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ccbmlib - a Python package for modeling Tanimoto similarity value distributions.

Vogt M, Bajorath J.

Version 2. F1000Res. 2020 Feb 10 [revised 2020 Jan 1];9. pii: Chem Inf Sci-100. doi: 10.12688/f1000research.22292.2. eCollection 2020.


Influence of Intraoperative Transesophageal Echocardiography and Pulmonary Artery Catheter Monitoring on Outcomes in Liver Transplantation.

Hofer RE, Vogt MNP, Taner T, Findlay JY.

Transplant Direct. 2020 Jan 13;6(2):e525. doi: 10.1097/TXD.0000000000000972. eCollection 2020 Feb.


Accuracy of Carotid Artery Stenosis Quantification with 4-D-Supported 3-D Power-Doppler versus Color-Doppler and 2-D Blood Velocity-Based Duplex Ultrasonography.

Macharzina RR, Kocher S, Hoffmann F, Becher H, Kammerer T, Vogt M, Vach W, Fan N, Rastan A, Neumann FJ, Zeller T.

Ultrasound Med Biol. 2020 May;46(5):1082-1091. doi: 10.1016/j.ultrasmedbio.2019.12.022. Epub 2020 Feb 17.


Post-operative functional neurological symptom disorder after anesthesia.

D'Souza RS, Vogt MN, Rho E.

Bosn J Basic Med Sci. 2020 Feb 12. doi: 10.17305/bjbms.2020.4646. [Epub ahead of print]


How do we optimize chemical space navigation?

Vogt M.

Expert Opin Drug Discov. 2020 Feb 18:1-3. doi: 10.1080/17460441.2020.1730324. [Epub ahead of print] No abstract available.


Hydrogenolysis of Polysilanes Catalyzed by Low Valent Nickel Complexes.

Pribanic B, Trincado M, Eiler F, Vogt M, Comas-Vives A, Grützmacher H.

Angew Chem Int Ed Engl. 2020 Feb 12. doi: 10.1002/anie.201907525. [Epub ahead of print]


Association of Perioperative Variables and the Acute Respiratory Distress Syndrome in Liver Transplant Recipients.

Ripoll JG, Wanta BT, Wetzel DR, Frank RD, Findlay JY, Vogt MNP.

Transplant Direct. 2019 Dec 24;6(1):e520. doi: 10.1097/TXD.0000000000000965. eCollection 2020 Jan.


Impaired endothelium-mediated cerebrovascular reactivity promotes anxiety and respiration disorders in mice.

Wenzel J, Hansen CE, Bettoni C, Vogt MA, Lembrich B, Natsagdorj R, Huber G, Brands J, Schmidt K, Assmann JC, Stölting I, Saar K, Sedlacik J, Fiehler J, Ludewig P, Wegmann M, Feller N, Richter M, Müller-Fielitz H, Walther T, König GM, Kostenis E, Raasch W, Hübner N, Gass P, Offermanns S, de Wit C, Wagner CA, Schwaninger M.

Proc Natl Acad Sci U S A. 2020 Jan 21;117(3):1753-1761. doi: 10.1073/pnas.1907467117. Epub 2020 Jan 2.


A Small Cationic Organo-Copper Cluster as Thermally Robust Highly Photo- and Electroluminescent Material.

Olaru M, Rychagova E, Ketkov S, Shynkarenko Y, Yakunin S, Kovalenko MV, Yablonskiy A, Andreev B, Kleemiss F, Beckmann J, Vogt M.

J Am Chem Soc. 2020 Jan 8;142(1):373-381. doi: 10.1021/jacs.9b10829. Epub 2019 Dec 20.


SLC17A6/7/8 Vesicular Glutamate Transporter Homologs in Nematodes.

Serrano-Saiz E, Vogt MC, Levy S, Wang Y, Kaczmarczyk KK, Mei X, Bai G, Singson A, Grant BD, Hobert O.

Genetics. 2020 Jan;214(1):163-178. doi: 10.1534/genetics.119.302855. Epub 2019 Nov 27.


Dengue viruses infect human megakaryocytes, with probable clinical consequences.

Vogt MB, Lahon A, Arya RP, Spencer Clinton JL, Rico-Hesse R.

PLoS Negl Trop Dis. 2019 Nov 25;13(11):e0007837. doi: 10.1371/journal.pntd.0007837. eCollection 2019 Nov.


Non-Oxido-Vanadium(IV) Metalloradical Complexes with Bidentate 1,2-Dithienylethene Ligands: Observation of Reversible Cyclization of the Ligand Scaffold in Solution.

Schlüter D, Kleemiss F, Fugel M, Lork E, Sugimoto K, Grabowsky S, Harmer JR, Vogt M.

Chemistry. 2020 Jan 27;26(6):1335-1343. doi: 10.1002/chem.201904103. Epub 2020 Jan 21.


A 2D hyperspectral library of mineral reflectance, from 900 to 2500 nm.

Fasnacht L, Vogt ML, Renard P, Brunner P.

Sci Data. 2019 Nov 11;6(1):268. doi: 10.1038/s41597-019-0261-9.


Tri- and Tetranuclear Metal-String Complexes with Metallophilic d10 -d10 Interactions.

Olaru M, Kögel JF, Aoki R, Sakamoto R, Nishihara H, Lork E, Mebs S, Vogt M, Beckmann J.

Chemistry. 2020 Jan 2;26(1):275-284. doi: 10.1002/chem.201904106. Epub 2019 Nov 26.


Systematic analysis of severity in a widely used cognitive depression model for mice.

Mallien AS, Häger C, Palme R, Talbot SR, Vogt MA, Pfeiffer N, Brandwein C, Struve B, Inta D, Chourbaji S, Hellweg R, Vollmayr B, Bleich A, Gass P.

Lab Anim. 2020 Feb;54(1):40-49. doi: 10.1177/0023677219874831. Epub 2019 Oct 1.


Right Ventricular Diastolic Function and Right Atrial Function and Their Relation With Exercise Capacity in Ebstein Anomaly.

Akazawa Y, Fujioka T, Kühn A, Hui W, Slorach C, Roehlig C, Mertens L, Vogt M, Friedberg MK.

Can J Cardiol. 2019 Dec;35(12):1824-1833. doi: 10.1016/j.cjca.2019.05.036. Epub 2019 Jun 12.


The SAPPHIRE criteria, history of myocardial infarction and diabetes predict adverse outcomes following carotid endarterectomy similar to stenting.

Macharzina RR, Müller C, Vogt M, Messé SR, Vach W, Winker T, Weinbeck M, Siepe M, Czerny M, Neumann FJ, Zeller T.

Clin Res Cardiol. 2019 Sep 25. doi: 10.1007/s00392-019-01546-3. [Epub ahead of print]


Systematic Extraction of Analogue Series from Large Compound Collections Using a New Computational Compound-Core Relationship Method.

Naveja JJ, Vogt M, Stumpfe D, Medina-Franco JL, Bajorath J.

ACS Omega. 2019 Jan 14;4(1):1027-1032. doi: 10.1021/acsomega.8b03390. eCollection 2019 Jan 31.


Structural and Functional Characterization of an Electron Transfer Flavoprotein Involved in Toluene Degradation in Strictly Anaerobic Bacteria.

Vogt MS, Schühle K, Kölzer S, Peschke P, Chowdhury NP, Kleinsorge D, Buckel W, Essen LO, Heider J.

J Bacteriol. 2019 Oct 4;201(21). pii: e00326-19. doi: 10.1128/JB.00326-19. Print 2019 Nov 1.


Comments on "Basal cell carcinoma: Contemporary approaches to diagnosis, treatment, and prevention".

Sethi A, Vogt M, Brocato J, Habeeb L, Squittieri N.

J Am Acad Dermatol. 2019 Aug 5. pii: S0190-9622(19)32488-0. doi: 10.1016/j.jaad.2019.07.095. [Epub ahead of print] No abstract available.


The Glycosylphosphatidylinositol-Anchored DFG Family Is Essential for the Insertion of Galactomannan into the β-(1,3)-Glucan-Chitin Core of the Cell Wall of Aspergillus fumigatus.

Muszkieta L, Fontaine T, Beau R, Mouyna I, Vogt MS, Trow J, Cormack BP, Essen LO, Jouvion G, Latgé JP.

mSphere. 2019 Jul 31;4(4). pii: e00397-19. doi: 10.1128/mSphere.00397-19.


Toward a Unified Terminology of Processing Levels for Low-Cost Air-Quality Sensors.

Schneider P, Bartonova A, Castell N, Dauge FR, Gerboles M, Hagler GSW, Hüglin C, Jones RL, Khan S, Lewis AC, Mijling B, Müller M, Penza M, Spinelle L, Stacey B, Vogt M, Wesseling J, Williams RW.

Environ Sci Technol. 2019 Aug 6;53(15):8485-8487. doi: 10.1021/acs.est.9b03950. Epub 2019 Jul 29. No abstract available.


Hand-held bioprinting for de novo vascular formation applicable to dental pulp regeneration.

Duarte Campos DF, Zhang S, Kreimendahl F, Köpf M, Fischer H, Vogt M, Blaeser A, Apel C, Esteves-Oliveira M.

Connect Tissue Res. 2020 Mar;61(2):205-215. doi: 10.1080/03008207.2019.1640217. Epub 2019 Jul 9.


Indirect chiral magnetic exchange through Dzyaloshinskii-Moriya-enhanced RKKY interactions in manganese oxide chains on Ir(100).

Schmitt M, Moras P, Bihlmayer G, Cotsakis R, Vogt M, Kemmer J, Belabbes A, Sheverdyaeva PM, Kundu AK, Carbone C, Blügel S, Bode M.

Nat Commun. 2019 Jun 13;10(1):2610. doi: 10.1038/s41467-019-10515-3.


Novel 3D analysis using optical tissue clearing documents the evolution of murine rapidly progressive glomerulonephritis.

Puelles VG, Fleck D, Ortz L, Papadouri S, Strieder T, Böhner AMC, van der Wolde JW, Vogt M, Saritas T, Kuppe C, Fuss A, Menzel S, Klinkhammer BM, Müller-Newen G, Heymann F, Decker L, Braun F, Kretz O, Huber TB, Susaki EA, Ueda HR, Boor P, Floege J, Kramann R, Kurts C, Bertram JF, Spehr M, Nikolic-Paterson DJ, Moeller MJ.

Kidney Int. 2019 Aug;96(2):505-516. doi: 10.1016/j.kint.2019.02.034. Epub 2019 Mar 15.


Humoral and Cellular Patterns of Early Endothelial Progenitor Cells in Relation to the Cardiovascular Risk in Axial Spondylarthritis.

Patschan S, Vogt M, Bakhtiari D, Bramlage CP, Henze E, Muller GA, Krause A, Patschan D.

J Clin Med Res. 2019 Jun;11(6):391-400. doi: 10.14740/jocmr3441w. Epub 2019 May 10.


Improved Carotid Stenosis Quantification on Novel 4D/3D-Doppler Ultrasonography Indexing to the Common Carotid Artery.

Macharzina RR, Kocher S, Messe SR, Kammerer T, Hoffmann F, Vogt M, Vach W, Fan N, Rastan A, Neumann FJ, Zeller T.

Ultraschall Med. 2019 May 29. doi: 10.1055/a-0628-6459. [Epub ahead of print]


Global pattern of phytoplankton diversity driven by temperature and environmental variability.

Righetti D, Vogt M, Gruber N, Psomas A, Zimmermann NE.

Sci Adv. 2019 May 15;5(5):eaau6253. doi: 10.1126/sciadv.aau6253. eCollection 2019 May.


Notes and comments on efficacy, safety, and comparison of sonic hedgehog inhibitors in basal cell carcinomas: A systematic review and analysis.

Vogt M, Sethi A, Brocato J, Squittieri N.

J Am Acad Dermatol. 2019 May 9. pii: S0190-9622(19)30698-X. doi: 10.1016/j.jaad.2019.03.094. [Epub ahead of print] No abstract available.


The Impact of a Nitric Oxide Synthase Inhibitor (L-NAME) on Ischemia⁻Reperfusion Injury of Cholestatic Livers by Pringle Maneuver and Liver Resection after Bile Duct Ligation in Rats.

Iwasaki J, Afify M, Bleilevens C, Klinge U, Weiskirchen R, Steitz J, Vogt M, Yagi S, Nagai K, Uemoto S, Tolba RH.

Int J Mol Sci. 2019 Apr 29;20(9). pii: E2114. doi: 10.3390/ijms20092114.


Learned helplessness reveals a population at risk for depressive-like behaviour after myocardial infarction in mice.

Bruns B, Schmitz T, Diemert N, Schwale C, Werhahn SM, Weyrauther F, Gass P, Vogt MA, Katus H, Herzog W, Backs J, Schultz JH.

ESC Heart Fail. 2019 Aug;6(4):711-722. doi: 10.1002/ehf2.12440. Epub 2019 Apr 26.


Discovery, X-ray Crystallography and Antiviral Activity of Allosteric Inhibitors of Flavivirus NS2B-NS3 Protease.

Yao Y, Huo T, Lin YL, Nie S, Wu F, Hua Y, Wu J, Kneubehl AR, Vogt MB, Rico-Hesse R, Song Y.

J Am Chem Soc. 2019 May 1;141(17):6832-6836. doi: 10.1021/jacs.9b02505. Epub 2019 Apr 23.


Corneal bioprinting utilizing collagen-based bioinks and primary human keratocytes.

Duarte Campos DF, Rohde M, Ross M, Anvari P, Blaeser A, Vogt M, Panfil C, Yam GH, Mehta JS, Fischer H, Walter P, Fuest M.

J Biomed Mater Res A. 2019 Sep;107(9):1945-1953. doi: 10.1002/jbm.a.36702. Epub 2019 Apr 29.


Effect of three different forms of handling on the variation of aggression-associated parameters in individually and group-housed male C57BL/6NCrl mice.

Mertens S, Vogt MA, Gass P, Palme R, Hiebl B, Chourbaji S.

PLoS One. 2019 Apr 12;14(4):e0215367. doi: 10.1371/journal.pone.0215367. eCollection 2019.


MYC Recruits SPT5 to RNA Polymerase II to Promote Processive Transcription Elongation.

Baluapuri A, Hofstetter J, Dudvarski Stankovic N, Endres T, Bhandare P, Vos SM, Adhikari B, Schwarz JD, Narain A, Vogt M, Wang SY, Düster R, Jung LA, Vanselow JT, Wiegering A, Geyer M, Maric HM, Gallant P, Walz S, Schlosser A, Cramer P, Eilers M, Wolf E.

Mol Cell. 2019 May 16;74(4):674-687.e11. doi: 10.1016/j.molcel.2019.02.031. Epub 2019 Mar 27.


Systematic computational identification of promiscuity cliff pathways formed by inhibitors of the human kinome.

Miljković F, Vogt M, Bajorath J.

J Comput Aided Mol Des. 2019 Jun;33(6):559-572. doi: 10.1007/s10822-019-00198-9. Epub 2019 Mar 26.


An Oxidative Pathway for Microbial Utilization of Methylphosphonic Acid as a Phosphate Source.

Gama SR, Vogt M, Kalina T, Hupp K, Hammerschmidt F, Pallitsch K, Zechel DL.

ACS Chem Biol. 2019 Apr 19;14(4):735-741. doi: 10.1021/acschembio.9b00024. Epub 2019 Mar 13.


No evidence of carbapenemase-producing Enterobacteriaceae in stool samples of 1,544 asylum seekers arriving in Rhineland-Palatinate, Germany, April 2016 to March, 2017.

Ehlkes L, Pfeifer Y, Werner G, Ignatius R, Vogt M, Eckmanns T, Zanger P, Walter J.

Euro Surveill. 2019 Feb;24(8). doi: 10.2807/1560-7917.ES.2019.24.8.1800030.


Calcium phosphate scaffolds with defined interconnecting channel structure provide a mimetic 3D niche for bone marrow metastasized tumor cell growth.

Aveic S, Davtalab R, Vogt M, Weber M, Buttler P, Tonini GP, Fischer H.

Acta Biomater. 2019 Apr 1;88:527-539. doi: 10.1016/j.actbio.2019.02.030. Epub 2019 Feb 20.


Exploring Cancer Cell Behavior In Vitro in Three-Dimensional Multicellular Bioprintable Collagen-Based Hydrogels.

Duarte Campos DF, Bonnin Marquez A, O'Seanain C, Fischer H, Blaeser A, Vogt M, Corallo D, Aveic S.

Cancers (Basel). 2019 Feb 5;11(2). pii: E180. doi: 10.3390/cancers11020180.


Non-invasive Hemodynamic CMR Parameters Predicting Maximal Exercise Capacity in 54 Patients with Ebstein's Anomaly.

Meierhofer C, Kühn A, Müller J, Shehu N, Hager A, Martinoff S, Stern H, Ewert P, Vogt M.

Pediatr Cardiol. 2019 Apr;40(4):792-798. doi: 10.1007/s00246-019-02066-7. Epub 2019 Feb 6.


Modulation of the central carbon metabolism of Corynebacterium glutamicum improves malonyl-CoA availability and increases plant polyphenol synthesis.

Milke L, Ferreira P, Kallscheuer N, Braga A, Vogt M, Kappelmann J, Oliveira J, Silva AR, Rocha I, Bott M, Noack S, Faria N, Marienhagen J.

Biotechnol Bioeng. 2019 Jun;116(6):1380-1391. doi: 10.1002/bit.26939. Epub 2019 Feb 28.


Current Understanding of Humoral Immunity to Enterovirus D68.

Vogt MR, Crowe JE Jr.

J Pediatric Infect Dis Soc. 2018 Dec 26;7(suppl_2):S49-S53. doi: 10.1093/jpids/piy124. Review.


Computational Assessment of Chemical Saturation of Analogue Series under Varying Conditions.

Yonchev D, Vogt M, Stumpfe D, Kunimoto R, Miyao T, Bajorath J.

ACS Omega. 2018 Nov 30;3(11):15799-15808. doi: 10.1021/acsomega.8b02087. Epub 2018 Nov 20.


Impact of Interventricular Interactions on Left Ventricular Function, Stroke Volume, and Exercise Capacity in Children and Adults With Ebstein's Anomaly.

Fujioka T, Kühn A, Sanchez-Martinez S, Bijnens BH, Hui W, Slorach C, Roehlig C, Mertens L, Vogt M, Friedberg MK.

JACC Cardiovasc Imaging. 2019 May;12(5):925-927. doi: 10.1016/j.jcmg.2018.09.024. Epub 2018 Dec 12. No abstract available.


Computational Method to Evaluate Progress in Lead Optimization.

Vogt M, Yonchev D, Bajorath J.

J Med Chem. 2018 Dec 13;61(23):10895-10900. doi: 10.1021/acs.jmedchem.8b01626. Epub 2018 Nov 30.


Automated Versatile DIY Microscope Platform.

Pylatiuk C, Vogt M, Scheikl P, Gottwald AE.

Conf Proc IEEE Eng Med Biol Soc. 2018 Jul;2018:5310-5312. doi: 10.1109/EMBC.2018.8513465.


Crystal structure of an Lrs14-like archaeal biofilm regulator from Sulfolobus acidocaldarius.

Vogt MS, Völpel SL, Albers SV, Essen LO, Banerjee A.

Acta Crystallogr D Struct Biol. 2018 Nov 1;74(Pt 11):1105-1114. doi: 10.1107/S2059798318014146. Epub 2018 Oct 29.


Mild Impairment of Mitochondrial OXPHOS Promotes Fatty Acid Utilization in POMC Neurons and Improves Glucose Homeostasis in Obesity.

Timper K, Paeger L, Sánchez-Lasheras C, Varela L, Jais A, Nolte H, Vogt MC, Hausen AC, Heilinger C, Evers N, Pospisilik JA, Penninger JM, Taylor EB, Horvath TL, Kloppenburg P, Brüning JC.

Cell Rep. 2018 Oct 9;25(2):383-397.e10. doi: 10.1016/j.celrep.2018.09.034.


Computationally derived compound profiling matrices.

Vogt M, Jasial S, Bajorath J.

Future Sci OA. 2018 Jul 24;4(8):FSO327. doi: 10.4155/fsoa-2018-0050. eCollection 2018 Sep.

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