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Items: 1 to 50 of 172

1.

Genome Editing for Crop Improvement - Applications in Clonally Propagated Polyploids With a Focus on Potato (Solanum tuberosum L.).

Nadakuduti SS, Buell CR, Voytas DF, Starker CG, Douches DS.

Front Plant Sci. 2018 Nov 13;9:1607. doi: 10.3389/fpls.2018.01607. eCollection 2018.

2.

De novo domestication of wild tomato using genome editing.

Zsögön A, Čermák T, Naves ER, Notini MM, Edel KH, Weinl S, Freschi L, Voytas DF, Kudla J, Peres LEP.

Nat Biotechnol. 2018 Oct 1. doi: 10.1038/nbt.4272. [Epub ahead of print]

PMID:
30272678
3.

Essential nucleotide- and protein-dependent functions of Actb/β-actin.

Patrinostro X, Roy P, Lindsay A, Chamberlain CM, Sundby LJ, Starker CG, Voytas DF, Ervasti JM, Perrin BJ.

Proc Natl Acad Sci U S A. 2018 Jul 31;115(31):7973-7978. doi: 10.1073/pnas.1807895115. Epub 2018 Jul 16.

PMID:
30012594
4.

Synthetic genomes engineered by SCRaMbLEing.

Zhang F, Voytas DF.

Sci China Life Sci. 2018 Aug;61(8):975-977. doi: 10.1007/s11427-018-9325-1. Epub 2018 Jun 26. No abstract available.

PMID:
29951952
5.

Editing plant genes one base at a time.

Shan Q, Voytas DF.

Nat Plants. 2018 Jul;4(7):412-413. doi: 10.1038/s41477-018-0177-y. No abstract available.

PMID:
29867127
6.

Targeted mutagenesis in wheat microspores using CRISPR/Cas9.

Bhowmik P, Ellison E, Polley B, Bollina V, Kulkarni M, Ghanbarnia K, Song H, Gao C, Voytas DF, Kagale S.

Sci Rep. 2018 Apr 25;8(1):6502. doi: 10.1038/s41598-018-24690-8.

7.

Threshold-dependent repression of SPL gene expression by miR156/miR157 controls vegetative phase change in Arabidopsis thaliana.

He J, Xu M, Willmann MR, McCormick K, Hu T, Yang L, Starker CG, Voytas DF, Meyers BC, Poethig RS.

PLoS Genet. 2018 Apr 19;14(4):e1007337. doi: 10.1371/journal.pgen.1007337. eCollection 2018 Apr.

8.

Agrobacterium rhizogenes-mediated transformation of a dioecious plant model Silene latifolia.

Hudzieczek V, Cegan R, Cermak T, Bacovska N, Machalkova Z, Dolezal K, Plihalova L, Voytas D, Hobza R, Vyskot B.

N Biotechnol. 2019 Jan 25;48:20-28. doi: 10.1016/j.nbt.2018.04.001. Epub 2018 Apr 12.

9.

Novel alleles of rice eIF4G generated by CRISPR/Cas9-targeted mutagenesis confer resistance to Rice tungro spherical virus.

Macovei A, Sevilla NR, Cantos C, Jonson GB, Slamet-Loedin I, Čermák T, Voytas DF, Choi IR, Chadha-Mohanty P.

Plant Biotechnol J. 2018 Nov;16(11):1918-1927. doi: 10.1111/pbi.12927. Epub 2018 Apr 30.

10.

Allele exchange at the EPSPS locus confers glyphosate tolerance in cassava.

Hummel AW, Chauhan RD, Cermak T, Mutka AM, Vijayaraghavan A, Boyher A, Starker CG, Bart R, Voytas DF, Taylor NJ.

Plant Biotechnol J. 2018 Jul;16(7):1275-1282. doi: 10.1111/pbi.12868. Epub 2018 Jan 22.

11.

Robust Transcriptional Activation in Plants Using Multiplexed CRISPR-Act2.0 and mTALE-Act Systems.

Lowder LG, Zhou J, Zhang Y, Malzahn A, Zhong Z, Hsieh TF, Voytas DF, Zhang Y, Qi Y.

Mol Plant. 2018 Feb 5;11(2):245-256. doi: 10.1016/j.molp.2017.11.010. Epub 2017 Nov 29.

PMID:
29197638
12.

CRISPR/Cas9 and TALENs generate heritable mutations for genes involved in small RNA processing of Glycine max and Medicago truncatula.

Curtin SJ, Xiong Y, Michno JM, Campbell BW, Stec AO, Čermák T, Starker C, Voytas DF, Eamens AL, Stupar RM.

Plant Biotechnol J. 2018 Jun;16(6):1125-1137. doi: 10.1111/pbi.12857. Epub 2017 Dec 4.

13.

RNA targeting with CRISPR-Cas13.

Abudayyeh OO, Gootenberg JS, Essletzbichler P, Han S, Joung J, Belanto JJ, Verdine V, Cox DBT, Kellner MJ, Regev A, Lander ES, Voytas DF, Ting AY, Zhang F.

Nature. 2017 Oct 12;550(7675):280-284. doi: 10.1038/nature24049. Epub 2017 Oct 4.

14.

Targeting a Single Alternative Polyadenylation Site Coordinately Blocks Expression of Androgen Receptor mRNA Splice Variants in Prostate Cancer.

Van Etten JL, Nyquist M, Li Y, Yang R, Ho Y, Johnson R, Ondigi O, Voytas DF, Henzler C, Dehm SM.

Cancer Res. 2017 Oct 1;77(19):5228-5235. doi: 10.1158/0008-5472.CAN-17-0320. Epub 2017 Aug 15.

15.

Low-gluten, nontransgenic wheat engineered with CRISPR/Cas9.

Sánchez-León S, Gil-Humanes J, Ozuna CV, Giménez MJ, Sousa C, Voytas DF, Barro F.

Plant Biotechnol J. 2018 Apr;16(4):902-910. doi: 10.1111/pbi.12837. Epub 2017 Nov 24.

16.

Evaluation of the mature grain phytase candidate HvPAPhy_a gene in barley (Hordeum vulgare L.) using CRISPR/Cas9 and TALENs.

Holme IB, Wendt T, Gil-Humanes J, Deleuran LC, Starker CG, Voytas DF, Brinch-Pedersen H.

Plant Mol Biol. 2017 Sep;95(1-2):111-121. doi: 10.1007/s11103-017-0640-6. Epub 2017 Jul 28.

PMID:
28755320
17.

Genome Engineering and Agriculture: Opportunities and Challenges.

Baltes NJ, Gil-Humanes J, Voytas DF.

Prog Mol Biol Transl Sci. 2017;149:1-26. doi: 10.1016/bs.pmbts.2017.03.011. Epub 2017 May 3. Review.

PMID:
28712492
18.

A CRISPR-Cpf1 system for efficient genome editing and transcriptional repression in plants.

Tang X, Lowder LG, Zhang T, Malzahn AA, Zheng X, Voytas DF, Zhong Z, Chen Y, Ren Q, Li Q, Kirkland ER, Zhang Y, Qi Y.

Nat Plants. 2017 Jun 19;3:17103. doi: 10.1038/nplants.2017.103.

PMID:
28628131
19.

Technology Turbocharges Functional Genomics.

Buell CR, Voytas D.

Plant Cell. 2017 Jun;29(6):1179-1180. doi: 10.1105/tpc.17.00443. Epub 2017 Jun 5. No abstract available.

20.

A Multipurpose Toolkit to Enable Advanced Genome Engineering in Plants.

Čermák T, Curtin SJ, Gil-Humanes J, Čegan R, Kono TJY, Konečná E, Belanto JJ, Starker CG, Mathre JW, Greenstein RL, Voytas DF.

Plant Cell. 2017 Jun;29(6):1196-1217. doi: 10.1105/tpc.16.00922. Epub 2017 May 18.

21.

Downregulation of Plzf Gene Ameliorates Metabolic and Cardiac Traits in the Spontaneously Hypertensive Rat.

Liška F, Landa V, Zídek V, Mlejnek P, Šilhavý J, Šimáková M, Strnad H, Trnovská J, Škop V, Kazdová L, Starker CG, Voytas DF, Izsvák Z, Mancini M, Šeda O, Křen V, Pravenec M.

Hypertension. 2017 Jun;69(6):1084-1091. doi: 10.1161/HYPERTENSIONAHA.116.08798. Epub 2017 Apr 10.

PMID:
28396530
22.

A CRISPR-Cpf1 system for efficient genome editing and transcriptional repression in plants.

Tang X, Lowder LG, Zhang T, Malzahn AA, Zheng X, Voytas DF, Zhong Z, Chen Y, Ren Q, Li Q, Kirkland ER, Zhang Y, Qi Y.

Nat Plants. 2017 Feb 17;3:17018. doi: 10.1038/nplants.2017.18. Erratum in: Nat Plants. 2017 Jun 19;3:17103.

PMID:
28211909
23.

Genome editing as a tool to achieve the crop ideotype and de novo domestication of wild relatives: Case study in tomato.

Zsögön A, Cermak T, Voytas D, Peres LE.

Plant Sci. 2017 Mar;256:120-130. doi: 10.1016/j.plantsci.2016.12.012. Epub 2016 Dec 28. Review.

PMID:
28167025
24.

Gene expression atlas for the food security crop cassava.

Wilson MC, Mutka AM, Hummel AW, Berry J, Chauhan RD, Vijayaraghavan A, Taylor NJ, Voytas DF, Chitwood DH, Bart RS.

New Phytol. 2017 Mar;213(4):1632-1641. doi: 10.1111/nph.14443. Epub 2017 Jan 24.

25.

Validating Genome-Wide Association Candidates Controlling Quantitative Variation in Nodulation.

Curtin SJ, Tiffin P, Guhlin J, Trujillo DI, Burghart LT, Atkins P, Baltes NJ, Denny R, Voytas DF, Stupar RM, Young ND.

Plant Physiol. 2017 Feb;173(2):921-931. doi: 10.1104/pp.16.01923. Epub 2017 Jan 5.

26.

High-efficiency gene targeting in hexaploid wheat using DNA replicons and CRISPR/Cas9.

Gil-Humanes J, Wang Y, Liang Z, Shan Q, Ozuna CV, Sánchez-León S, Baltes NJ, Starker C, Barro F, Gao C, Voytas DF.

Plant J. 2017 Mar;89(6):1251-1262. doi: 10.1111/tpj.13446. Epub 2017 Feb 13.

27.

Vimentin Intermediate Filaments Template Microtubule Networks to Enhance Persistence in Cell Polarity and Directed Migration.

Gan Z, Ding L, Burckhardt CJ, Lowery J, Zaritsky A, Sitterley K, Mota A, Costigliola N, Starker CG, Voytas DF, Tytell J, Goldman RD, Danuser G.

Cell Syst. 2016 Nov 23;3(5):500-501. doi: 10.1016/j.cels.2016.11.011. No abstract available.

28.

Direct stacking of sequence-specific nuclease-induced mutations to produce high oleic and low linolenic soybean oil.

Demorest ZL, Coffman A, Baltes NJ, Stoddard TJ, Clasen BM, Luo S, Retterath A, Yabandith A, Gamo ME, Bissen J, Mathis L, Voytas DF, Zhang F.

BMC Plant Biol. 2016 Oct 13;16(1):225.

29.

Targeting of the Plzf Gene in the Rat by Transcription Activator-Like Effector Nuclease Results in Caudal Regression Syndrome in Spontaneously Hypertensive Rats.

Liška F, Peterková R, Peterka M, Landa V, Zídek V, Mlejnek P, Šilhavý J, Šimáková M, Křen V, Starker CG, Voytas DF, Izsvák Z, Pravenec M.

PLoS One. 2016 Oct 11;11(10):e0164206. doi: 10.1371/journal.pone.0164206. eCollection 2016.

30.

Vimentin Intermediate Filaments Template Microtubule Networks to Enhance Persistence in Cell Polarity and Directed Migration.

Gan Z, Ding L, Burckhardt CJ, Lowery J, Zaritsky A, Sitterley K, Mota A, Costigliola N, Starker CG, Voytas DF, Tytell J, Goldman RD, Danuser G.

Cell Syst. 2016 Sep 28;3(3):252-263.e8. doi: 10.1016/j.cels.2016.08.007. Epub 2016 Sep 22. Erratum in: Cell Syst. 2016 Nov 23;3(5):500-501.

31.

Highly efficient gene tagging in the bryophyte Physcomitrella patens using the tobacco (Nicotiana tabacum) Tnt1 retrotransposon.

Vives C, Charlot F, Mhiri C, Contreras B, Daniel J, Epert A, Voytas DF, Grandbastien MA, Nogué F, Casacuberta JM.

New Phytol. 2016 Nov;212(3):759-769. doi: 10.1111/nph.14152. Epub 2016 Aug 22.

32.

Geminivirus-Mediated Genome Editing in Potato (Solanum tuberosum L.) Using Sequence-Specific Nucleases.

Butler NM, Baltes NJ, Voytas DF, Douches DS.

Front Plant Sci. 2016 Jul 21;7:1045. doi: 10.3389/fpls.2016.01045. eCollection 2016.

33.

Advancing Crop Transformation in the Era of Genome Editing.

Altpeter F, Springer NM, Bartley LE, Blechl AE, Brutnell TP, Citovsky V, Conrad LJ, Gelvin SB, Jackson DP, Kausch AP, Lemaux PG, Medford JI, Orozco-Cárdenas ML, Tricoli DM, Van Eck J, Voytas DF, Walbot V, Wang K, Zhang ZJ, Stewart CN Jr.

Plant Cell. 2016 Jul;28(7):1510-20. doi: 10.1105/tpc.16.00196. Epub 2016 Jun 22. Review.

34.

Gene editing and its application for hematological diseases.

Osborn MJ, Belanto JJ, Tolar J, Voytas DF.

Int J Hematol. 2016 Jul;104(1):18-28. doi: 10.1007/s12185-016-2017-z. Epub 2016 May 27. Review.

35.

A Single Transcript CRISPR-Cas9 System for Efficient Genome Editing in Plants.

Tang X, Zheng X, Qi Y, Zhang D, Cheng Y, Tang A, Voytas DF, Zhang Y.

Mol Plant. 2016 Jul 6;9(7):1088-91. doi: 10.1016/j.molp.2016.05.001. Epub 2016 May 19. No abstract available.

36.

Targeted Mutagenesis in Plant Cells through Transformation of Sequence-Specific Nuclease mRNA.

Stoddard TJ, Clasen BM, Baltes NJ, Demorest ZL, Voytas DF, Zhang F, Luo S.

PLoS One. 2016 May 13;11(5):e0154634. doi: 10.1371/journal.pone.0154634. eCollection 2016.

37.

Editorial Prerogative and the Plant Genome.

Voytas DF.

J Genet Genomics. 2016 May 20;43(5):229-32. doi: 10.1016/j.jgg.2016.03.004. Epub 2016 Mar 22. No abstract available.

PMID:
27173836
38.

Regulate genome-edited products, not genome editing itself.

Carroll D, Van Eenennaam AL, Taylor JF, Seger J, Voytas DF.

Nat Biotechnol. 2016 May 6;34(5):477-9. doi: 10.1038/nbt.3566. No abstract available.

PMID:
27153273
39.

The ULK1 complex mediates MTORC1 signaling to the autophagy initiation machinery via binding and phosphorylating ATG14.

Park JM, Jung CH, Seo M, Otto NM, Grunwald D, Kim KH, Moriarity B, Kim YM, Starker C, Nho RS, Voytas D, Kim DH.

Autophagy. 2016;12(3):547-64. doi: 10.1080/15548627.2016.1140293.

40.

Histone H2AX and the small RNA pathway modulate both non-homologous end-joining and homologous recombination in plants.

Qi Y, Zhang Y, Baller JA, Voytas DF.

Mutat Res. 2016 Jan;783:9-14. doi: 10.1016/j.mrfmmm.2015.12.002. Epub 2015 Dec 4.

PMID:
26687994
41.

MicroRNA Maturation and MicroRNA Target Gene Expression Regulation Are Severely Disrupted in Soybean dicer-like1 Double Mutants.

Curtin SJ, Michno JM, Campbell BW, Gil-Humanes J, Mathioni SM, Hammond R, Gutierrez-Gonzalez JJ, Donohue RC, Kantar MB, Eamens AL, Meyers BC, Voytas DF, Stupar RM.

G3 (Bethesda). 2015 Dec 17;6(2):423-33. doi: 10.1534/g3.115.022137.

42.

A Defect in DNA Ligase4 Enhances the Frequency of TALEN-Mediated Targeted Mutagenesis in Rice.

Nishizawa-Yokoi A, Cermak T, Hoshino T, Sugimoto K, Saika H, Mori A, Osakabe K, Hamada M, Katayose Y, Starker C, Voytas DF, Toki S.

Plant Physiol. 2016 Feb;170(2):653-66. doi: 10.1104/pp.15.01542. Epub 2015 Dec 14.

43.

Generation and Inheritance of Targeted Mutations in Potato (Solanum tuberosum L.) Using the CRISPR/Cas System.

Butler NM, Atkins PA, Voytas DF, Douches DS.

PLoS One. 2015 Dec 14;10(12):e0144591. doi: 10.1371/journal.pone.0144591. eCollection 2015.

44.

Accelerating research through reagent repositories: the genome editing example.

Joung JK, Voytas DF, Kamens J.

Genome Biol. 2015 Nov 20;16:255. doi: 10.1186/s13059-015-0830-y.

45.

High-frequency, precise modification of the tomato genome.

Čermák T, Baltes NJ, Čegan R, Zhang Y, Voytas DF.

Genome Biol. 2015 Nov 6;16:232. doi: 10.1186/s13059-015-0796-9.

46.

Evaluation of TCR Gene Editing Achieved by TALENs, CRISPR/Cas9, and megaTAL Nucleases.

Osborn MJ, Webber BR, Knipping F, Lonetree CL, Tennis N, DeFeo AP, McElroy AN, Starker CG, Lee C, Merkel S, Lund TC, Kelly-Spratt KS, Jensen MC, Voytas DF, von Kalle C, Schmidt M, Gabriel R, Hippen KL, Miller JS, Scharenberg AM, Tolar J, Blazar BR.

Mol Ther. 2016 Mar;24(3):570-81. doi: 10.1038/mt.2015.197. Epub 2015 Oct 27.

47.

A CRISPR/Cas9 Toolbox for Multiplexed Plant Genome Editing and Transcriptional Regulation.

Lowder LG, Zhang D, Baltes NJ, Paul JW 3rd, Tang X, Zheng X, Voytas DF, Hsieh TF, Zhang Y, Qi Y.

Plant Physiol. 2015 Oct;169(2):971-85. doi: 10.1104/pp.15.00636. Epub 2015 Aug 21.

48.

Non-transgenic Plant Genome Editing Using Purified Sequence-Specific Nucleases.

Luo S, Li J, Stoddard TJ, Baltes NJ, Demorest ZL, Clasen BM, Coffman A, Retterath A, Mathis L, Voytas DF, Zhang F.

Mol Plant. 2015 Sep;8(9):1425-7. doi: 10.1016/j.molp.2015.05.012. Epub 2015 Jun 12. No abstract available.

49.

Multiplexed, targeted gene editing in Nicotiana benthamiana for glyco-engineering and monoclonal antibody production.

Li J, Stoddard TJ, Demorest ZL, Lavoie PO, Luo S, Clasen BM, Cedrone F, Ray EE, Coffman AP, Daulhac A, Yabandith A, Retterath AJ, Mathis L, Voytas DF, D'Aoust MA, Zhang F.

Plant Biotechnol J. 2016 Feb;14(2):533-42. doi: 10.1111/pbi.12403. Epub 2015 May 25.

50.

Retrotransposons. An RNA polymerase III subunit determines sites of retrotransposon integration.

Bridier-Nahmias A, Tchalikian-Cosson A, Baller JA, Menouni R, Fayol H, Flores A, Saïb A, Werner M, Voytas DF, Lesage P.

Science. 2015 May 1;348(6234):585-8. doi: 10.1126/science.1259114.

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