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Items: 1 to 50 of 51

1.

Reproducibility, stability, and accuracy of microbial profiles by fecal sample collection method in three distinct populations.

Byrd DA, Chen J, Vogtmann E, Hullings A, Song SJ, Amir A, Kibriya MG, Ahsan H, Chen Y, Nelson H, Knight R, Shi J, Chia N, Sinha R.

PLoS One. 2019 Nov 18;14(11):e0224757. doi: 10.1371/journal.pone.0224757. eCollection 2019.

2.

DNA extraction for human microbiome studies: the issue of standardization.

Greathouse KL, Sinha R, Vogtmann E.

Genome Biol. 2019 Oct 21;20(1):212. doi: 10.1186/s13059-019-1843-8. Review.

3.

A Comparison of Biopsy and Mucosal Swab Specimens for Examining the Microbiota of Upper Gastrointestinal Carcinoma.

Liu AQ, Vogtmann E, Shao DT, Abnet CC, Dou HY, Qin Y, Su Z, Wei WQ, Chen W.

Cancer Epidemiol Biomarkers Prev. 2019 Sep 13. doi: 10.1158/1055-9965.EPI-18-1210. [Epub ahead of print]

PMID:
31519703
4.

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS 2nd, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson CHD, Willis AD, Xu ZZ, Zaneveld JR, Zhang Y, Zhu Q, Knight R, Caporaso JG.

Nat Biotechnol. 2019 Sep;37(9):1091. doi: 10.1038/s41587-019-0252-6.

PMID:
31399723
5.

Microbial characterization of esophageal squamous cell carcinoma and gastric cardia adenocarcinoma from a high-risk region of China.

Shao D, Vogtmann E, Liu A, Qin J, Chen W, Abnet CC, Wei W.

Cancer. 2019 Nov 15;125(22):3993-4002. doi: 10.1002/cncr.32403. Epub 2019 Jul 29.

PMID:
31355925
6.

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS 2nd, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson CHD, Willis AD, Xu ZZ, Zaneveld JR, Zhang Y, Zhu Q, Knight R, Caporaso JG.

Nat Biotechnol. 2019 Aug;37(8):852-857. doi: 10.1038/s41587-019-0209-9. No abstract available. Erratum in: Nat Biotechnol. 2019 Sep;37(9):1091.

PMID:
31341288
7.

Tobacco smoking and trends in histological subtypes of female lung cancer at the Cancer Hospital of the Chinese Academy of Medical Sciences over 13 years.

Zeng Q, Vogtmann E, Jia MM, Parascandola M, Li JB, Wu YL, Feng QF, Zou XN.

Thorac Cancer. 2019 Aug;10(8):1717-1724. doi: 10.1111/1759-7714.13141. Epub 2019 Jul 10.

8.

Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer.

Wirbel J, Pyl PT, Kartal E, Zych K, Kashani A, Milanese A, Fleck JS, Voigt AY, Palleja A, Ponnudurai R, Sunagawa S, Coelho LP, Schrotz-King P, Vogtmann E, Habermann N, Niméus E, Thomas AM, Manghi P, Gandini S, Serrano D, Mizutani S, Shiroma H, Shiba S, Shibata T, Yachida S, Yamada T, Waldron L, Naccarati A, Segata N, Sinha R, Ulrich CM, Brenner H, Arumugam M, Bork P, Zeller G.

Nat Med. 2019 Apr;25(4):679-689. doi: 10.1038/s41591-019-0406-6. Epub 2019 Apr 1.

PMID:
30936547
9.

Next steps in studying the human microbiome and health in prospective studies, Bethesda, MD, May 16-17, 2017.

Sinha R, Ahsan H, Blaser M, Caporaso JG, Carmical JR, Chan AT, Fodor A, Gail MH, Harris CC, Helzlsouer K, Huttenhower C, Knight R, Kong HH, Lai GY, Hutchinson DLS, Le Marchand L, Li H, Orlich MJ, Shi J, Truelove A, Verma M, Vogtmann E, White O, Willett W, Zheng W, Mahabir S, Abnet C.

Microbiome. 2018 Nov 26;6(1):210. doi: 10.1186/s40168-018-0596-z.

10.

Comparison of Oral Collection Methods for Studies of Microbiota.

Vogtmann E, Chen J, Kibriya MG, Amir A, Shi J, Chen Y, Islam T, Eunes M, Ahmed A, Naher J, Rahman A, Barmon B, Knight R, Chia N, Ahsan H, Abnet CC, Sinha R.

Cancer Epidemiol Biomarkers Prev. 2019 Jan;28(1):137-143. doi: 10.1158/1055-9965.EPI-18-0312. Epub 2018 Sep 27.

PMID:
30262598
11.

Quantification of Human Microbiome Stability Over 6 Months: Implications for Epidemiologic Studies.

Sinha R, Goedert JJ, Vogtmann E, Hua X, Porras C, Hayes R, Safaeian M, Yu G, Sampson J, Ahn J, Shi J.

Am J Epidemiol. 2018 Jun 1;187(6):1282-1290. doi: 10.1093/aje/kwy064.

12.

Temporal Variability of Oral Microbiota over 10 Months and the Implications for Future Epidemiologic Studies.

Vogtmann E, Hua X, Zhou L, Wan Y, Suman S, Zhu B, Dagnall CL, Hutchinson A, Jones K, Hicks BD, Sinha R, Shi J, Abnet CC.

Cancer Epidemiol Biomarkers Prev. 2018 May;27(5):594-600. doi: 10.1158/1055-9965.EPI-17-1004. Epub 2018 Feb 23.

13.

Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium.

Sinha R, Abu-Ali G, Vogtmann E, Fodor AA, Ren B, Amir A, Schwager E, Crabtree J, Ma S; Microbiome Quality Control Project Consortium, Abnet CC, Knight R, White O, Huttenhower C.

Nat Biotechnol. 2017 Nov;35(11):1077-1086. doi: 10.1038/nbt.3981. Epub 2017 Oct 2.

14.

Sleep characteristics, light at night and breast cancer risk in a prospective cohort.

White AJ, Weinberg CR, Park YM, D'Aloisio AA, Vogtmann E, Nichols HB, Sandler DP.

Int J Cancer. 2017 Dec 1;141(11):2204-2214. doi: 10.1002/ijc.30920. Epub 2017 Aug 22.

15.

Tobacco Product Use Patterns, and Nicotine and Tobacco-Specific Nitrosamine Exposure: NHANES 1999-2012.

Choi K, Sabado M, El-Toukhy S, Vogtmann E, Freedman ND, Hatsukami D.

Cancer Epidemiol Biomarkers Prev. 2017 Oct;26(10):1525-1530. doi: 10.1158/1055-9965.EPI-17-0338. Epub 2017 Jul 14.

16.

Oral health and mortality in the Golestan Cohort Study.

Vogtmann E, Etemadi A, Kamangar F, Islami F, Roshandel G, Poustchi H, Pourshams A, Khoshnia M, Gharravi A, Brennan PJ, Boffetta P, Dawsey SM, Malekzadeh R, Abnet CC.

Int J Epidemiol. 2017 Dec 1;46(6):2028-2035. doi: 10.1093/ije/dyx056.

17.

Serum gastrin and cholecystokinin are associated with subsequent development of gastric cancer in a prospective cohort of Finnish smokers.

Murphy G, Abnet CC, Choo-Wosoba H, Vogtmann E, Weinstein SJ, Taylor PR, Männistö S, Albanes D, Dawsey SM, Rehfeld JF, Freedman ND.

Int J Epidemiol. 2017 Jun 1;46(3):914-923. doi: 10.1093/ije/dyx030.

18.

Oral bisphosphonates and colorectal cancer.

Vogtmann E, Corley DA, Almers LM, Cardwell CR, Murray LJ, Abnet CC.

Sci Rep. 2017 Mar 10;7:44177. doi: 10.1038/srep44177.

19.

Comparison of Fecal Collection Methods for Microbiota Studies in Bangladesh.

Vogtmann E, Chen J, Kibriya MG, Chen Y, Islam T, Eunes M, Ahmed A, Naher J, Rahman A, Amir A, Shi J, Abnet CC, Nelson H, Knight R, Chia N, Ahsan H, Sinha R.

Appl Environ Microbiol. 2017 May 1;83(10). pii: e00361-17. doi: 10.1128/AEM.00361-17. Print 2017 May 15.

20.

Comparison of Collection Methods for Fecal Samples in Microbiome Studies.

Vogtmann E, Chen J, Amir A, Shi J, Abnet CC, Nelson H, Knight R, Chia N, Sinha R.

Am J Epidemiol. 2017 Jan 15;185(2):115-123. doi: 10.1093/aje/kww177. Epub 2016 Dec 16.

21.

Comparison of Collection Methods for Fecal Samples for Discovery Metabolomics in Epidemiologic Studies.

Loftfield E, Vogtmann E, Sampson JN, Moore SC, Nelson H, Knight R, Chia N, Sinha R.

Cancer Epidemiol Biomarkers Prev. 2016 Nov;25(11):1483-1490. Epub 2016 Aug 19.

22.

Coffee Drinking Is Widespread in the United States, but Usual Intake Varies by Key Demographic and Lifestyle Factors.

Loftfield E, Freedman ND, Dodd KW, Vogtmann E, Xiao Q, Sinha R, Graubard BI.

J Nutr. 2016 Sep;146(9):1762-8. doi: 10.3945/jn.116.233940. Epub 2016 Aug 3.

23.

Colorectal Cancer and the Human Gut Microbiome: Reproducibility with Whole-Genome Shotgun Sequencing.

Vogtmann E, Hua X, Zeller G, Sunagawa S, Voigt AY, Hercog R, Goedert JJ, Shi J, Bork P, Sinha R.

PLoS One. 2016 May 12;11(5):e0155362. doi: 10.1371/journal.pone.0155362. eCollection 2016.

24.

Fecal Microbiome in Epidemiologic Studies-Response.

Sinha R, Vogtmann E, Chen J, Amir A, Shi J, Sampson J, Flores R, Knight R, Chia N.

Cancer Epidemiol Biomarkers Prev. 2016 May;25(5):870-1. doi: 10.1158/1055-9965.EPI-16-0161. Epub 2016 Mar 9. No abstract available.

25.

Contemporary impact of tobacco use on periodontal disease in the USA.

Vogtmann E, Graubard B, Loftfield E, Chaturvedi A, Dye BA, Abnet CC, Freedman ND.

Tob Control. 2017 Mar;26(2):237-238. doi: 10.1136/tobaccocontrol-2015-052750. Epub 2016 Feb 15. No abstract available.

26.

Epidemiologic studies of the human microbiome and cancer.

Vogtmann E, Goedert JJ.

Br J Cancer. 2016 Feb 2;114(3):237-42. doi: 10.1038/bjc.2015.465. Epub 2016 Jan 5. Review.

27.

Collecting Fecal Samples for Microbiome Analyses in Epidemiology Studies.

Sinha R, Chen J, Amir A, Vogtmann E, Shi J, Inman KS, Flores R, Sampson J, Knight R, Chia N.

Cancer Epidemiol Biomarkers Prev. 2016 Feb;25(2):407-16. doi: 10.1158/1055-9965.EPI-15-0951. Epub 2015 Nov 24.

28.

Oral Bisphosphonate Exposure and the Risk of Upper Gastrointestinal Cancers.

Vogtmann E, Corley DA, Almers LM, Cardwell CR, Murray LJ, Abnet CC.

PLoS One. 2015 Oct 7;10(10):e0140180. doi: 10.1371/journal.pone.0140180. eCollection 2015.

29.

Beta-diversity metrics of the upper digestive tract microbiome are associated with body mass index.

Lin SW, Freedman ND, Shi J, Gail MH, Vogtmann E, Yu G, Klepac-Ceraj V, Paster BJ, Dye BA, Wang GQ, Wei WQ, Fan JH, Qiao YL, Dawsey SM, Abnet CC.

Obesity (Silver Spring). 2015 Apr;23(4):862-9. doi: 10.1002/oby.21020. Epub 2015 Mar 9.

30.

Association between tobacco use and the upper gastrointestinal microbiome among Chinese men.

Vogtmann E, Flores R, Yu G, Freedman ND, Shi J, Gail MH, Dye BA, Wang GQ, Klepac-Ceraj V, Paster BJ, Wei WQ, Guo HQ, Dawsey SM, Qiao YL, Abnet CC.

Cancer Causes Control. 2015 Apr;26(4):581-8. doi: 10.1007/s10552-015-0535-2. Epub 2015 Feb 21.

31.

Price elasticity and medication use: cost sharing across multiple clinical conditions.

Gatwood J, Gibson TB, Chernew ME, Farr AM, Vogtmann E, Fendrick AM.

J Manag Care Spec Pharm. 2014 Nov;20(11):1102-7.

32.

Correlates of self-reported dietary cruciferous vegetable intake and urinary isothiocyanate from two cohorts in China.

Vogtmann E, Yang G, Li HL, Wang J, Han LH, Wu QJ, Xie L, Cai Q, Li GL, Waterbor JW, Levitan EB, Zhang B, Gao YT, Zheng W, Xiang YB, Shu XO.

Public Health Nutr. 2015 May;18(7):1237-44. doi: 10.1017/S1368980014001505. Epub 2014 Aug 7.

33.

Prevalence of complications from adult tonsillectomy and impact on health care expenditures.

Seshamani M, Vogtmann E, Gatwood J, Gibson TB, Scanlon D.

Otolaryngol Head Neck Surg. 2014 Apr;150(4):574-81. doi: 10.1177/0194599813519972.

PMID:
24691645
34.

Cholelithiasis and the risk of liver cancer: results from cohort studies of 134,546 Chinese men and women.

Vogtmann E, Shu XO, Li HL, Chow WH, Yang G, Ji BT, Cai H, Yu C, Gao YT, Zheng W, Xiang YB.

J Epidemiol Community Health. 2014 Jun;68(6):565-70. doi: 10.1136/jech-2013-203503. Epub 2014 Feb 26.

35.

Cruciferous vegetables, glutathione S-transferase polymorphisms, and the risk of colorectal cancer among Chinese men.

Vogtmann E, Xiang YB, Li HL, Cai Q, Wu QJ, Xie L, Li GL, Yang G, Waterbor JW, Levitan EB, Zhang B, Zheng W, Shu XO.

Ann Epidemiol. 2014 Jan;24(1):44-9. doi: 10.1016/j.annepidem.2013.10.003. Epub 2013 Oct 12.

36.

Association between sleep and breast cancer incidence among postmenopausal women in the Women's Health Initiative.

Vogtmann E, Levitan EB, Hale L, Shikany JM, Shah NA, Endeshaw Y, Lewis CE, Manson JE, Chlebowski RT.

Sleep. 2013 Oct 1;36(10):1437-44. doi: 10.5665/sleep.3032.

37.

Breastfeeding and ovarian cancer risk: a meta-analysis of epidemiologic studies.

Luan NN, Wu QJ, Gong TT, Vogtmann E, Wang YL, Lin B.

Am J Clin Nutr. 2013 Oct;98(4):1020-31. doi: 10.3945/ajcn.113.062794. Epub 2013 Aug 21.

38.

Fruit and vegetable intake and the risk of colorectal cancer: results from the Shanghai Men's Health Study.

Vogtmann E, Xiang YB, Li HL, Levitan EB, Yang G, Waterbor JW, Gao J, Cai H, Xie L, Wu QJ, Zhang B, Gao YT, Zheng W, Shu XO.

Cancer Causes Control. 2013 Nov;24(11):1935-45. doi: 10.1007/s10552-013-0268-z. Epub 2013 Aug 4.

39.

Variants in CCK and CCKAR genes to susceptibility to biliary tract cancers and stones: a population-based study in Shanghai, China.

Xu HL, Hsing AW, Vogtmann E, Chu LW, Cheng JR, Gao J, Tan YT, Wang BS, Shen MC, Gao YT.

J Gastroenterol Hepatol. 2013 Sep;28(9):1476-81. doi: 10.1111/jgh.12278.

40.

Cruciferous vegetables consumption and the risk of female lung cancer: a prospective study and a meta-analysis.

Wu QJ, Xie L, Zheng W, Vogtmann E, Li HL, Yang G, Ji BT, Gao YT, Shu XO, Xiang YB.

Ann Oncol. 2013 Jul;24(7):1918-24. doi: 10.1093/annonc/mdt119. Epub 2013 Apr 3.

41.

Socioeconomic status, p53 abnormalities, and colorectal cancer.

Vogtmann E, Shanmugam C, Katkoori VR, Waterbor J, Manne U.

J Gastrointest Oncol. 2013 Mar;4(1):40-4. doi: 10.3978/j.issn.2078-6891.2012.054.

42.

Cruciferous vegetables intake and the risk of colorectal cancer: a meta-analysis of observational studies.

Wu QJ, Yang Y, Vogtmann E, Wang J, Han LH, Li HL, Xiang YB.

Ann Oncol. 2013 Apr;24(4):1079-87. doi: 10.1093/annonc/mds601. Epub 2012 Dec 4.

43.

Age at menarche and risk of ovarian cancer: a meta-analysis of epidemiological studies.

Gong TT, Wu QJ, Vogtmann E, Lin B, Wang YL.

Int J Cancer. 2013 Jun 15;132(12):2894-900. doi: 10.1002/ijc.27952. Epub 2012 Dec 13.

44.

Dietary glycemic load, glycemic index, and carbohydrates on the risk of primary liver cancer among Chinese women and men.

Vogtmann E, Li HL, Shu XO, Chow WH, Ji BT, Cai H, Gao J, Zhang W, Gao YT, Zheng W, Xiang YB.

Ann Oncol. 2013 Jan;24(1):238-44. doi: 10.1093/annonc/mds287. Epub 2012 Aug 16.

45.

Cancer incidence among adolescents and young adults in urban Shanghai, 1973-2005.

Wu QJ, Vogtmann E, Zhang W, Xie L, Yang WS, Tan YT, Gao J, Xiang YB.

PLoS One. 2012;7(8):e42607. doi: 10.1371/journal.pone.0042607. Epub 2012 Aug 3.

46.

Meat consumption and risk of lung cancer: evidence from observational studies.

Yang WS, Wong MY, Vogtmann E, Tang RQ, Xie L, Yang YS, Wu QJ, Zhang W, Xiang YB.

Ann Oncol. 2012 Dec;23(12):3163-70. doi: 10.1093/annonc/mds207. Epub 2012 Jul 31.

47.

The cost burden of oral, oral pharyngeal, and salivary gland cancers in three groups: commercial insurance, Medicare, and Medicaid.

Jacobson JJ, Epstein JB, Eichmiller FC, Gibson TB, Carls GS, Vogtmann E, Wang S, Murphy B.

Head Neck Oncol. 2012;4:15. doi: 10.1186/1758-3284-4-15. Epub 2012 Apr 26.

48.

miRNAs are stable in colorectal cancer archival tissue blocks.

Bovell L, Shanmugam C, Katkoori VR, Zhang B, Vogtmann E, Grizzle WE, Manne U.

Front Biosci (Elite Ed). 2012 Jan 1;4:1937-40.

49.

The distinction between the use of a control group in a study and the use of a case-control design.

Royse K, Harris JB, Vogtmann E, Keenan JA, Liu J, McGwin G Jr.

J Am Coll Surg. 2011 Jul;213(1):197; author reply 197-8. doi: 10.1016/j.jamcollsurg.2011.04.014. No abstract available.

PMID:
21700198
50.

Longitudinal aspect of case-control analysis.

Vogtmann E, Prentice H, Griffin R, Mishra S, McGwin G Jr.

Arch Otolaryngol Head Neck Surg. 2010 Nov;136(11):1150; author reply 1150. doi: 10.1001/archoto.2010.176. No abstract available.

PMID:
21079176

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