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Items: 1 to 50 of 99

1.

Engineered integrative and conjugative elements for efficient and inducible DNA transfer to undomesticated bacteria.

Brophy JAN, Triassi AJ, Adams BL, Renberg RL, Stratis-Cullum DN, Grossman AD, Voigt CA.

Nat Microbiol. 2018 Sep;3(9):1043-1053. doi: 10.1038/s41564-018-0216-5. Epub 2018 Aug 20.

PMID:
30127494
2.

Deep learning to predict the lab-of-origin of engineered DNA.

Nielsen AAK, Voigt CA.

Nat Commun. 2018 Aug 7;9(1):3135. doi: 10.1038/s41467-018-05378-z.

3.

Iterative algorithm-guided design of massive strain libraries, applied to itaconic acid production in yeast.

Young EM, Zhao Z, Gielesen BEM, Wu L, Benjamin Gordon D, Roubos JA, Voigt CA.

Metab Eng. 2018 Jul;48:33-43. doi: 10.1016/j.ymben.2018.05.002. Epub 2018 May 9.

PMID:
29753070
4.

Engineered promoters enable constant gene expression at any copy number in bacteria.

Segall-Shapiro TH, Sontag ED, Voigt CA.

Nat Biotechnol. 2018 Apr;36(4):352-358. doi: 10.1038/nbt.4111. Epub 2018 Mar 19.

PMID:
29553576
5.

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0.

Cox RS, Madsen C, McLaughlin J, Nguyen T, Roehner N, Bartley B, Bhatia S, Bissell M, Clancy K, Gorochowski T, Grünberg R, Luna A, Le Novère N, Pocock M, Sauro H, Sexton JT, Stan GB, Tabor JJ, Voigt CA, Zundel Z, Myers C, Beal J, Wipat A.

J Integr Bioinform. 2018 Mar 19;15(1). pii: /j/jib.2018.15.issue-1/jib-2017-0074/jib-2017-0074.xml. doi: 10.1515/jib-2017-0074.

6.

Toward an orthogonal central dogma.

Liu CC, Jewett MC, Chin JW, Voigt CA.

Nat Chem Biol. 2018 Jan 16;14(2):103-106. doi: 10.1038/nchembio.2554. No abstract available.

PMID:
29337969
7.

Genetic circuit characterization and debugging using RNA-seq.

Gorochowski TE, Espah Borujeni A, Park Y, Nielsen AA, Zhang J, Der BS, Gordon DB, Voigt CA.

Mol Syst Biol. 2017 Nov 9;13(11):952. doi: 10.15252/msb.20167461.

8.

Genetic Design via Combinatorial Constraint Specification.

Bhatia SP, Smanski MJ, Voigt CA, Densmore DM.

ACS Synth Biol. 2017 Nov 17;6(11):2130-2135. doi: 10.1021/acssynbio.7b00154. Epub 2017 Oct 4.

PMID:
28874044
9.

Balancing gene expression without library construction via a reusable sRNA pool.

Ghodasara A, Voigt CA.

Nucleic Acids Res. 2017 Jul 27;45(13):8116-8127. doi: 10.1093/nar/gkx530.

10.

Engineering RGB color vision into Escherichia coli.

Fernandez-Rodriguez J, Moser F, Song M, Voigt CA.

Nat Chem Biol. 2017 Jul;13(7):706-708. doi: 10.1038/nchembio.2390. Epub 2017 May 22.

PMID:
28530708
11.

Control of type III protein secretion using a minimal genetic system.

Song M, Sukovich DJ, Ciccarelli L, Mayr J, Fernandez-Rodriguez J, Mirsky EA, Tucker AC, Gordon DB, Marlovits TC, Voigt CA.

Nat Commun. 2017 May 9;8:14737. doi: 10.1038/ncomms14737.

12.

Formation of Nitrogenase NifDK Tetramers in the Mitochondria of Saccharomyces cerevisiae.

Burén S, Young EM, Sweeny EA, Lopez-Torrejón G, Veldhuizen M, Voigt CA, Rubio LM.

ACS Synth Biol. 2017 Jun 16;6(6):1043-1055. doi: 10.1021/acssynbio.6b00371. Epub 2017 Mar 3.

13.

Discovery of Reactive Microbiota-Derived Metabolites that Inhibit Host Proteases.

Guo CJ, Chang FY, Wyche TP, Backus KM, Acker TM, Funabashi M, Taketani M, Donia MS, Nayfach S, Pollard KS, Craik CS, Cravatt BF, Clardy J, Voigt CA, Fischbach MA.

Cell. 2017 Jan 26;168(3):517-526.e18. doi: 10.1016/j.cell.2016.12.021. Epub 2017 Jan 19.

14.

Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration.

Woodruff LBA, Gorochowski TE, Roehner N, Mikkelsen TS, Densmore D, Gordon DB, Nicol R, Voigt CA.

Nucleic Acids Res. 2017 Feb 17;45(3):1567-1568. doi: 10.1093/nar/gkx032. No abstract available.

15.

Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration.

Woodruff LBA, Gorochowski TE, Roehner N, Mikkelsen TS, Densmore D, Gordon DB, Nicol R, Voigt CA.

Nucleic Acids Res. 2017 Feb 17;45(3):1553-1565. doi: 10.1093/nar/gkw1226. Erratum in: Nucleic Acids Res. 2017 Feb 17;45(3):1567-1568.

16.

Molecular Keys to the Janthinobacterium and Duganella spp. Interaction with the Plant Pathogen Fusarium graminearum.

Haack FS, Poehlein A, Kröger C, Voigt CA, Piepenbring M, Bode HB, Daniel R, Schäfer W, Streit WR.

Front Microbiol. 2016 Oct 26;7:1668. eCollection 2016.

17.

DNAplotlib: Programmable Visualization of Genetic Designs and Associated Data.

Der BS, Glassey E, Bartley BA, Enghuus C, Goodman DB, Gordon DB, Voigt CA, Gorochowski TE.

ACS Synth Biol. 2017 Jul 21;6(7):1115-1119. doi: 10.1021/acssynbio.6b00252. Epub 2016 Oct 27.

PMID:
27744689
18.

Cellulose/callose glucan networks: the key to powdery mildew resistance in plants?

Voigt CA.

New Phytol. 2016 Oct;212(2):303-5. doi: 10.1111/nph.14198. No abstract available.

19.

Cellulose and callose synthesis and organization in focus, what's new?

Schneider R, Hanak T, Persson S, Voigt CA.

Curr Opin Plant Biol. 2016 Dec;34:9-16. doi: 10.1016/j.pbi.2016.07.007. Epub 2016 Jul 29. Review.

20.

Post-translational control of genetic circuits using Potyvirus proteases.

Fernandez-Rodriguez J, Voigt CA.

Nucleic Acids Res. 2016 Jul 27;44(13):6493-502. doi: 10.1093/nar/gkw537. Epub 2016 Jun 13.

21.

Programming a Human Commensal Bacterium, Bacteroides thetaiotaomicron, to Sense and Respond to Stimuli in the Murine Gut Microbiota.

Mimee M, Tucker AC, Voigt CA, Lu TK.

Cell Syst. 2016 Mar 23;2(3):214. doi: 10.1016/j.cels.2016.03.007. Epub 2016 Mar 23. No abstract available.

22.

Double Dutch: A Tool for Designing Combinatorial Libraries of Biological Systems.

Roehner N, Young EM, Voigt CA, Gordon DB, Densmore D.

ACS Synth Biol. 2016 Jun 17;5(6):507-17. doi: 10.1021/acssynbio.5b00232. Epub 2016 May 3.

PMID:
27110633
23.

Genetic encoding of DNA nanostructures and their self-assembly in living bacteria.

Elbaz J, Yin P, Voigt CA.

Nat Commun. 2016 Apr 19;7:11179. doi: 10.1038/ncomms11179.

24.

Symbiotic Nitrogen Fixation and the Challenges to Its Extension to Nonlegumes.

Mus F, Crook MB, Garcia K, Garcia Costas A, Geddes BA, Kouri ED, Paramasivan P, Ryu MH, Oldroyd GED, Poole PS, Udvardi MK, Voigt CA, Ané JM, Peters JW.

Appl Environ Microbiol. 2016 Jun 13;82(13):3698-3710. doi: 10.1128/AEM.01055-16. Print 2016 Jul 1. Review.

25.

Genetic circuit design automation.

Nielsen AA, Der BS, Shin J, Vaidyanathan P, Paralanov V, Strychalski EA, Ross D, Densmore D, Voigt CA.

Science. 2016 Apr 1;352(6281):aac7341. doi: 10.1126/science.aac7341.

27.

Synthetic biology to access and expand nature's chemical diversity.

Smanski MJ, Zhou H, Claesen J, Shen B, Fischbach MA, Voigt CA.

Nat Rev Microbiol. 2016 Mar;14(3):135-49. doi: 10.1038/nrmicro.2015.24. Review.

28.

Antisense transcription as a tool to tune gene expression.

Brophy JA, Voigt CA.

Mol Syst Biol. 2016 Jan 14;12(1):854. doi: 10.15252/msb.20156540.

29.

DNA Assembly in 3D Printed Fluidics.

Patrick WG, Nielsen AA, Keating SJ, Levy TJ, Wang CW, Rivera JJ, Mondragón-Palomino O, Carr PA, Voigt CA, Oxman N, Kong DS.

PLoS One. 2015 Dec 30;10(12):e0143636. doi: 10.1371/journal.pone.0143636. eCollection 2015.

30.

Memory and Combinatorial Logic Based on DNA Inversions: Dynamics and Evolutionary Stability.

Fernandez-Rodriguez J, Yang L, Gorochowski TE, Gordon DB, Voigt CA.

ACS Synth Biol. 2015 Dec 18;4(12):1361-72. doi: 10.1021/acssynbio.5b00170. Epub 2015 Nov 24.

PMID:
26548807
31.

Algorithmic co-optimization of genetic constructs and growth conditions: application to 6-ACA, a potential nylon-6 precursor.

Zhou H, Vonk B, Roubos JA, Bovenberg RA, Voigt CA.

Nucleic Acids Res. 2015 Dec 2;43(21):10560-70. doi: 10.1093/nar/gkv1071. Epub 2015 Oct 30.

32.

Glucanocellulosic ethanol: the undiscovered biofuel potential in energy crops and marine biomass.

Falter C, Zwikowics C, Eggert D, Blümke A, Naumann M, Wolff K, Ellinger D, Reimer R, Voigt CA.

Sci Rep. 2015 Sep 1;5:13722. doi: 10.1038/srep13722.

33.

Targeted DNA degradation using a CRISPR device stably carried in the host genome.

Caliando BJ, Voigt CA.

Nat Commun. 2015 May 19;6:6989. doi: 10.1038/ncomms7989.

34.

Simple preparation of plant epidermal tissue for laser microdissection and downstream quantitative proteome and carbohydrate analysis.

Falter C, Ellinger D, von Hülsen B, Heim R, Voigt CA.

Front Plant Sci. 2015 Mar 27;6:194. doi: 10.3389/fpls.2015.00194. eCollection 2015.

35.

Resistance of callose synthase activity to free fatty acid inhibition as an indicator of Fusarium head blight resistance in wheat.

Ellinger D, Sode B, Falter C, Voigt CA.

Plant Signal Behav. 2014;9(7):e28982. doi: 10.4161/psb.28982.

36.

Use of plant colonizing bacteria as chassis for transfer of N₂-fixation to cereals.

Geddes BA, Ryu MH, Mus F, Garcia Costas A, Peters JW, Voigt CA, Poole P.

Curr Opin Biotechnol. 2015 Apr;32:216-222. doi: 10.1016/j.copbio.2015.01.004. Epub 2015 Jan 24. Review.

PMID:
25626166
37.

Multi-input CRISPR/Cas genetic circuits that interface host regulatory networks.

Nielsen AA, Voigt CA.

Mol Syst Biol. 2014 Nov 24;10:763. doi: 10.15252/msb.20145735.

38.

Functional optimization of gene clusters by combinatorial design and assembly.

Smanski MJ, Bhatia S, Zhao D, Park Y, B A Woodruff L, Giannoukos G, Ciulla D, Busby M, Calderon J, Nicol R, Gordon DB, Densmore D, Voigt CA.

Nat Biotechnol. 2014 Dec;32(12):1241-9. doi: 10.1038/nbt.3063. Epub 2014 Nov 24.

PMID:
25419741
39.

Systematic transfer of prokaryotic sensors and circuits to mammalian cells.

Stanton BC, Siciliano V, Ghodasara A, Wroblewska L, Clancy K, Trefzer AC, Chesnut JD, Weiss R, Voigt CA.

ACS Synth Biol. 2014 Dec 19;3(12):880-91. doi: 10.1021/sb5002856. Epub 2014 Nov 20.

40.

Permanent genetic memory with >1-byte capacity.

Yang L, Nielsen AA, Fernandez-Rodriguez J, McClune CJ, Laub MT, Lu TK, Voigt CA.

Nat Methods. 2014 Dec;11(12):1261-6. doi: 10.1038/nmeth.3147. Epub 2014 Oct 26.

41.

Reduced susceptibility to Fusarium head blight in Brachypodium distachyon through priming with the Fusarium mycotoxin deoxynivalenol.

Blümke A, Sode B, Ellinger D, Voigt CA.

Mol Plant Pathol. 2015 Jun;16(5):472-83. doi: 10.1111/mpp.12203. Epub 2014 Oct 22.

42.
43.

A 'resource allocator' for transcription based on a highly fragmented T7 RNA polymerase.

Segall-Shapiro TH, Meyer AJ, Ellington AD, Sontag ED, Voigt CA.

Mol Syst Biol. 2014 Jul 30;10:742. doi: 10.15252/msb.20145299.

44.

Interaction of the Arabidopsis GTPase RabA4c with its effector PMR4 results in complete penetration resistance to powdery mildew.

Ellinger D, Glöckner A, Koch J, Naumann M, Stürtz V, Schütt K, Manisseri C, Somerville SC, Voigt CA.

Plant Cell. 2014 Jul;26(7):3185-200. doi: 10.1105/tpc.114.127779. Epub 2014 Jul 23.

45.

The use of nanoscale fluorescence microscopic to decipher cell wall modifications during fungal penetration.

Ellinger D, Voigt CA.

Front Plant Sci. 2014 Jun 18;5:270. doi: 10.3389/fpls.2014.00270. eCollection 2014.

46.

Callose biosynthesis in Arabidopsis with a focus on pathogen response: what we have learned within the last decade.

Ellinger D, Voigt CA.

Ann Bot. 2014 Oct;114(6):1349-58. doi: 10.1093/aob/mcu120. Epub 2014 Jul 1. Review.

47.

Callose-mediated resistance to pathogenic intruders in plant defense-related papillae.

Voigt CA.

Front Plant Sci. 2014 Apr 28;5:168. doi: 10.3389/fpls.2014.00168. eCollection 2014.

48.

Principles of genetic circuit design.

Brophy JA, Voigt CA.

Nat Methods. 2014 May;11(5):508-20. doi: 10.1038/nmeth.2926. Review.

49.

Resistance of callose synthase activity to free fatty acid inhibition as an indicator of Fusarium head blight resistance in wheat.

Ellinger D, Sode B, Falter C, Voigt CA.

Plant Signal Behav. 2014 Apr 29;9. pii: e28982. [Epub ahead of print]

PMID:
24781155
50.

Secreted fungal effector lipase releases free fatty acids to inhibit innate immunity-related callose formation during wheat head infection.

Blümke A, Falter C, Herrfurth C, Sode B, Bode R, Schäfer W, Feussner I, Voigt CA.

Plant Physiol. 2014 May;165(1):346-58. doi: 10.1104/pp.114.236737. Epub 2014 Mar 31.

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