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Items: 13

1.

Evolution of intron splicing towards optimized gene expression is based on various Cis- and Trans-molecular mechanisms.

Frumkin I, Yofe I, Bar-Ziv R, Gurvich Y, Lu YY, Voichek Y, Towers R, Schirman D, Krebber H, Pilpel Y.

PLoS Biol. 2019 Aug 23;17(8):e3000423. doi: 10.1371/journal.pbio.3000423. eCollection 2019 Aug.

2.

Epigenetic Control of Expression Homeostasis during Replication Is Stabilized by the Replication Checkpoint.

Voichek Y, Mittelman K, Gordon Y, Bar-Ziv R, Lifshitz Smit D, Shenhav R, Barkai N.

Mol Cell. 2018 Jun 21;70(6):1121-1133.e9. doi: 10.1016/j.molcel.2018.05.015. Epub 2018 Jun 14.

3.

Combining Deep Sequencing, Proteomics, Phosphoproteomics, and Functional Screens To Discover Novel Regulators of Sphingolipid Homeostasis.

Lebesgue N, Megyeri M, Cristobal A, Scholten A, Chuartzman SG, Voichek Y, Scheltema RA, Mohammed S, Futerman AH, Schuldiner M, Heck AJ, Lemeer S.

J Proteome Res. 2017 Feb 3;16(2):571-582. doi: 10.1021/acs.jproteome.6b00691. Epub 2016 Nov 29.

PMID:
28152593
4.

Dealing with Gene-Dosage Imbalance during S Phase.

Bar-Ziv R, Voichek Y, Barkai N.

Trends Genet. 2016 Nov;32(11):717-723. doi: 10.1016/j.tig.2016.08.006. Epub 2016 Aug 26. Review.

PMID:
27575299
5.

A role for Rtt109 in buffering gene-dosage imbalance during DNA replication.

Voichek Y, Bar-Ziv R, Barkai N.

Nucleus. 2016 Jul 3;7(4):375-81. doi: 10.1080/19491034.2016.1216743. Review.

6.

Chromatin dynamics during DNA replication.

Bar-Ziv R, Voichek Y, Barkai N.

Genome Res. 2016 Sep;26(9):1245-56. doi: 10.1101/gr.201244.115. Epub 2016 May 25.

7.

Expression homeostasis during DNA replication.

Voichek Y, Bar-Ziv R, Barkai N.

Science. 2016 Mar 4;351(6277):1087-90. doi: 10.1126/science.aad1162.

8.

Simultaneous measurement of genome-wide transcription elongation speeds and rates of RNA polymerase II transition into active elongation with 4sUDRB-seq.

Fuchs G, Voichek Y, Rabani M, Benjamin S, Gilad S, Amit I, Oren M.

Nat Protoc. 2015 Apr;10(4):605-18. doi: 10.1038/nprot.2015.035. Epub 2015 Mar 26.

PMID:
25811895
9.

Cotranscriptional histone H2B monoubiquitylation is tightly coupled with RNA polymerase II elongation rate.

Fuchs G, Hollander D, Voichek Y, Ast G, Oren M.

Genome Res. 2014 Oct;24(10):1572-83. doi: 10.1101/gr.176487.114. Epub 2014 Jul 21.

10.

Divergence and selectivity of expression-coupled histone modifications in budding yeasts.

Mosesson Y, Voichek Y, Barkai N.

PLoS One. 2014 Jul 9;9(7):e101538. doi: 10.1371/journal.pone.0101538. eCollection 2014.

11.

4sUDRB-seq: measuring genomewide transcriptional elongation rates and initiation frequencies within cells.

Fuchs G, Voichek Y, Benjamin S, Gilad S, Amit I, Oren M.

Genome Biol. 2014 May 9;15(5):R69. doi: 10.1186/gb-2014-15-5-r69.

12.

Coordination of gene expression and growth-rate in natural populations of budding yeast.

Tamari Z, Rosin D, Voichek Y, Barkai N.

PLoS One. 2014 Feb 12;9(2):e88801. doi: 10.1371/journal.pone.0088801. eCollection 2014.

13.

Expression noise and acetylation profiles distinguish HDAC functions.

Weinberger L, Voichek Y, Tirosh I, Hornung G, Amit I, Barkai N.

Mol Cell. 2012 Jul 27;47(2):193-202. doi: 10.1016/j.molcel.2012.05.008. Epub 2012 Jun 7.

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