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Items: 1 to 50 of 90

1.

A comparative genomics approach for identifying host-range determinants in Streptococcus thermophilus bacteriophages.

Szymczak P, Rau MH, Monteiro JM, Pinho MG, Filipe SR, Vogensen FK, Zeidan AA, Janzen T.

Sci Rep. 2019 May 29;9(1):7991. doi: 10.1038/s41598-019-44481-z.

2.

Mouse Vendor Influence on the Bacterial and Viral Gut Composition Exceeds the Effect of Diet.

Rasmussen TS, de Vries L, Kot W, Hansen LH, Castro-Mejía JL, Vogensen FK, Hansen AK, Nielsen DS.

Viruses. 2019 May 13;11(5). pii: E435. doi: 10.3390/v11050435.

3.

Isolation and characterization of bacteriophages active against methicillin-resistant Staphylococcus pseudintermedius.

Moodley A, Kot W, Nälgård S, Jakociune D, Neve H, Hansen LH, Guardabassi L, Vogensen FK.

Res Vet Sci. 2019 Feb;122:81-85. doi: 10.1016/j.rvsc.2018.11.008. Epub 2018 Nov 12.

PMID:
30468880
4.

Cell Wall Glycans Mediate Recognition of the Dairy Bacterium Streptococcus thermophilus by Bacteriophages.

Szymczak P, Filipe SR, Covas G, Vogensen FK, Neves AR, Janzen T.

Appl Environ Microbiol. 2018 Nov 15;84(23). pii: e01847-18. doi: 10.1128/AEM.01847-18. Print 2018 Dec 1.

5.

Extraction and Purification of Viruses from Fecal Samples for Metagenome and Morphology Analyses.

Castro-Mejía JL, Deng L, Vogensen FK, Reyes A, Nielsen DS.

Methods Mol Biol. 2018;1838:49-57. doi: 10.1007/978-1-4939-8682-8_5.

PMID:
30128989
6.

Gut microbiota recovery and immune response in ampicillin-treated mice.

Castro-Mejía JL, Jakesevic M, Fabricius NF, Krych Ł, Nielsen DS, Kot W, Bendtsen KM, Vogensen FK, Hansen CHF, Hansen AK.

Res Vet Sci. 2018 Jun;118:357-364. doi: 10.1016/j.rvsc.2018.03.013. Epub 2018 Mar 27.

PMID:
29653396
7.

Investigation of the bacteriophage community in induced lysates of undefined mesophilic mixed-strain DL-cultures using classical and metagenomic approaches.

Muhammed MK, Olsen ML, Kot W, Neve H, Castro-Mejía JL, Janzen T, Hansen LH, Nielsen DS, Sørensen SJ, Heller KJ, Vogensen FK.

Int J Food Microbiol. 2018 May 2;272:61-72. doi: 10.1016/j.ijfoodmicro.2018.02.012. Epub 2018 Feb 21.

PMID:
29529425
8.

Have you tried spermine? A rapid and cost-effective method to eliminate dextran sodium sulfate inhibition of PCR and RT-PCR.

Krych Ł, Kot W, Bendtsen KMB, Hansen AK, Vogensen FK, Nielsen DS.

J Microbiol Methods. 2018 Jan;144:1-7. doi: 10.1016/j.mimet.2017.10.015. Epub 2017 Oct 28.

PMID:
29107603
9.

Metagenomic Analysis of Dairy Bacteriophages: Extraction Method and Pilot Study on Whey Samples Derived from Using Undefined and Defined Mesophilic Starter Cultures.

Muhammed MK, Kot W, Neve H, Mahony J, Castro-Mejía JL, Krych L, Hansen LH, Nielsen DS, Sørensen SJ, Heller KJ, van Sinderen D, Vogensen FK.

Appl Environ Microbiol. 2017 Sep 15;83(19). pii: e00888-17. doi: 10.1128/AEM.00888-17. Print 2017 Oct 1.

10.

Immunological effects of reduced mucosal integrity in the early life of BALB/c mice.

Bendtsen KM, Hansen CHF, Krych Ł, Skovgaard K, Kot W, Vogensen FK, Hansen AK.

PLoS One. 2017 May 1;12(5):e0176662. doi: 10.1371/journal.pone.0176662. eCollection 2017.

11.

A high-throughput qPCR system for simultaneous quantitative detection of dairy Lactococcus lactis and Leuconostoc bacteriophages.

Muhammed MK, Krych L, Nielsen DS, Vogensen FK.

PLoS One. 2017 Mar 24;12(3):e0174223. doi: 10.1371/journal.pone.0174223. eCollection 2017.

12.

Genomic Characterization of Dairy Associated Leuconostoc Species and Diversity of Leuconostocs in Undefined Mixed Mesophilic Starter Cultures.

Frantzen CA, Kot W, Pedersen TB, Ardö YM, Broadbent JR, Neve H, Hansen LH, Dal Bello F, Østlie HM, Kleppen HP, Vogensen FK, Holo H.

Front Microbiol. 2017 Feb 3;8:132. doi: 10.3389/fmicb.2017.00132. eCollection 2017.

13.

Novel Variants of Streptococcus thermophilus Bacteriophages Are Indicative of Genetic Recombination among Phages from Different Bacterial Species.

Szymczak P, Janzen T, Neves AR, Kot W, Hansen LH, Lametsch R, Neve H, Franz CMAP, Vogensen FK.

Appl Environ Microbiol. 2017 Feb 15;83(5). pii: e02748-16. doi: 10.1128/AEM.02748-16. Print 2017 Mar 1.

14.

Clear Plaque Mutants of Lactococcal Phage TP901-1.

Kot W, Kilstrup M, Vogensen FK, Hammer K.

PLoS One. 2016 Jun 3;11(6):e0155233. doi: 10.1371/journal.pone.0155233. eCollection 2016.

15.

Transcriptome analysis of Lactococcus lactis subsp. lactis during milk acidification as affected by dissolved oxygen and the redox potential.

Larsen N, Moslehi-Jenabian S, Werner BB, Jensen ML, Garrigues C, Vogensen FK, Jespersen L.

Int J Food Microbiol. 2016 Jun 2;226:5-12. doi: 10.1016/j.ijfoodmicro.2016.03.002. Epub 2016 Mar 5.

PMID:
27015296
16.

Taxonomy of prokaryotic viruses: update from the ICTV bacterial and archaeal viruses subcommittee.

Krupovic M, Dutilh BE, Adriaenssens EM, Wittmann J, Vogensen FK, Sullivan MB, Rumnieks J, Prangishvili D, Lavigne R, Kropinski AM, Klumpp J, Gillis A, Enault F, Edwards RA, Duffy S, Clokie MR, Barylski J, Ackermann HW, Kuhn JH.

Arch Virol. 2016 Apr;161(4):1095-9. doi: 10.1007/s00705-015-2728-0. Epub 2016 Jan 5. No abstract available.

PMID:
26733293
17.

Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gut.

Castro-Mejía JL, Muhammed MK, Kot W, Neve H, Franz CM, Hansen LH, Vogensen FK, Nielsen DS.

Microbiome. 2015 Nov 17;3:64. doi: 10.1186/s40168-015-0131-4.

18.

Effect of dissolved oxygen on redox potential and milk acidification by lactic acid bacteria isolated from a DL-starter culture.

Larsen N, Werner BB, Vogensen FK, Jespersen L.

J Dairy Sci. 2015 Mar;98(3):1640-51. doi: 10.3168/jds.2014-8971. Epub 2015 Jan 15.

19.

Classification of Lactococcus lactis cell envelope proteinase based on gene sequencing, peptides formed after hydrolysis of milk, and computer modeling.

Børsting MW, Qvist KB, Brockmann E, Vindeløv J, Pedersen TL, Vogensen FK, Ardö Y.

J Dairy Sci. 2015 Jan;98(1):68-77. doi: 10.3168/jds.2014-8517. Epub 2014 Nov 7.

20.

Contribution of volatiles to the antifungal effect of Lactobacillus paracasei in defined medium and yogurt.

Aunsbjerg SD, Honoré AH, Marcussen J, Ebrahimi P, Vogensen FK, Benfeldt C, Skov T, Knøchel S.

Int J Food Microbiol. 2015 Feb 2;194:46-53. doi: 10.1016/j.ijfoodmicro.2014.11.007. Epub 2014 Nov 11.

PMID:
25461608
21.

Transfer of gut microbiota from lean and obese mice to antibiotic-treated mice.

Ellekilde M, Selfjord E, Larsen CS, Jakesevic M, Rune I, Tranberg B, Vogensen FK, Nielsen DS, Bahl MI, Licht TR, Hansen AK, Hansen CH.

Sci Rep. 2014 Aug 1;4:5922. doi: 10.1038/srep05922.

22.

Complete Genome Sequences of Four Novel Lactococcus lactis Phages Distantly Related to the Rare 1706 Phage Species.

Kot W, Neve H, Vogensen FK, Heller KJ, Sørensen SJ, Hansen LH.

Genome Announc. 2014 Jul 10;2(4). pii: e00265-14. doi: 10.1128/genomeA.00265-14.

23.

Genome Sequence of Leuconostoc mesenteroides subsp. cremoris Strain T26, Isolated from Mesophilic Undefined Cheese Starter.

Pedersen TB, Kot WP, Hansen LH, Sørensen SJ, Broadbent JR, Vogensen FK, Ardö Y.

Genome Announc. 2014 Jun 5;2(3). pii: e00485-14. doi: 10.1128/genomeA.00485-14.

24.

Genome Sequences of Two Leuconostoc pseudomesenteroides Strains Isolated from Danish Dairy Starter Cultures.

Pedersen TB, Kot WP, Hansen LH, Sørensen SJ, Broadbent JR, Vogensen FK, Ardö Y.

Genome Announc. 2014 Jun 5;2(3). pii: e00484-14. doi: 10.1128/genomeA.00484-14.

25.

Bacteriophages of leuconostoc, oenococcus, and weissella.

Kot W, Neve H, Heller KJ, Vogensen FK.

Front Microbiol. 2014 Apr 28;5:186. doi: 10.3389/fmicb.2014.00186. eCollection 2014. Review.

26.

Sequence and comparative analysis of Leuconostoc dairy bacteriophages.

Kot W, Hansen LH, Neve H, Hammer K, Jacobsen S, Pedersen PD, Sørensen SJ, Heller KJ, Vogensen FK.

Int J Food Microbiol. 2014 Apr 17;176:29-37. doi: 10.1016/j.ijfoodmicro.2014.01.019. Epub 2014 Feb 5.

PMID:
24561391
27.

Characterization of the gut microbiota in leptin deficient obese mice - Correlation to inflammatory and diabetic parameters.

Ellekilde M, Krych L, Hansen CH, Hufeldt MR, Dahl K, Hansen LH, Sørensen SJ, Vogensen FK, Nielsen DS, Hansen AK.

Res Vet Sci. 2014 Apr;96(2):241-50. doi: 10.1016/j.rvsc.2014.01.007. Epub 2014 Feb 3.

PMID:
24556473
28.

DPS - a rapid method for genome sequencing of DNA-containing bacteriophages directly from a single plaque.

Kot W, Vogensen FK, Sørensen SJ, Hansen LH.

J Virol Methods. 2014 Feb;196:152-6. doi: 10.1016/j.jviromet.2013.10.040. Epub 2013 Nov 14.

PMID:
24239631
29.

2-heptyl-formononetin increases cholesterol and induces hepatic steatosis in mice.

Andersen C, Schjoldager JG, Tortzen CG, Vegge A, Hufeldt MR, Skaanild MT, Vogensen FK, Kristiansen K, Hansen AK, Nielsen J.

Biomed Res Int. 2013;2013:926942. doi: 10.1155/2013/926942. Epub 2013 Apr 29.

30.

Investigation of the relationship between lactococcal host cell wall polysaccharide genotype and 936 phage receptor binding protein phylogeny.

Mahony J, Kot W, Murphy J, Ainsworth S, Neve H, Hansen LH, Heller KJ, Sørensen SJ, Hammer K, Cambillau C, Vogensen FK, van Sinderen D.

Appl Environ Microbiol. 2013 Jul;79(14):4385-92. doi: 10.1128/AEM.00653-13. Epub 2013 May 10.

31.

Lactobacillus delbrueckii subsp. jakobsenii subsp. nov., isolated from dolo wort, an alcoholic fermented beverage in Burkina Faso.

Adimpong DB, Nielsen DS, Sørensen KI, Vogensen FK, Sawadogo-Lingani H, Derkx PM, Jespersen L.

Int J Syst Evol Microbiol. 2013 Oct;63(Pt 10):3720-6. doi: 10.1099/ijs.0.048769-0. Epub 2013 May 3.

PMID:
23645015
32.

Classification of lytic bacteriophages attacking dairy Leuconostoc starter strains.

Ali Y, Kot W, Atamer Z, Hinrichs J, Vogensen FK, Heller KJ, Neve H.

Appl Environ Microbiol. 2013 Jun;79(12):3628-36. doi: 10.1128/AEM.00076-13. Epub 2013 Apr 5.

33.

Effect of Lactobacillus salivarius Ls-33 on fecal microbiota in obese adolescents.

Larsen N, Vogensen FK, Gøbel RJ, Michaelsen KF, Forssten SD, Lahtinen SJ, Jakobsen M.

Clin Nutr. 2013 Dec;32(6):935-40. doi: 10.1016/j.clnu.2013.02.007. Epub 2013 Mar 4.

PMID:
23510724
34.

Identification of the receptor-binding protein in lytic Leuconostoc pseudomesenteroides bacteriophages.

Kot W, Hammer K, Neve H, Vogensen FK.

Appl Environ Microbiol. 2013 May;79(10):3311-4. doi: 10.1128/AEM.00012-13. Epub 2013 Mar 15.

35.

The lactococcal phages Tuc2009 and TP901-1 incorporate two alternate forms of their tail fiber into their virions for infection specialization.

Stockdale SR, Mahony J, Courtin P, Chapot-Chartier MP, van Pijkeren JP, Britton RA, Neve H, Heller KJ, Aideh B, Vogensen FK, van Sinderen D.

J Biol Chem. 2013 Feb 22;288(8):5581-90. doi: 10.1074/jbc.M112.444901. Epub 2013 Jan 8.

36.

Selective inbreeding does not increase gut microbiota similarity in BALB/c mice.

Pang W, Stradiotto D, Krych L, Karlskov-Mortensen P, Vogensen FK, Nielsen DS, Fredholm M, Hansen AK.

Lab Anim. 2012 Oct;46(4):335-7. doi: 10.1258/la.2012.012040.

PMID:
23097567
37.

Faecal and caecal microbiota profiles of mice do not cluster in the same way.

Pang W, Vogensen FK, Nielsen DS, Hansen AK.

Lab Anim. 2012 Jul;46(3):231-6. doi: 10.1258/la.2012.011128. Epub 2012 Jun 21.

PMID:
22723645
38.

Early life treatment with vancomycin propagates Akkermansia muciniphila and reduces diabetes incidence in the NOD mouse.

Hansen CH, Krych L, Nielsen DS, Vogensen FK, Hansen LH, Sørensen SJ, Buschard K, Hansen AK.

Diabetologia. 2012 Aug;55(8):2285-94. doi: 10.1007/s00125-012-2564-7. Epub 2012 May 10.

PMID:
22572803
39.

The fate of indigenous microbiota, starter cultures, Escherichia coli, Listeria innocua and Staphylococcus aureus in Danish raw milk and cheeses determined by pyrosequencing and quantitative real time (qRT)-PCR.

Masoud W, Vogensen FK, Lillevang S, Abu Al-Soud W, Sørensen SJ, Jakobsen M.

Int J Food Microbiol. 2012 Feb 1;153(1-2):192-202. doi: 10.1016/j.ijfoodmicro.2011.11.014. Epub 2011 Nov 20.

PMID:
22154239
40.

PCR amplification of repetitive sequences as a possible approach in relative species quantification.

Ballin NZ, Vogensen FK, Karlsson AH.

Meat Sci. 2012 Feb;90(2):438-43. doi: 10.1016/j.meatsci.2011.09.002. Epub 2011 Sep 10.

PMID:
21944936
41.

Lactobacilli and bifidobacteria induce differential interferon-β profiles in dendritic cells.

Weiss G, Christensen HR, Zeuthen LH, Vogensen FK, Jakobsen M, Frøkiær H.

Cytokine. 2011 Nov;56(2):520-30. doi: 10.1016/j.cyto.2011.07.024. Epub 2011 Sep 1.

PMID:
21889358
42.

The quorum sensing luxS gene is induced in Lactobacillus acidophilus NCFM in response to Listeria monocytogenes.

Moslehi-Jenabian S, Vogensen FK, Jespersen L.

Int J Food Microbiol. 2011 Oct 3;149(3):269-73. doi: 10.1016/j.ijfoodmicro.2011.06.011. Epub 2011 Jun 25. Erratum in: Int J Food Microbiol. 2011 Dec 2;151(2):257.

PMID:
21784546
43.

Manipulation of the gut microbiota in C57BL/6 mice changes glucose tolerance without affecting weight development and gut mucosal immunity.

Bech-Nielsen GV, Hansen CH, Hufeldt MR, Nielsen DS, Aasted B, Vogensen FK, Midtvedt T, Hansen AK.

Res Vet Sci. 2012 Jun;92(3):501-8. doi: 10.1016/j.rvsc.2011.04.005. Epub 2011 May 2.

PMID:
21543097
44.

Alcohol facilitates CD1d loading, subsequent activation of NKT cells, and reduces the incidence of diabetes in NOD mice.

Buschard K, Hansen AK, Jensen K, Lindenbergh-Kortleve DJ, de Ruiter LF, Krohn TC, Hufeldt MR, Vogensen FK, Aasted B, Osterbye T, Roep BO, de Haar C, Nieuwenhuis EE.

PLoS One. 2011 Apr 1;6(4):e17931. doi: 10.1371/journal.pone.0017931.

45.

Influence of microflora on texture and contents of amino acids, organic acids, and volatiles in semi-hard cheese made with DL-starter and propionibacteria.

Rehn U, Vogensen FK, Persson SE, Hallin Saedén K, Nilsson BF, Ardö Y.

J Dairy Sci. 2011 Mar;94(3):1098-111. doi: 10.3168/jds.2010-3146.

46.

Variation in the gut microbiota of laboratory mice is related to both genetic and environmental factors.

Hufeldt MR, Nielsen DS, Vogensen FK, Midtvedt T, Hansen AK.

Comp Med. 2010 Oct;60(5):336-47.

47.

Predominant genera of fecal microbiota in children with atopic dermatitis are not altered by intake of probiotic bacteria Lactobacillus acidophilus NCFM and Bifidobacterium animalis subsp. lactis Bi-07.

Larsen N, Vogensen FK, Gøbel R, Michaelsen KF, Abu Al-Soud W, Sørensen SJ, Hansen LH, Jakobsen M.

FEMS Microbiol Ecol. 2011 Mar;75(3):482-96. doi: 10.1111/j.1574-6941.2010.01024.x. Epub 2011 Jan 11.

48.

Family relationship of female breeders reduce the systematic inter-individual variation in the gut microbiota of inbred laboratory mice.

Hufeldt MR, Nielsen DS, Vogensen FK, Midtvedt T, Hansen AK.

Lab Anim. 2010 Oct;44(4):283-9. doi: 10.1258/la.2010.010058. Epub 2010 Aug 16.

PMID:
20713427
49.

Species determination - Can we detect and quantify meat adulteration?

Ballin NZ, Vogensen FK, Karlsson AH.

Meat Sci. 2009 Oct;83(2):165-74. doi: 10.1016/j.meatsci.2009.06.003. Epub 2009 Jun 6.

PMID:
20416768
50.

Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults.

Larsen N, Vogensen FK, van den Berg FW, Nielsen DS, Andreasen AS, Pedersen BK, Al-Soud WA, Sørensen SJ, Hansen LH, Jakobsen M.

PLoS One. 2010 Feb 5;5(2):e9085. doi: 10.1371/journal.pone.0009085.

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