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Items: 45

1.

Aphid resistance in Capsicum maps to a locus containing LRR-RLK gene analogues.

Sun M, Voorrips RE, Van't Westende W, van Kaauwen M, Visser RGF, Vosman B.

Theor Appl Genet. 2019 Oct 8. doi: 10.1007/s00122-019-03453-7. [Epub ahead of print]

PMID:
31595336
2.

Quantifying the Power and Precision of QTL Analysis in Autopolyploids Under Bivalent and Multivalent Genetic Models.

Bourke PM, Hackett CA, Voorrips RE, Visser RGF, Maliepaard C.

G3 (Bethesda). 2019 Jul 9;9(7):2107-2122. doi: 10.1534/g3.119.400269.

3.

FitTetra 2.0 - improved genotype calling for tetraploids with multiple population and parental data support.

Zych K, Gort G, Maliepaard CA, Jansen RC, Voorrips RE.

BMC Bioinformatics. 2019 Mar 20;20(1):148. doi: 10.1186/s12859-019-2703-y.

4.

polymapR-linkage analysis and genetic map construction from F1 populations of outcrossing polyploids.

Bourke PM, van Geest G, Voorrips RE, Jansen J, Kranenburg T, Shahin A, Visser RGF, Arens P, Smulders MJM, Maliepaard C.

Bioinformatics. 2019 Feb 1;35(3):540. doi: 10.1093/bioinformatics/bty1002. No abstract available.

5.

QTL mapping of insect resistance components of Solanum galapagense.

Vosman B, Kashaninia A, Van't Westende W, Meijer-Dekens F, van Eekelen H, Visser RGF, de Vos RCH, Voorrips RE.

Theor Appl Genet. 2019 Feb;132(2):531-541. doi: 10.1007/s00122-018-3239-7. Epub 2018 Nov 23.

6.

Combining QTL mapping with transcriptome and metabolome profiling reveals a possible role for ABA signaling in resistance against the cabbage whitefly in cabbage.

Broekgaarden C, Pelgrom KTB, Bucher J, van Dam NM, Grosser K, Pieterse CMJ, van Kaauwen M, Steenhuis G, Voorrips RE, de Vos M, Vosman B, Worrich A, van Wees SCM.

PLoS One. 2018 Nov 6;13(11):e0206103. doi: 10.1371/journal.pone.0206103. eCollection 2018.

7.

Aphid populations showing differential levels of virulence on Capsicum accessions.

Sun M, Voorrips RE, Vosman B.

Insect Sci. 2018 Oct 23. doi: 10.1111/1744-7917.12648. [Epub ahead of print]

PMID:
30353689
8.

Multi-environment QTL analysis of plant and flower morphological traits in tetraploid rose.

Bourke PM, Gitonga VW, Voorrips RE, Visser RGF, Krens FA, Maliepaard C.

Theor Appl Genet. 2018 Oct;131(10):2055-2069. doi: 10.1007/s00122-018-3132-4. Epub 2018 Jun 30.

9.

Reduced phloem uptake of Myzus persicae on an aphid resistant pepper accession.

Sun M, Voorrips RE, Steenhuis-Broers G, Van't Westende W, Vosman B.

BMC Plant Biol. 2018 Jun 27;18(1):138. doi: 10.1186/s12870-018-1340-3.

10.

A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits.

Hibrand Saint-Oyant L, Ruttink T, Hamama L, Kirov I, Lakhwani D, Zhou NN, Bourke PM, Daccord N, Leus L, Schulz D, Van de Geest H, Hesselink T, Van Laere K, Debray K, Balzergue S, Thouroude T, Chastellier A, Jeauffre J, Voisine L, Gaillard S, Borm TJA, Arens P, Voorrips RE, Maliepaard C, Neu E, Linde M, Le Paslier MC, Bérard A, Bounon R, Clotault J, Choisne N, Quesneville H, Kawamura K, Aubourg S, Sakr S, Smulders MJM, Schijlen E, Bucher E, Debener T, De Riek J, Foucher F.

Nat Plants. 2018 Jul;4(7):473-484. doi: 10.1038/s41477-018-0166-1. Epub 2018 Jun 11.

11.

polymapR-linkage analysis and genetic map construction from F1 populations of outcrossing polyploids.

Bourke PM, van Geest G, Voorrips RE, Jansen J, Kranenburg T, Shahin A, Visser RGF, Arens P, Smulders MJM, Maliepaard C.

Bioinformatics. 2018 Oct 15;34(20):3496-3502. doi: 10.1093/bioinformatics/bty371. Erratum in: Bioinformatics. 2019 Feb 1;35(3):540.

12.

Tools for Genetic Studies in Experimental Populations of Polyploids.

Bourke PM, Voorrips RE, Visser RGF, Maliepaard C.

Front Plant Sci. 2018 Apr 18;9:513. doi: 10.3389/fpls.2018.00513. eCollection 2018. Review.

13.

Broad spectrum insect resistance and metabolites in close relatives of the cultivated tomato.

Vosman B, Van't Westende WPC, Henken B, van Eekelen HDLM, de Vos RCH, Voorrips RE.

Euphytica. 2018;214(3):46. doi: 10.1007/s10681-018-2124-4. Epub 2018 Feb 6.

14.

An ultra-dense integrated linkage map for hexaploid chrysanthemum enables multi-allelic QTL analysis.

van Geest G, Bourke PM, Voorrips RE, Marasek-Ciolakowska A, Liao Y, Post A, van Meeteren U, Visser RGF, Maliepaard C, Arens P.

Theor Appl Genet. 2017 Dec;130(12):2527-2541. doi: 10.1007/s00122-017-2974-5. Epub 2017 Aug 29.

15.

Conclusive evidence for hexasomic inheritance in chrysanthemum based on analysis of a 183 k SNP array.

van Geest G, Voorrips RE, Esselink D, Post A, Visser RG, Arens P.

BMC Genomics. 2017 Aug 7;18(1):585. doi: 10.1186/s12864-017-4003-0.

16.

Partial preferential chromosome pairing is genotype dependent in tetraploid rose.

Bourke PM, Arens P, Voorrips RE, Esselink GD, Koning-Boucoiran CF, Van't Westende WP, Santos Leonardo T, Wissink P, Zheng C, van Geest G, Visser RG, Krens FA, Smulders MJ, Maliepaard C.

Plant J. 2017 Apr;90(2):330-343. doi: 10.1111/tpj.13496. Epub 2017 Mar 20. Erratum in: Plant J. 2019 Feb;97(3):616.

17.

Genome-Wide Association Analysis of the Anthocyanin and Carotenoid Contents of Rose Petals.

Schulz DF, Schott RT, Voorrips RE, Smulders MJ, Linde M, Debener T.

Front Plant Sci. 2016 Dec 6;7:1798. doi: 10.3389/fpls.2016.01798. eCollection 2016.

18.

A high-density, multi-parental SNP genetic map on apple validates a new mapping approach for outcrossing species.

Di Pierro EA, Gianfranceschi L, Di Guardo M, Koehorst-van Putten HJ, Kruisselbrink JW, Longhi S, Troggio M, Bianco L, Muranty H, Pagliarani G, Tartarini S, Letschka T, Lozano Luis L, Garkava-Gustavsson L, Micheletti D, Bink MC, Voorrips RE, Aziz E, Velasco R, Laurens F, van de Weg WE.

Hortic Res. 2016 Nov 23;3:16057. eCollection 2016.

19.

High-density SNP-based genetic maps for the parents of an outcrossed and a selfed tetraploid garden rose cross, inferred from admixed progeny using the 68k rose SNP array.

Vukosavljev M, Arens P, Voorrips RE, van 't Westende WP, Esselink GD, Bourke PM, Cox P, van de Weg WE, Visser RG, Maliepaard C, Smulders MJ.

Hortic Res. 2016 Oct 26;3:16052. eCollection 2016.

20.

Integrating haplotype-specific linkage maps in tetraploid species using SNP markers.

Bourke PM, Voorrips RE, Kranenburg T, Jansen J, Visser RG, Maliepaard C.

Theor Appl Genet. 2016 Nov;129(11):2211-2226. Epub 2016 Aug 25.

21.

Evaluation of LD decay and various LD-decay estimators in simulated and SNP-array data of tetraploid potato.

Vos PG, Paulo MJ, Voorrips RE, Visser RG, van Eck HJ, van Eeuwijk FA.

Theor Appl Genet. 2017 Jan;130(1):123-135. doi: 10.1007/s00122-016-2798-8. Epub 2016 Oct 3.

22.

PediHaplotyper: software for consistent assignment of marker haplotypes in pedigrees.

Voorrips RE, Bink MC, Kruisselbrink JW, Koehorst-van Putten HJ, van de Weg WE.

Mol Breed. 2016;36:119. Epub 2016 Aug 8.

23.

Population structure and genome-wide association analysis for frost tolerance in oat using continuous SNP array signal intensity ratios.

Tumino G, Voorrips RE, Rizza F, Badeck FW, Morcia C, Ghizzoni R, Germeier CU, Paulo MJ, Terzi V, Smulders MJ.

Theor Appl Genet. 2016 Sep;129(9):1711-24. doi: 10.1007/s00122-016-2734-y. Epub 2016 Jun 18.

24.

Probabilistic Multilocus Haplotype Reconstruction in Outcrossing Tetraploids.

Zheng C, Voorrips RE, Jansen J, Hackett CA, Ho J, Bink MC.

Genetics. 2016 May;203(1):119-31. doi: 10.1534/genetics.115.185579. Epub 2016 Feb 26.

25.

Novel Genes Affecting the Interaction between the Cabbage Whitefly and Arabidopsis Uncovered by Genome-Wide Association Mapping.

Broekgaarden C, Bucher J, Bac-Molenaar J, Keurentjes JJ, Kruijer W, Voorrips RE, Vosman B.

PLoS One. 2015 Dec 23;10(12):e0145124. doi: 10.1371/journal.pone.0145124. eCollection 2015.

26.

The Double-Reduction Landscape in Tetraploid Potato as Revealed by a High-Density Linkage Map.

Bourke PM, Voorrips RE, Visser RG, Maliepaard C.

Genetics. 2015 Nov;201(3):853-63. doi: 10.1534/genetics.115.181008. Epub 2015 Sep 15. Erratum in: Genetics. 2016 May;203(1):611.

27.

Development and analysis of a 20K SNP array for potato (Solanum tuberosum): an insight into the breeding history.

Vos PG, Uitdewilligen JG, Voorrips RE, Visser RG, van Eck HJ.

Theor Appl Genet. 2015 Dec;128(12):2387-401. doi: 10.1007/s00122-015-2593-y. Epub 2015 Aug 12.

28.

QTL mapping of thrips resistance in pepper.

Maharijaya A, Vosman B, Steenhuis-Broers G, Pelgrom K, Purwito A, Visser RG, Voorrips RE.

Theor Appl Genet. 2015 Oct;128(10):1945-56. doi: 10.1007/s00122-015-2558-1. Epub 2015 Jul 8.

29.

Using RNA-Seq to assemble a rose transcriptome with more than 13,000 full-length expressed genes and to develop the WagRhSNP 68k Axiom SNP array for rose (Rosa L.).

Koning-Boucoiran CF, Esselink GD, Vukosavljev M, van 't Westende WP, Gitonga VW, Krens FA, Voorrips RE, van de Weg WE, Schulz D, Debener T, Maliepaard C, Arens P, Smulders MJ.

Front Plant Sci. 2015 Apr 21;6:249. doi: 10.3389/fpls.2015.00249. eCollection 2015.

30.

Bayesian QTL analyses using pedigreed families of an outcrossing species, with application to fruit firmness in apple.

Bink MC, Jansen J, Madduri M, Voorrips RE, Durel CE, Kouassi AB, Laurens F, Mathis F, Gessler C, Gobbin D, Rezzonico F, Patocchi A, Kellerhals M, Boudichevskaia A, Dunemann F, Peil A, Nowicka A, Lata B, Stankiewicz-Kosyl M, Jeziorek K, Pitera E, Soska A, Tomala K, Evans KM, Fernández-Fernández F, Guerra W, Korbin M, Keller S, Lewandowski M, Plocharski W, Rutkowski K, Zurawicz E, Costa F, Sansavini S, Tartarini S, Komjanc M, Mott D, Antofie A, Lateur M, Rondia A, Gianfranceschi L, van de Weg WE.

Theor Appl Genet. 2014 May;127(5):1073-90. doi: 10.1007/s00122-014-2281-3. Epub 2014 Feb 25.

PMID:
24567047
31.

Genetic mapping of semi-polar metabolites in pepper fruits (Capsicum sp.): towards unravelling the molecular regulation of flavonoid quantitative trait loci.

Wahyuni Y, Stahl-Hermes V, Ballester AR, de Vos RC, Voorrips RE, Maharijaya A, Molthoff J, Zamora MV, Sudarmonowati E, Arisi AC, Bino RJ, Bovy AG.

Mol Breed. 2014;33:503-518. Epub 2013 Oct 23.

32.

Pedimap: software for the visualization of genetic and phenotypic data in pedigrees.

Voorrips RE, Bink MC, van de Weg WE.

J Hered. 2012 Nov-Dec;103(6):903-7. doi: 10.1093/jhered/ess060. Epub 2012 Oct 19.

33.

The simulation of meiosis in diploid and tetraploid organisms using various genetic models.

Voorrips RE, Maliepaard CA.

BMC Bioinformatics. 2012 Sep 26;13:248. doi: 10.1186/1471-2105-13-248.

34.

Parthenocarpic potential in Capsicum annuum L. is enhanced by carpelloid structures and controlled by a single recessive gene.

Tiwari A, Vivian-Smith A, Voorrips RE, Habets ME, Xue LB, Offringa R, Heuvelink EP.

BMC Plant Biol. 2011 Oct 21;11:143. doi: 10.1186/1471-2229-11-143.

35.

Genotype calling in tetraploid species from bi-allelic marker data using mixture models.

Voorrips RE, Gort G, Vosman B.

BMC Bioinformatics. 2011 May 19;12:172. doi: 10.1186/1471-2105-12-172.

36.

Intraspecific variation in herbivore community composition and transcriptional profiles in field-grown Brassica oleracea cultivars.

Broekgaarden C, Poelman EH, Voorrips RE, Dicke M, Vosman B.

J Exp Bot. 2010 Mar;61(3):807-19. doi: 10.1093/jxb/erp347. Epub 2009 Nov 24.

37.

Large-scale identification of polymorphic microsatellites using an in silico approach.

Tang J, Baldwin SJ, Jacobs JM, Linden CG, Voorrips RE, Leunissen JA, van Eck H, Vosman B.

BMC Bioinformatics. 2008 Sep 15;9:374. doi: 10.1186/1471-2105-9-374.

38.

Responses of Brassica oleracea cultivars to infestation by the aphid Brevicoryne brassicae: an ecological and molecular approach.

Broekgaarden C, Poelman EH, Steenhuis G, Voorrips RE, Dicke M, Vosman B.

Plant Cell Environ. 2008 Nov;31(11):1592-605. doi: 10.1111/j.1365-3040.2008.01871.x. Epub 2008 Aug 19.

39.

HaploSNPer: a web-based allele and SNP detection tool.

Tang J, Leunissen JA, Voorrips RE, van der Linden CG, Vosman B.

BMC Genet. 2008 Feb 28;9:23. doi: 10.1186/1471-2156-9-23.

40.

Genotypic variation in genome-wide transcription profiles induced by insect feeding: Brassica oleracea--Pieris rapae interactions.

Broekgaarden C, Poelman EH, Steenhuis G, Voorrips RE, Dicke M, Vosman B.

BMC Genomics. 2007 Jul 17;8:239.

41.

QTL identification for early blight resistance (Alternaria solani) in a Solanum lycopersicum x S. arcanum cross.

Chaerani R, Smulders MJ, van der Linden CG, Vosman B, Stam P, Voorrips RE.

Theor Appl Genet. 2007 Feb;114(3):439-50. Epub 2006 Nov 9.

PMID:
17093974
42.

QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species.

Tang J, Vosman B, Voorrips RE, van der Linden CG, Leunissen JA.

BMC Bioinformatics. 2006 Oct 9;7:438.

43.

QTL mapping of anthracnose ( Colletotrichum spp.) resistance in a cross between Capsicum annuum and C. chinense.

Voorrips RE, Finkers R, Sanjaya L, Groenwold R.

Theor Appl Genet. 2004 Oct;109(6):1275-82. Epub 2004 Aug 12.

PMID:
15309301
44.

MapChart: software for the graphical presentation of linkage maps and QTLs.

Voorrips RE.

J Hered. 2002 Jan-Feb;93(1):77-8. No abstract available.

PMID:
12011185
45.

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