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Items: 48

1.

Regulatory associations between the metabolism of sulfur-containing amino acids and xanthan biosynthesis in Xanthomonas campestris pv. campestris B100.

Schulte F, Leßmeier L, Voss J, Ortseifen V, Vorhölter FJ, Niehaus K.

FEMS Microbiol Lett. 2019 Jan 1;366(2). doi: 10.1093/femsle/fnz005.

PMID:
30649298
2.

Comparative transcription profiling of two fermentation cultures of Xanthomonas campestris pv. campestris B100 sampled in the growth and in the stationary phase.

Alkhateeb RS, Vorhölter FJ, Steffens T, Rückert C, Ortseifen V, Hublik G, Niehaus K, Pühler A.

Appl Microbiol Biotechnol. 2018 Aug;102(15):6613-6625. doi: 10.1007/s00253-018-9106-2. Epub 2018 Jun 1.

PMID:
29858955
3.

Systems and synthetic biology perspective of the versatile plant-pathogenic and polysaccharide-producing bacterium Xanthomonas campestris.

Schatschneider S, Schneider J, Blom J, Létisse F, Niehaus K, Goesmann A, Vorhölter FJ.

Microbiology. 2017 Aug;163(8):1117-1144. doi: 10.1099/mic.0.000473. Epub 2017 Aug 10. Review.

PMID:
28795660
4.

Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence data.

Alkhateeb RS, Rückert C, Rupp O, Pucker B, Hublik G, Wibberg D, Niehaus K, Pühler A, Vorhölter FJ.

J Biotechnol. 2017 Jul 10;253:55-61. doi: 10.1016/j.jbiotec.2017.05.009. Epub 2017 May 12.

PMID:
28506932
5.

The lipopolysaccharide of the crop pathogen Xanthomonas translucens pv. translucens: chemical characterization and determination of signaling events in plant cells.

Steffens T, Duda K, Lindner B, Vorhölter FJ, Bednarz H, Niehaus K, Holst O.

Glycobiology. 2017 Mar 15;27(3):264-274. doi: 10.1093/glycob/cww093.

PMID:
28177490
6.

Comparative genomics of host adaptive traits in Xanthomonas translucens pv. graminis.

Hersemann L, Wibberg D, Blom J, Goesmann A, Widmer F, Vorhölter FJ, Kölliker R.

BMC Genomics. 2017 Jan 5;18(1):35. doi: 10.1186/s12864-016-3422-7.

7.

Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974T (ATCC 19319T).

Jaenicke S, Bunk B, Wibberg D, Spröer C, Hersemann L, Blom J, Winkler A, Schatschneider S, Albaum SP, Kölliker R, Goesmann A, Pühler A, Overmann J, Vorhölter FJ.

Genome Announc. 2016 Dec 1;4(6). pii: e01334-16. doi: 10.1128/genomeA.01334-16.

8.

Draft genome sequences of three Xanthomonas translucens pathovar reference strains (pv. arrhenatheri, pv. poae and pv. phlei) with different specificities for forage grasses.

Hersemann L, Wibberg D, Widmer F, Vorhölter FJ, Kölliker R.

Stand Genomic Sci. 2016 Aug 17;11:50. doi: 10.1186/s40793-016-0170-x. eCollection 2016.

9.

The influence of a modified lipopolysaccharide O-antigen on the biosynthesis of xanthan in Xanthomonas campestris pv. campestris B100.

Steffens T, Vorhölter FJ, Giampà M, Hublik G, Pühler A, Niehaus K.

BMC Microbiol. 2016 May 23;16:93. doi: 10.1186/s12866-016-0710-y.

10.

Applying DNA affinity chromatography to specifically screen for sucrose-related DNA-binding transcriptional regulators of Xanthomonas campestris.

Leßmeier L, Alkhateeb RS, Schulte F, Steffens T, Loka TP, Pühler A, Niehaus K, Vorhölter FJ.

J Biotechnol. 2016 Aug 20;232:89-98. doi: 10.1016/j.jbiotec.2016.04.007. Epub 2016 Apr 7.

PMID:
27060555
11.

Genome wide transcription start sites analysis of Xanthomonas campestris pv. campestris B100 with insights into the gum gene cluster directing the biosynthesis of the exopolysaccharide xanthan.

Alkhateeb RS, Vorhölter FJ, Rückert C, Mentz A, Wibberg D, Hublik G, Niehaus K, Pühler A.

J Biotechnol. 2016 May 10;225:18-28. doi: 10.1016/j.jbiotec.2016.03.020. Epub 2016 Mar 11.

PMID:
26975844
12.

Genome Sequence of the Urethral Isolate Pseudomonas aeruginosa RN21.

Wibberg D, Tielen P, Narten M, Schobert M, Blom J, Schatschneider S, Meyer AK, Neubauer R, Albersmeier A, Albaum S, Jahn M, Goesmann A, Vorhölter FJ, Pühler A, Jahn D.

Genome Announc. 2015 Jul 16;3(4). pii: e00788-15. doi: 10.1128/genomeA.00788-15.

13.

Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum.

Arnold M, Wibberg D, Blom J, Schatschneider S, Winkler A, Kutter Y, Rückert C, Albersmeier A, Albaum S, Goesmann A, Zange S, Heesemann J, Pühler A, Hogardt M, Vorhölter FJ.

Genome Announc. 2015 Jul 2;3(4). pii: e00680-15. doi: 10.1128/genomeA.00680-15.

14.

Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951).

Wibberg D, Alkhateeb RS, Winkler A, Albersmeier A, Schatschneider S, Albaum S, Niehaus K, Hublik G, Pühler A, Vorhölter FJ.

J Biotechnol. 2015 Jun 20;204:45-6. doi: 10.1016/j.jbiotec.2015.03.026. Epub 2015 Apr 9.

PMID:
25865276
15.

Genome Sequence of the Urethral Catheter Isolate Pseudomonas aeruginosa MH19.

Vorhölter FJ, Tielen P, Wibberg D, Narten M, Schobert M, Tüpker R, Blom J, Schatschneider S, Winkler A, Albersmeier A, Goesmann A, Pühler A, Jahn D.

Genome Announc. 2015 Mar 12;3(2). pii: e00115-15. doi: 10.1128/genomeA.00115-15.

16.

Draft Genome Sequence of Pseudomonas aeruginosa Strain WS394, a Multidrug-Resistant and Highly Cytotoxic Wound Isolate from Chronic Ulcus Cruris.

Vorhölter FJ, Arnold M, Wibberg D, Blom J, Winkler A, Viehoever P, Albersmeier A, Goesmann A, Zange S, Heesemann J, Pühler A, Hogardt M.

Genome Announc. 2014 Dec 18;2(6). pii: e01325-14. doi: 10.1128/genomeA.01325-14.

17.

Metabolic flux pattern of glucose utilization by Xanthomonas campestris pv. campestris: prevalent role of the Entner-Doudoroff pathway and minor fluxes through the pentose phosphate pathway and glycolysis.

Schatschneider S, Huber C, Neuweger H, Watt TF, Pühler A, Eisenreich W, Wittmann C, Niehaus K, Vorhölter FJ.

Mol Biosyst. 2014 Oct;10(10):2663-76. doi: 10.1039/c4mb00198b.

PMID:
25072918
18.

Genome Sequence of the Acute Urethral Catheter Isolate Pseudomonas aeruginosa MH38.

Wibberg D, Tielen P, Blom J, Rosin N, Schobert M, Tüpker R, Schatschneider S, Spilker D, Albersmeier A, Goesmann A, Vorhölter FJ, Pühler A, Jahn D.

Genome Announc. 2014 Mar 13;2(2). pii: e00161-14. doi: 10.1128/genomeA.00161-14.

19.

Characterization of the pyrophosphate-dependent 6-phosphofructokinase from Xanthomonas campestris pv. campestris.

Frese M, Schatschneider S, Voss J, Vorhölter FJ, Niehaus K.

Arch Biochem Biophys. 2014 Mar 15;546:53-63. doi: 10.1016/j.abb.2014.01.023. Epub 2014 Feb 6.

PMID:
24508689
20.

Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection.

Tielen P, Wibberg D, Blom J, Rosin N, Meyer AK, Bunk B, Schobert M, Tüpker R, Schatschneider S, Rückert C, Albersmeier A, Goesmann A, Vorhölter FJ, Jahn D, Pühler A.

Genome Announc. 2014 Jan 23;2(1). pii: e01174-13. doi: 10.1128/genomeA.01174-13.

21.

Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil.

Köhler KA, Rückert C, Schatschneider S, Vorhölter FJ, Szczepanowski R, Blank LM, Niehaus K, Goesmann A, Pühler A, Kalinowski J, Schmid A.

J Biotechnol. 2013 Dec;168(4):729-30. doi: 10.1016/j.jbiotec.2013.10.016. Epub 2013 Oct 24.

PMID:
24161918
22.

Dynamic protein phosphorylation during the growth of Xanthomonas campestris pv. campestris B100 revealed by a gel-based proteomics approach.

Musa YR, Bäsell K, Schatschneider S, Vorhölter FJ, Becher D, Niehaus K.

J Biotechnol. 2013 Aug 20;167(2):111-22. doi: 10.1016/j.jbiotec.2013.06.009. Epub 2013 Jun 20.

PMID:
23792782
23.

RNA-Seq facilitates a new perspective on signal transduction and gene regulation in important plant pathogens.

Vorhölter FJ.

Mol Microbiol. 2013 Jun;88(6):1041-6. doi: 10.1111/mmi.12259. Epub 2013 May 22.

24.

The noncanonical type III secretion system of Xanthomonas translucens pv. graminis is essential for forage grass infection.

Wichmann F, Vorhölter FJ, Hersemann L, Widmer F, Blom J, Niehaus K, Reinhard S, Conradin C, Kölliker R.

Mol Plant Pathol. 2013 Aug;14(6):576-88. doi: 10.1111/mpp.12030. Epub 2013 Apr 11.

25.

Establishment, in silico analysis, and experimental verification of a large-scale metabolic network of the xanthan producing Xanthomonas campestris pv. campestris strain B100.

Schatschneider S, Persicke M, Watt SA, Hublik G, Pühler A, Niehaus K, Vorhölter FJ.

J Biotechnol. 2013 Aug 20;167(2):123-34. doi: 10.1016/j.jbiotec.2013.01.023. Epub 2013 Feb 6.

PMID:
23395674
26.

Involvement of bacterial TonB-dependent signaling in the generation of an oligogalacturonide damage-associated molecular pattern from plant cell walls exposed to Xanthomonas campestris pv. campestris pectate lyases.

Vorhölter FJ, Wiggerich HG, Scheidle H, Sidhu VK, Mrozek K, Küster H, Pühler A, Niehaus K.

BMC Microbiol. 2012 Oct 19;12:239. doi: 10.1186/1471-2180-12-239.

27.

Genome-enabled determination of amino acid biosynthesis in Xanthomonas campestris pv. campestris and identification of biosynthetic pathways for alanine, glycine, and isoleucine by 13C-isotopologue profiling.

Schatschneider S, Vorhölter FJ, Rückert C, Becker A, Eisenreich W, Pühler A, Niehaus K.

Mol Genet Genomics. 2011 Oct;286(3-4):247-59. doi: 10.1007/s00438-011-0639-7. Epub 2011 Aug 19.

PMID:
21853248
28.

Gene discovery by genome-wide CDS re-prediction and microarray-based transcriptional analysis in phytopathogen Xanthomonas campestris.

Zhou L, Vorhölter FJ, He YQ, Jiang BL, Tang JL, Xu Y, Pühler A, He YW.

BMC Genomics. 2011 Jul 12;12:359. doi: 10.1186/1471-2164-12-359.

29.

The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis.

Pothier JF, Vorhölter FJ, Blom J, Goesmann A, Pühler A, Smits TH, Duffy B.

FEMS Microbiol Lett. 2011 Oct;323(1):52-60. doi: 10.1111/j.1574-6968.2011.02352.x. Epub 2011 Jul 27.

30.

Insights into the genome of the xanthan-producing phytopathogen Xanthomonas arboricola pv. pruni 109 by comparative genomic hybridization.

Mayer L, Vendruscolo CT, Silva WP, Vorhölter FJ, Becker A, Pühler A.

J Biotechnol. 2011 Aug 20;155(1):40-9. doi: 10.1016/j.jbiotec.2011.04.012. Epub 2011 May 1.

PMID:
21539867
31.

Pathogenomics of Xanthomonas: understanding bacterium-plant interactions.

Ryan RP, Vorhölter FJ, Potnis N, Jones JB, Van Sluys MA, Bogdanove AJ, Dow JM.

Nat Rev Microbiol. 2011 May;9(5):344-55. doi: 10.1038/nrmicro2558. Epub 2011 Apr 11. Review.

PMID:
21478901
32.

The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome.

Schneiker-Bekel S, Wibberg D, Bekel T, Blom J, Linke B, Neuweger H, Stiens M, Vorhölter FJ, Weidner S, Goesmann A, Pühler A, Schlüter A.

J Biotechnol. 2011 Aug 20;155(1):20-33. doi: 10.1016/j.jbiotec.2010.12.018. Epub 2011 Mar 17.

PMID:
21396969
33.

Unusual outer membrane lipid composition of the gram-negative, lipopolysaccharide-lacking myxobacterium Sorangium cellulosum So ce56.

Keck M, Gisch N, Moll H, Vorhölter FJ, Gerth K, Kahmann U, Lissel M, Lindner B, Niehaus K, Holst O.

J Biol Chem. 2011 Apr 15;286(15):12850-9. doi: 10.1074/jbc.M110.194209. Epub 2011 Feb 14.

34.

CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks.

Schneider J, Vorhölter FJ, Trost E, Blom J, Musa YR, Neuweger H, Niehaus K, Schatschneider S, Tauch A, Goesmann A.

Genet Mol Res. 2010 Aug 24;9(3):1660-72. doi: 10.4238/vol9-3gmr901.

35.

EDGAR: a software framework for the comparative analysis of prokaryotic genomes.

Blom J, Albaum SP, Doppmeier D, Pühler A, Vorhölter FJ, Zakrzewski M, Goesmann A.

BMC Bioinformatics. 2009 May 20;10:154. doi: 10.1186/1471-2105-10-154.

36.

The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae.

Gross R, Guzman CA, Sebaihia M, dos Santos VA, Pieper DH, Koebnik R, Lechner M, Bartels D, Buhrmester J, Choudhuri JV, Ebensen T, Gaigalat L, Herrmann S, Khachane AN, Larisch C, Link S, Linke B, Meyer F, Mormann S, Nakunst D, Rückert C, Schneiker-Bekel S, Schulze K, Vorhölter FJ, Yevsa T, Engle JT, Goldman WE, Pühler A, Göbel UB, Goesmann A, Blöcker H, Kaiser O, Martinez-Arias R.

BMC Genomics. 2008 Sep 30;9:449. doi: 10.1186/1471-2164-9-449.

37.

Identification of Xanthomonas campestris pv. campestris galactose utilization genes from transcriptome data.

Serrania J, Vorhölter FJ, Niehaus K, Pühler A, Becker A.

J Biotechnol. 2008 Jun 30;135(3):309-17. doi: 10.1016/j.jbiotec.2008.04.011. Epub 2008 May 3.

PMID:
18538881
38.

Analysis of outer membrane vesicle associated proteins isolated from the plant pathogenic bacterium Xanthomonas campestris pv. campestris.

Sidhu VK, Vorhölter FJ, Niehaus K, Watt SA.

BMC Microbiol. 2008 Jun 2;8:87. doi: 10.1186/1471-2180-8-87.

39.

The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis.

Vorhölter FJ, Schneiker S, Goesmann A, Krause L, Bekel T, Kaiser O, Linke B, Patschkowski T, Rückert C, Schmid J, Sidhu VK, Sieber V, Tauch A, Watt SA, Weisshaar B, Becker A, Niehaus K, Pühler A.

J Biotechnol. 2008 Mar 20;134(1-2):33-45. doi: 10.1016/j.jbiotec.2007.12.013. Epub 2008 Jan 20.

PMID:
18304669
40.

Complete genome sequence of the myxobacterium Sorangium cellulosum.

Schneiker S, Perlova O, Kaiser O, Gerth K, Alici A, Altmeyer MO, Bartels D, Bekel T, Beyer S, Bode E, Bode HB, Bolten CJ, Choudhuri JV, Doss S, Elnakady YA, Frank B, Gaigalat L, Goesmann A, Groeger C, Gross F, Jelsbak L, Jelsbak L, Kalinowski J, Kegler C, Knauber T, Konietzny S, Kopp M, Krause L, Krug D, Linke B, Mahmud T, Martinez-Arias R, McHardy AC, Merai M, Meyer F, Mormann S, Muñoz-Dorado J, Perez J, Pradella S, Rachid S, Raddatz G, Rosenau F, Rückert C, Sasse F, Scharfe M, Schuster SC, Suen G, Treuner-Lange A, Velicer GJ, Vorhölter FJ, Weissman KJ, Welch RD, Wenzel SC, Whitworth DE, Wilhelm S, Wittmann C, Blöcker H, Pühler A, Müller R.

Nat Biotechnol. 2007 Nov;25(11):1281-9. Epub 2007 Oct 28.

PMID:
17965706
41.

Complete genome of the mutualistic, N2-fixing grass endophyte Azoarcus sp. strain BH72.

Krause A, Ramakumar A, Bartels D, Battistoni F, Bekel T, Boch J, Böhm M, Friedrich F, Hurek T, Krause L, Linke B, McHardy AC, Sarkar A, Schneiker S, Syed AA, Thauer R, Vorhölter FJ, Weidner S, Pühler A, Reinhold-Hurek B, Kaiser O, Goesmann A.

Nat Biotechnol. 2006 Nov;24(11):1385-91. Epub 2006 Oct 22. Erratum in: Nat Biotechnol. 2007 Apr;25(4):478.

PMID:
17057704
42.

Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis.

Schneiker S, Martins dos Santos VA, Bartels D, Bekel T, Brecht M, Buhrmester J, Chernikova TN, Denaro R, Ferrer M, Gertler C, Goesmann A, Golyshina OV, Kaminski F, Khachane AN, Lang S, Linke B, McHardy AC, Meyer F, Nechitaylo T, Pühler A, Regenhardt D, Rupp O, Sabirova JS, Selbitschka W, Yakimov MM, Timmis KN, Vorhölter FJ, Weidner S, Kaiser O, Golyshin PN.

Nat Biotechnol. 2006 Aug;24(8):997-1004. Epub 2006 Jul 30.

PMID:
16878126
43.

The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic properties.

Gaillard M, Vallaeys T, Vorhölter FJ, Minoia M, Werlen C, Sentchilo V, Pühler A, van der Meer JR.

J Bacteriol. 2006 Mar;188(5):1999-2013.

44.

Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence.

Thieme F, Koebnik R, Bekel T, Berger C, Boch J, Büttner D, Caldana C, Gaigalat L, Goesmann A, Kay S, Kirchner O, Lanz C, Linke B, McHardy AC, Meyer F, Mittenhuber G, Nies DH, Niesbach-Klösgen U, Patschkowski T, Rückert C, Rupp O, Schneiker S, Schuster SC, Vorhölter FJ, Weber E, Pühler A, Bonas U, Bartels D, Kaiser O.

J Bacteriol. 2005 Nov;187(21):7254-66.

45.

Comparison of two Xanthomonas campestris pathovar campestris genomes revealed differences in their gene composition.

Vorhölter FJ, Thias T, Meyer F, Bekel T, Kaiser O, Pühler A, Niehaus K.

J Biotechnol. 2003 Dec 19;106(2-3):193-202.

PMID:
14651861
47.

The complete sequence of the 1,683-kb pSymB megaplasmid from the N2-fixing endosymbiont Sinorhizobium meliloti.

Finan TM, Weidner S, Wong K, Buhrmester J, Chain P, Vorhölter FJ, Hernandez-Lucas I, Becker A, Cowie A, Gouzy J, Golding B, Pühler A.

Proc Natl Acad Sci U S A. 2001 Aug 14;98(17):9889-94. Epub 2001 Jul 31.

48.

The composite genome of the legume symbiont Sinorhizobium meliloti.

Galibert F, Finan TM, Long SR, Puhler A, Abola P, Ampe F, Barloy-Hubler F, Barnett MJ, Becker A, Boistard P, Bothe G, Boutry M, Bowser L, Buhrmester J, Cadieu E, Capela D, Chain P, Cowie A, Davis RW, Dreano S, Federspiel NA, Fisher RF, Gloux S, Godrie T, Goffeau A, Golding B, Gouzy J, Gurjal M, Hernandez-Lucas I, Hong A, Huizar L, Hyman RW, Jones T, Kahn D, Kahn ML, Kalman S, Keating DH, Kiss E, Komp C, Lelaure V, Masuy D, Palm C, Peck MC, Pohl TM, Portetelle D, Purnelle B, Ramsperger U, Surzycki R, Thebault P, Vandenbol M, Vorholter FJ, Weidner S, Wells DH, Wong K, Yeh KC, Batut J.

Science. 2001 Jul 27;293(5530):668-72.

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