.

Plant Cell. 2000 Jan;12(1):23-33.

33.

Molecular and genetic characterization of a novel pleiotropic tomato-ripening mutant

Thompson AJ, Tor M, Barry CS, Vrebalov J, Orfila C, Jarvis MC, Giovannoni JJ, Grierson D, Seymour GB.

Plant Physiol. 1999 Jun;120(2):383-90.

34.

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