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Items: 33

1.

Covariate-assisted spectral clustering.

Binkiewicz N, Vogelstein JT, Rohe K.

Biometrika. 2017 Jun;104(2):361-377. doi: 10.1093/biomet/asx008. Epub 2017 Mar 19.

2.

An M-estimator for reduced-rank system identification.

Chen S, Liu K, Yang Y, Xu Y, Lee S, Lindquist M, Caffo BS, Vogelstein JT.

Pattern Recognit Lett. 2017 Jan 15;86:76-81. doi: 10.1016/j.patrec.2016.12.012. Epub 2016 Dec 19.

3.

Detection and localization of surgically resectable cancers with a multi-analyte blood test.

Cohen JD, Li L, Wang Y, Thoburn C, Afsari B, Danilova L, Douville C, Javed AA, Wong F, Mattox A, Hruban RH, Wolfgang CL, Goggins MG, Dal Molin M, Wang TL, Roden R, Klein AP, Ptak J, Dobbyn L, Schaefer J, Silliman N, Popoli M, Vogelstein JT, Browne JD, Schoen RE, Brand RE, Tie J, Gibbs P, Wong HL, Mansfield AS, Jen J, Hanash SM, Falconi M, Allen PJ, Zhou S, Bettegowda C, Diaz LA Jr, Tomasetti C, Kinzler KW, Vogelstein B, Lennon AM, Papadopoulos N.

Science. 2018 Feb 23;359(6378):926-930. doi: 10.1126/science.aar3247. Epub 2018 Jan 18.

PMID:
29348365
4.

Selected reaction monitoring approach for validating peptide biomarkers.

Wang Q, Zhang M, Tomita T, Vogelstein JT, Zhou S, Papadopoulos N, Kinzler KW, Vogelstein B.

Proc Natl Acad Sci U S A. 2017 Dec 19;114(51):13519-13524. doi: 10.1073/pnas.1712731114. Epub 2017 Dec 4.

5.

Quantifying Mesoscale Neuroanatomy Using X-Ray Microtomography.

Dyer EL, Gray Roncal W, Prasad JA, Fernandes HL, Gürsoy D, De Andrade V, Fezzaa K, Xiao X, Vogelstein JT, Jacobsen C, Körding KP, Kasthuri N.

eNeuro. 2017 Oct 16;4(5). pii: ENEURO.0195-17.2017. doi: 10.1523/ENEURO.0195-17.2017. eCollection 2017 Sep-Oct.

6.

Whole-brain serial-section electron microscopy in larval zebrafish.

Hildebrand DGC, Cicconet M, Torres RM, Choi W, Quan TM, Moon J, Wetzel AW, Scott Champion A, Graham BJ, Randlett O, Plummer GS, Portugues R, Bianco IH, Saalfeld S, Baden AD, Lillaney K, Burns R, Vogelstein JT, Schier AF, Lee WA, Jeong WK, Lichtman JW, Engert F.

Nature. 2017 May 18;545(7654):345-349. doi: 10.1038/nature22356. Epub 2017 May 10.

7.

Probabilistic fluorescence-based synapse detection.

Simhal AK, Aguerrebere C, Collman F, Vogelstein JT, Micheva KD, Weinberg RJ, Smith SJ, Sapiro G.

PLoS Comput Biol. 2017 Apr 17;13(4):e1005493. doi: 10.1371/journal.pcbi.1005493. eCollection 2017 Apr.

8.

Science in the cloud (SIC): A use case in MRI connectomics.

Kiar G, Gorgolewski KJ, Kleissas D, Roncal WG, Litt B, Wandell B, Poldrack RA, Wiener M, Vogelstein RJ, Burns R, Vogelstein JT.

Gigascience. 2017 May 1;6(5):1-10. doi: 10.1093/gigascience/gix013.

9.

A joint graph inference case study: the C. elegans chemical and electrical connectomes.

Chen L, Vogelstein JT, Lyzinski V, Priebe CE.

Worm. 2016 Mar 16;5(2):e1142041. doi: 10.1080/21624054.2016.1142041. eCollection 2016 Apr-Jun.

10.

Factors affecting characterization and localization of interindividual differences in functional connectivity using MRI.

Airan RD, Vogelstein JT, Pillai JJ, Caffo B, Pekar JJ, Sair HI.

Hum Brain Mapp. 2016 May;37(5):1986-97. doi: 10.1002/hbm.23150. Epub 2016 Mar 25.

11.

Graph Matching: Relax at Your Own Risk.

Lyzinski V, Fishkind DE, Fiori M, Vogelstein JT, Priebe CE, Sapiro G.

IEEE Trans Pattern Anal Mach Intell. 2016 Jan;38(1):60-73. doi: 10.1109/TPAMI.2015.2424894.

12.

A resource from 3D electron microscopy of hippocampal neuropil for user training and tool development.

Harris KM, Spacek J, Bell ME, Parker PH, Lindsey LF, Baden AD, Vogelstein JT, Burns R.

Sci Data. 2015 Sep 1;2:150046. doi: 10.1038/sdata.2015.46. eCollection 2015.

13.

Robust Vertex Classification.

Chen L, Shen C, Vogelstein JT, Priebe CE.

IEEE Trans Pattern Anal Mach Intell. 2016 Mar;38(3):578-90. doi: 10.1109/TPAMI.2015.2456913. Epub 2015 Jul 15.

PMID:
26340770
14.

An automated images-to-graphs framework for high resolution connectomics.

Gray Roncal WR, Kleissas DM, Vogelstein JT, Manavalan P, Lillaney K, Pekala M, Burns R, Vogelstein RJ, Priebe CE, Chevillet MA, Hager GD.

Front Neuroinform. 2015 Aug 13;9:20. doi: 10.3389/fninf.2015.00020. eCollection 2015.

15.

Saturated Reconstruction of a Volume of Neocortex.

Kasthuri N, Hayworth KJ, Berger DR, Schalek RL, Conchello JA, Knowles-Barley S, Lee D, Vázquez-Reina A, Kaynig V, Jones TR, Roberts M, Morgan JL, Tapia JC, Seung HS, Roncal WG, Vogelstein JT, Burns R, Sussman DL, Priebe CE, Pfister H, Lichtman JW.

Cell. 2015 Jul 30;162(3):648-61. doi: 10.1016/j.cell.2015.06.054.

16.

Fast approximate quadratic programming for graph matching.

Vogelstein JT, Conroy JM, Lyzinski V, Podrazik LJ, Kratzer SG, Harley ET, Fishkind DE, Vogelstein RJ, Priebe CE.

PLoS One. 2015 Apr 17;10(4):e0121002. doi: 10.1371/journal.pone.0121002. eCollection 2015.

17.

From cosmos to connectomes: the evolution of data-intensive science.

Burns R, Vogelstein JT, Szalay AS.

Neuron. 2014 Sep 17;83(6):1249-52. doi: 10.1016/j.neuron.2014.08.045. Review.

18.

A comparison of supervised machine learning algorithms and feature vectors for MS lesion segmentation using multimodal structural MRI.

Sweeney EM, Vogelstein JT, Cuzzocreo JL, Calabresi PA, Reich DS, Crainiceanu CM, Shinohara RT.

PLoS One. 2014 Apr 29;9(4):e95753. doi: 10.1371/journal.pone.0095753. eCollection 2014.

19.

Discovery of brainwide neural-behavioral maps via multiscale unsupervised structure learning.

Vogelstein JT, Park Y, Ohyama T, Kerr RA, Truman JW, Priebe CE, Zlatic M.

Science. 2014 Apr 25;344(6182):386-92. doi: 10.1126/science.1250298. Epub 2014 Mar 27.

20.

The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience.

Burns R, Roncal WG, Kleissas D, Lillaney K, Manavalan P, Perlman E, Berger DR, Bock DD, Chung K, Grosenick L, Kasthuri N, Weiler NC, Deisseroth K, Kazhdan M, Lichtman J, Reid RC, Smith SJ, Szalay AS, Vogelstein JT, Vogelstein RJ.

Sci Stat Database Manag. 2013. doi: 10.1145/2484838.2484870.

21.

Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

Weiler NC, Collman F, Vogelstein JT, Burns R, Smith SJ.

Sci Data. 2014 Dec 23;1:140046. doi: 10.1038/sdata.2014.46. eCollection 2014.

22.

Multichannel electrophysiological spike sorting via joint dictionary learning and mixture modeling.

Carlson DE, Vogelstein JT, Qisong Wu, Wenzhao Lian, Mingyuan Zhou, Stoetzner CR, Kipke D, Weber D, Dunson DB, Carin L.

IEEE Trans Biomed Eng. 2014 Jan;61(1):41-54. doi: 10.1109/TBME.2013.2275751. Epub 2013 Jul 30.

PMID:
23912463
23.

Imaging human connectomes at the macroscale.

Craddock RC, Jbabdi S, Yan CG, Vogelstein JT, Castellanos FX, Di Martino A, Kelly C, Heberlein K, Colcombe S, Milham MP.

Nat Methods. 2013 Jun;10(6):524-39. doi: 10.1038/nmeth.2482. Review.

24.

Graph classification using signal-subgraphs: applications in statistical connectomics.

Vogelstein JT, Gray Roncal W, Vogelstein RJ, Priebe CE.

IEEE Trans Pattern Anal Mach Intell. 2013 Jul;35(7):1539-51. doi: 10.1109/TPAMI.2012.235.

PMID:
23681985
25.

Magnetic resonance connectome automated pipeline: an overview.

Gray WR, Bogovic JA, Vogelstein JT, Landman BA, Prince JL, Vogelstein RJ.

IEEE Pulse. 2012 Mar;3(2):42-8. doi: 10.1109/MPUL.2011.2181023. Review.

PMID:
22481745
26.

The predictive capacity of personal genome sequencing.

Roberts NJ, Vogelstein JT, Parmigiani G, Kinzler KW, Vogelstein B, Velculescu VE.

Sci Transl Med. 2012 May 9;4(133):133ra58. doi: 10.1126/scitranslmed.3003380. Epub 2012 Apr 2.

27.

Are mental properties supervenient on brain properties?

Vogelstein JT, Vogelstein RJ, Priebe CE.

Sci Rep. 2011;1:100. doi: 10.1038/srep00100. Epub 2011 Sep 26.

28.

Q&A: What is the Open Connectome Project?

Vogelstein JT.

Neural Syst Circuits. 2011 Nov 18;1(1):16. doi: 10.1186/2042-1001-1-16. No abstract available.

29.

Fast nonnegative deconvolution for spike train inference from population calcium imaging.

Vogelstein JT, Packer AM, Machado TA, Sippy T, Babadi B, Yuste R, Paninski L.

J Neurophysiol. 2010 Dec;104(6):3691-704. doi: 10.1152/jn.01073.2009. Epub 2010 Jun 16.

30.

Spike inference from calcium imaging using sequential Monte Carlo methods.

Vogelstein JT, Watson BO, Packer AM, Yuste R, Jedynak B, Paninski L.

Biophys J. 2009 Jul 22;97(2):636-55. doi: 10.1016/j.bpj.2008.08.005.

31.

Dynamically reconfigurable silicon array of spiking neurons with conductance-based synapses.

Vogelstein RJ, Mallik U, Vogelstein JT, Cauwenberghs G.

IEEE Trans Neural Netw. 2007 Jan;18(1):253-65.

PMID:
17278476
32.

Accuracy of saccades to remembered targets as a function of body orientation in space.

Vogelstein JT, Snyder LH, Angelaki DE.

J Neurophysiol. 2003 Jul;90(1):521-4.

33.

Loss of FHIT expression in cervical carcinoma cell lines and primary tumors.

Greenspan DL, Connolly DC, Wu R, Lei RY, Vogelstein JT, Kim YT, Mok JE, Muñoz N, Bosch FX, Shah K, Cho KR.

Cancer Res. 1997 Nov 1;57(21):4692-8.

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