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Items: 1 to 50 of 94

1.

Ultrasound-assisted epidural labor analgesia for landmark identification in morbidly obese pregnant women: A preliminary investigation.

Vernon TJ, Vogel TM, Dalby PL, Mandell G, Lim G.

J Clin Anesth. 2019 Jun 18;59:53-54. doi: 10.1016/j.jclinane.2019.05.023. [Epub ahead of print] No abstract available.

PMID:
31226533
2.

Sources and selection of snow-specific microbial communities in a Greenlandic sea ice snow cover.

Maccario L, Carpenter SD, Deming JW, Vogel TM, Larose C.

Sci Rep. 2019 Feb 19;9(1):2290. doi: 10.1038/s41598-019-38744-y.

3.

Evolution of Sphingomonad Gene Clusters Related to Pesticide Catabolism Revealed by Genome Sequence and Mobilomics of Sphingobium herbicidovorans MH.

Nielsen TK, Rasmussen M, Demanèche S, Cecillon S, Vogel TM, Hansen LH.

Genome Biol Evol. 2017 Sep 1;9(9):2477-2490. doi: 10.1093/gbe/evx185.

4.

Combined iron and sulfate reduction biostimulation as a novel approach to enhance BTEX and PAH source-zone biodegradation in biodiesel blend-contaminated groundwater.

Müller JB, Ramos DT, Larose C, Fernandes M, Lazzarin HS, Vogel TM, Corseuil HX.

J Hazard Mater. 2017 Mar 15;326:229-236. doi: 10.1016/j.jhazmat.2016.12.005. Epub 2016 Dec 5.

PMID:
28033549
5.

A Modified Approach for in Situ Chemical Oxidation Coupled to Biodegradation Enhances Light Nonaqueous Phase Liquid Source-Zone Remediation.

Fedrizzi F, Ramos DT, Lazzarin HS, Fernandes M, Larose C, Vogel TM, Corseuil HX.

Environ Sci Technol. 2017 Jan 3;51(1):463-472. doi: 10.1021/acs.est.6b03604. Epub 2016 Dec 9.

PMID:
27935684
6.

Microbial fuel cell anodic microbial population dynamics during MFC start-up.

Paitier A, Godain A, Lyon D, Haddour N, Vogel TM, Monier JM.

Biosens Bioelectron. 2017 Jun 15;92:357-363. doi: 10.1016/j.bios.2016.10.096. Epub 2016 Nov 2.

PMID:
27836597
7.

Biodiesel presence in the source zone hinders aromatic hydrocarbons attenuation in a B20-contaminated groundwater.

Ramos DT, Lazzarin HSC, Alvarez PJJ, Vogel TM, Fernandes M, do Rosário M, Corseuil HX.

J Contam Hydrol. 2016 Oct;193:48-53. doi: 10.1016/j.jconhyd.2016.09.002. Epub 2016 Sep 8.

PMID:
27636988
8.

Back to the Future of Soil Metagenomics.

Nesme J, Achouak W, Agathos SN, Bailey M, Baldrian P, Brunel D, Frostegård Å, Heulin T, Jansson JK, Jurkevitch E, Kruus KL, Kowalchuk GA, Lagares A, Lappin-Scott HM, Lemanceau P, Le Paslier D, Mandic-Mulec I, Murrell JC, Myrold DD, Nalin R, Nannipieri P, Neufeld JD, O'Gara F, Parnell JJ, Pühler A, Pylro V, Ramos JL, Roesch LF, Schloter M, Schleper C, Sczyrba A, Sessitsch A, Sjöling S, Sørensen J, Sørensen SJ, Tebbe CC, Topp E, Tsiamis G, van Elsas JD, van Keulen G, Widmer F, Wagner M, Zhang T, Zhang X, Zhao L, Zhu YG, Vogel TM, Simonet P.

Front Microbiol. 2016 Feb 10;7:73. doi: 10.3389/fmicb.2016.00073. eCollection 2016. No abstract available.

9.

Snow and ice ecosystems: not so extreme.

Maccario L, Sanguino L, Vogel TM, Larose C.

Res Microbiol. 2015 Dec;166(10):782-95. doi: 10.1016/j.resmic.2015.09.002. Epub 2015 Sep 25. Review.

PMID:
26408452
10.

Functional Basis of Microorganism Classification.

Zhu C, Delmont TO, Vogel TM, Bromberg Y.

PLoS Comput Biol. 2015 Aug 28;11(8):e1004472. doi: 10.1371/journal.pcbi.1004472. eCollection 2015 Aug.

11.

Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics.

Delmont TO, Eren AM, Maccario L, Prestat E, Esen ÖC, Pelletier E, Le Paslier D, Simonet P, Vogel TM.

Front Microbiol. 2015 Apr 30;6:358. doi: 10.3389/fmicb.2015.00358. eCollection 2015.

12.

Linking environmental prokaryotic viruses and their host through CRISPRs.

Sanguino L, Franqueville L, Vogel TM, Larose C.

FEMS Microbiol Ecol. 2015 May;91(5). pii: fiv046. doi: 10.1093/femsec/fiv046. Epub 2015 Apr 22.

PMID:
25908869
13.

Potential drivers of microbial community structure and function in Arctic spring snow.

Maccario L, Vogel TM, Larose C.

Front Microbiol. 2014 Aug 7;5:413. doi: 10.3389/fmicb.2014.00413. eCollection 2014.

14.

Ethyl tert-butyl ether (ETBE)-degrading microbial communities in enrichments from polluted environments.

Le Digabel Y, Demanèche S, Benoit Y, Fayolle-Guichard F, Vogel TM.

J Hazard Mater. 2014 Aug 30;279:502-10. doi: 10.1016/j.jhazmat.2014.07.013. Epub 2014 Jul 16.

PMID:
25108826
15.

Large-scale metagenomic-based study of antibiotic resistance in the environment.

Nesme J, Cécillon S, Delmont TO, Monier JM, Vogel TM, Simonet P.

Curr Biol. 2014 May 19;24(10):1096-100. doi: 10.1016/j.cub.2014.03.036. Epub 2014 May 8.

16.

Characterization of new bacterial catabolic genes and mobile genetic elements by high throughput genetic screening of a soil metagenomic library.

Jacquiod S, Demanèche S, Franqueville L, Ausec L, Xu Z, Delmont TO, Dunon V, Cagnon C, Mandic-Mulec I, Vogel TM, Simonet P.

J Biotechnol. 2014 Nov 20;190:18-29. doi: 10.1016/j.jbiotec.2014.03.036. Epub 2014 Apr 8.

PMID:
24721211
17.

Microbial ecology of chlorinated solvent biodegradation.

David MM, Cecillon S, Warne BM, Prestat E, Jansson JK, Vogel TM.

Environ Microbiol. 2015 Dec;17(12):4835-50. doi: 10.1111/1462-2920.12413. Epub 2014 Mar 17.

PMID:
24517489
18.

The future of skin metagenomics.

Mathieu A, Vogel TM, Simonet P.

Res Microbiol. 2014 Feb-Mar;165(2):69-76. doi: 10.1016/j.resmic.2013.12.002. Epub 2013 Dec 20. Review.

PMID:
24361423
19.

Interactions between snow chemistry, mercury inputs and microbial population dynamics in an Arctic snowpack.

Larose C, Prestat E, Cecillon S, Berger S, Malandain C, Lyon D, Ferrari C, Schneider D, Dommergue A, Vogel TM.

PLoS One. 2013 Nov 25;8(11):e79972. doi: 10.1371/journal.pone.0079972. eCollection 2013.

20.

Soil bacterial community shifts after chitin enrichment: an integrative metagenomic approach.

Jacquiod S, Franqueville L, Cécillon S, Vogel TM, Simonet P.

PLoS One. 2013 Nov 20;8(11):e79699. doi: 10.1371/journal.pone.0079699. eCollection 2013.

21.

Selective occurrence of Rhizobiales in frost flowers on the surface of young sea ice near Barrow, Alaska and distribution in the polar marine rare biosphere.

Bowman JS, Larose C, Vogel TM, Deming JW.

Environ Microbiol Rep. 2013 Aug;5(4):575-82. doi: 10.1111/1758-2229.12047. Epub 2013 Apr 8.

PMID:
23864572
22.

Life on human surfaces: skin metagenomics.

Mathieu A, Delmont TO, Vogel TM, Robe P, Nalin R, Simonet P.

PLoS One. 2013 Jun 12;8(6):e65288. doi: 10.1371/journal.pone.0065288. Print 2013.

23.

Mastering methodological pitfalls for surviving the metagenomic jungle.

Delmont TO, Simonet P, Vogel TM.

Bioessays. 2013 Aug;35(8):744-54. doi: 10.1002/bies.201200155. Epub 2013 Jun 11.

PMID:
23757040
24.

Ethyl tert-butyl ether (ETBE) biodegradation by a syntrophic association of Rhodococcus sp. IFP 2042 and Bradyrhizobium sp. IFP 2049 isolated from a polluted aquifer.

Le Digabel Y, Demanèche S, Benoit Y, Vogel TM, Fayolle-Guichard F.

Appl Microbiol Biotechnol. 2013 Dec;97(24):10531-9. doi: 10.1007/s00253-013-4803-3. Epub 2013 Mar 10.

PMID:
23474617
25.

The dynamic arctic snow pack: an unexplored environment for microbial diversity and activity.

Larose C, Dommergue A, Vogel TM.

Biology (Basel). 2013 Feb 5;2(1):317-30. doi: 10.3390/biology2010317.

26.

Describing microbial communities and performing global comparisons in the 'omic era.

Delmont TO, Simonet P, Vogel TM.

ISME J. 2012 Sep;6(9):1625-8. doi: 10.1038/ismej.2012.55. Epub 2012 Jun 21. No abstract available.

27.

In situ TCE degradation mediated by complex dehalorespiring communities during biostimulation processes.

Dugat-Bony E, Biderre-Petit C, Jaziri F, David MM, Denonfoux J, Lyon DY, Richard JY, Curvers C, Boucher D, Vogel TM, Peyretaillade E, Peyret P.

Microb Biotechnol. 2012 Sep;5(5):642-53. doi: 10.1111/j.1751-7915.2012.00339.x. Epub 2012 Mar 21.

28.

Structure, fluctuation and magnitude of a natural grassland soil metagenome.

Delmont TO, Prestat E, Keegan KP, Faubladier M, Robe P, Clark IM, Pelletier E, Hirsch PR, Meyer F, Gilbert JA, Le Paslier D, Simonet P, Vogel TM.

ISME J. 2012 Sep;6(9):1677-87. doi: 10.1038/ismej.2011.197. Epub 2012 Feb 2.

29.

Metagenomic comparison of direct and indirect soil DNA extraction approaches.

Delmont TO, Robe P, Clark I, Simonet P, Vogel TM.

J Microbiol Methods. 2011 Sep;86(3):397-400. doi: 10.1016/j.mimet.2011.06.013. Epub 2011 Jun 25.

PMID:
21723887
30.

Metagenomic exploration of antibiotic resistance in soil.

Monier JM, Demanèche S, Delmont TO, Mathieu A, Vogel TM, Simonet P.

Curr Opin Microbiol. 2011 Jun;14(3):229-35. doi: 10.1016/j.mib.2011.04.010. Epub 2011 May 23. Review.

PMID:
21601510
31.

Metagenomic mining for microbiologists.

Delmont TO, Malandain C, Prestat E, Larose C, Monier JM, Simonet P, Vogel TM.

ISME J. 2011 Dec;5(12):1837-43. doi: 10.1038/ismej.2011.61. Epub 2011 May 19.

32.

The importance of metagenomic surveys to microbial ecology: or why Darwin would have been a metagenomic scientist.

Gilbert JA, O'Dor R, King N, Vogel TM.

Microb Inform Exp. 2011 Jun 14;1(1):5. doi: 10.1186/2042-5783-1-5.

33.

Accessing the soil metagenome for studies of microbial diversity.

Delmont TO, Robe P, Cecillon S, Clark IM, Constancias F, Simonet P, Hirsch PR, Vogel TM.

Appl Environ Microbiol. 2011 Feb;77(4):1315-24. doi: 10.1128/AEM.01526-10. Epub 2010 Dec 23.

34.

Monitoring of bacterial communities during low temperature thermal treatment of activated sludge combining DNA phylochip and respirometry techniques.

Héry M, Sanguin H, Perez Fabiel S, Lefebvre X, Vogel TM, Paul E, Alfenore S.

Water Res. 2010 Dec;44(20):6133-43. doi: 10.1016/j.watres.2010.07.003. Epub 2010 Jul 30.

PMID:
20673948
35.

Long-term persistence and bacterial transformation potential of transplastomic plant DNA in soil.

Pontiroli A, Ceccherini MT, Poté J, Wildi W, Kay E, Nannipieri P, Vogel TM, Simonet P, Monier JM.

Res Microbiol. 2010 Jun;161(5):326-34. doi: 10.1016/j.resmic.2010.04.009. Epub 2010 May 20.

PMID:
20493252
36.

Integrity and biological activity of DNA after UV exposure.

Lyon DY, Monier JM, Dupraz S, Freissinet C, Simonet P, Vogel TM.

Astrobiology. 2010 Apr;10(3):285-92. doi: 10.1089/ast.2009.0359.

PMID:
20446869
37.

Comparative phylogenetic microarray analysis of microbial communities in TCE-contaminated soils.

Nemir A, David MM, Perrussel R, Sapkota A, Simonet P, Monier JM, Vogel TM.

Chemosphere. 2010 Jul;80(5):600-7. doi: 10.1016/j.chemosphere.2010.03.036. Epub 2010 May 4.

PMID:
20444493
38.

Cytochromes P450-mediated degradation of fuel oxygenates by environmental isolates.

Malandain C, Fayolle-Guichard F, Vogel TM.

FEMS Microbiol Ecol. 2010 May;72(2):289-96. doi: 10.1111/j.1574-6941.2010.00847.x. Epub 2010 Feb 11.

39.

Microbial sequences retrieved from environmental samples from seasonal arctic snow and meltwater from Svalbard, Norway.

Larose C, Berger S, Ferrari C, Navarro E, Dommergue A, Schneider D, Vogel TM.

Extremophiles. 2010 Mar;14(2):205-12. doi: 10.1007/s00792-009-0299-2.

PMID:
20066448
40.

Human pathogens abundant in the bacterial metagenome of cigarettes.

Sapkota AR, Berger S, Vogel TM.

Environ Health Perspect. 2010 Mar;118(3):351-6. doi: 10.1289/ehp.0901201. Epub 2009 Oct 22.

41.

Leaching and transformability of transgenic DNA in unsaturated soil columns.

Poté J, Teresa Ceccherini M, Rosselli W, Wildi W, Simonet P, Vogel TM.

Ecotoxicol Environ Saf. 2010 Jan;73(1):67-72. doi: 10.1016/j.ecoenv.2009.09.009. Epub 2009 Oct 13.

PMID:
19828198
42.

Is resistance futile? Changing external resistance does not improve microbial fuel cell performance.

Lyon DY, Buret F, Vogel TM, Monier JM.

Bioelectrochemistry. 2010 Apr;78(1):2-7. doi: 10.1016/j.bioelechem.2009.09.001. Epub 2009 Sep 12.

PMID:
19783225
43.

Visual evidence of horizontal gene transfer between plants and bacteria in the phytosphere of transplastomic tobacco.

Pontiroli A, Rizzi A, Simonet P, Daffonchio D, Vogel TM, Monier JM.

Appl Environ Microbiol. 2009 May;75(10):3314-22. doi: 10.1128/AEM.02632-08. Epub 2009 Mar 27.

44.

Extracellular plant DNA in Geneva groundwater and traditional artesian drinking water fountains.

Poté J, Mavingui P, Navarro E, Rosselli W, Wildi W, Simonet P, Vogel TM.

Chemosphere. 2009 Apr;75(4):498-504. doi: 10.1016/j.chemosphere.2008.12.048. Epub 2009 Jan 25.

PMID:
19171370
45.

Characterization of denitrification gene clusters of soil bacteria via a metagenomic approach.

Demanèche S, Philippot L, David MM, Navarro E, Vogel TM, Simonet P.

Appl Environ Microbiol. 2009 Jan;75(2):534-7. doi: 10.1128/AEM.01706-08. Epub 2008 Nov 14.

46.

Evaluation of functional gene enrichment in a soil metagenomic clone library.

Demanèche S, David MM, Navarro E, Simonet P, Vogel TM.

J Microbiol Methods. 2009 Jan;76(1):105-7. doi: 10.1016/j.mimet.2008.09.009. Epub 2008 Sep 17.

PMID:
18922230
47.

Microbial community networks.

Smalla K, Tebbe CC, van Elsas JD, Vogel TM.

FEMS Microbiol Ecol. 2008 Oct;66(1):1-2. doi: 10.1111/j.1574-6941.2008.00596.x. No abstract available.

48.

The metagenomics of disease-suppressive soils - experiences from the METACONTROL project.

van Elsas JD, Costa R, Jansson J, Sjöling S, Bailey M, Nalin R, Vogel TM, van Overbeek L.

Trends Biotechnol. 2008 Nov;26(11):591-601. doi: 10.1016/j.tibtech.2008.07.004. Epub 2008 Sep 4. Review.

PMID:
18774191
49.

Drugs from hidden bugs: their discovery via untapped resources.

Lefevre F, Robe P, Jarrin C, Ginolhac A, Zago C, Auriol D, Vogel TM, Simonet P, Nalin R.

Res Microbiol. 2008 Apr;159(3):153-61. doi: 10.1016/j.resmic.2007.12.011. Epub 2008 Feb 12. Review.

PMID:
18375103
50.

A novel and rapid method for synthesizing positive controls and standards for quantitative PCR.

David MM, Sapkota AR, Simonet P, Vogel TM.

J Microbiol Methods. 2008 Apr;73(1):73-7. doi: 10.1016/j.mimet.2008.01.001. Epub 2008 Jan 10.

PMID:
18313777

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