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Items: 1 to 50 of 58

1.

FRET as a biomolecular research tool - understanding its potential while avoiding pitfalls.

Algar WR, Hildebrandt N, Vogel SS, Medintz IL.

Nat Methods. 2019 Sep;16(9):815-829. doi: 10.1038/s41592-019-0530-8. Epub 2019 Aug 30. Review.

PMID:
31471616
2.

VenusA206 Dimers Behave Coherently at Room Temperature.

Kim Y, Puhl HL 3rd, Chen E, Taumoefolau GH, Nguyen TA, Kliger DS, Blank PS, Vogel SS.

Biophys J. 2019 May 21;116(10):1918-1930. doi: 10.1016/j.bpj.2019.04.014. Epub 2019 Apr 22.

PMID:
31060812
3.

Auto-FPFA: An Automated Microscope for Characterizing Genetically Encoded Biosensors.

Nguyen TA, Puhl HL 3rd, Pham AK, Vogel SS.

Sci Rep. 2018 May 9;8(1):7374. doi: 10.1038/s41598-018-25689-x.

4.

Deciphering CaMKII Multimerization Using Fluorescence Correlation Spectroscopy and Homo-FRET Analysis.

Sarkar P, Davis KA, Puhl HL 3rd, Veetil JV, Nguyen TA, Vogel SS.

Biophys J. 2017 Mar 28;112(6):1270-1281. doi: 10.1016/j.bpj.2017.02.005.

5.

Zinc-Induced Polymerization of Killer-Cell Ig-like Receptor into Filaments Promotes Its Inhibitory Function at Cytotoxic Immunological Synapses.

Kumar S, Rajagopalan S, Sarkar P, Dorward DW, Peterson ME, Liao HS, Guillermier C, Steinhauser ML, Vogel SS, Long EO.

Mol Cell. 2016 Apr 7;62(1):21-33. doi: 10.1016/j.molcel.2016.03.009.

6.

Covert Changes in CaMKII Holoenzyme Structure Identified for Activation and Subsequent Interactions.

Nguyen TA, Sarkar P, Veetil JV, Davis KA, Puhl HL 3rd, Vogel SS.

Biophys J. 2015 May 5;108(9):2158-70. doi: 10.1016/j.bpj.2015.03.028.

7.

A single amino acid change in inhibitory killer cell Ig-like receptor results in constitutive receptor self-association and phosphorylation.

Kumar S, Sarkar P, Sim MJ, Rajagopalan S, Vogel SS, Long EO.

J Immunol. 2015 Jan 15;194(2):817-26. doi: 10.4049/jimmunol.1401830. Epub 2014 Dec 12.

8.

Deep brain optical measurements of cell type-specific neural activity in behaving mice.

Cui G, Jun SB, Jin X, Luo G, Pham MD, Lovinger DM, Vogel SS, Costa RM.

Nat Protoc. 2014;9(6):1213-28. doi: 10.1038/nprot.2014.080. Epub 2014 May 1.

9.

Size, stoichiometry, and organization of soluble LC3-associated complexes.

Kraft LJ, Nguyen TA, Vogel SS, Kenworthy AK.

Autophagy. 2014 May;10(5):861-77. doi: 10.4161/auto.28175. Epub 2014 Mar 10.

10.

Dysferlin stabilizes stress-induced Ca2+ signaling in the transverse tubule membrane.

Kerr JP, Ziman AP, Mueller AL, Muriel JM, Kleinhans-Welte E, Gumerson JD, Vogel SS, Ward CW, Roche JA, Bloch RJ.

Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20831-6. doi: 10.1073/pnas.1307960110. Epub 2013 Dec 3.

11.

Estimating the distance separating fluorescent protein FRET pairs.

Vogel SS, van der Meer BW, Blank PS.

Methods. 2014 Mar 15;66(2):131-8. doi: 10.1016/j.ymeth.2013.06.021. Epub 2013 Jun 25.

12.

Concurrent activation of striatal direct and indirect pathways during action initiation.

Cui G, Jun SB, Jin X, Pham MD, Vogel SS, Lovinger DM, Costa RM.

Nature. 2013 Feb 14;494(7436):238-42. doi: 10.1038/nature11846. Epub 2013 Jan 23.

13.

The impact of heterogeneity and dark acceptor states on FRET: implications for using fluorescent protein donors and acceptors.

Vogel SS, Nguyen TA, van der Meer BW, Blank PS.

PLoS One. 2012;7(11):e49593. doi: 10.1371/journal.pone.0049593. Epub 2012 Nov 13. Erratum in: PLoS One. 2013;8(1). doi:10.1371/annotation/ea42b98e-12b7-4940-8c4e-6142dedbb997.

14.

Fluorescence polarization and fluctuation analysis monitors subunit proximity, stoichiometry, and protein complex hydrodynamics.

Nguyen TA, Sarkar P, Veetil JV, Koushik SV, Vogel SS.

PLoS One. 2012;7(5):e38209. doi: 10.1371/journal.pone.0038209. Epub 2012 May 30.

15.

FRET 65: a celebration of Förster.

Periasamy A, Vogel SS, Clegg RM.

J Biomed Opt. 2012 Jan;17(1):011001. doi: 10.1117/1.JBO.17.1.011001. No abstract available.

16.

Membrane wounding triggers ATP release and dysferlin-mediated intercellular calcium signaling.

Covian-Nares JF, Koushik SV, Puhl HL 3rd, Vogel SS.

J Cell Sci. 2010 Jun 1;123(Pt 11):1884-93. doi: 10.1242/jcs.066084. Epub 2010 May 4.

17.

Channeling calcium: a shared mechanism for exocytosis-endocytosis coupling.

Vogel SS.

Sci Signal. 2009 Dec 22;2(102):pe80. doi: 10.1126/scisignal.2102pe80.

PMID:
20029028
18.

Anomalous surplus energy transfer observed with multiple FRET acceptors.

Koushik SV, Blank PS, Vogel SS.

PLoS One. 2009 Nov 25;4(11):e8031. doi: 10.1371/journal.pone.0008031.

19.

Photophysical properties of Cerulean and Venus fluorescent proteins.

Sarkar P, Koushik SV, Vogel SS, Gryczynski I, Gryczynski Z.

J Biomed Opt. 2009 May-Jun;14(3):034047. doi: 10.1117/1.3156842.

20.

Structural rearrangement of CaMKIIalpha catalytic domains encodes activation.

Thaler C, Koushik SV, Puhl HL 3rd, Blank PS, Vogel SS.

Proc Natl Acad Sci U S A. 2009 Apr 14;106(15):6369-74. doi: 10.1073/pnas.0901913106. Epub 2009 Apr 1.

21.

Energy migration alters the fluorescence lifetime of Cerulean: implications for fluorescence lifetime imaging Forster resonance energy transfer measurements.

Koushik SV, Vogel SS.

J Biomed Opt. 2008 May-Jun;13(3):031204. doi: 10.1117/1.2940367. Erratum in: J Biomed Opt. 2008 Jul-Aug;13(4):049801.

22.

Two independent forms of endocytosis maintain embryonic cell surface homeostasis during early development.

Covian-Nares JF, Smith RM, Vogel SS.

Dev Biol. 2008 Apr 1;316(1):135-48. doi: 10.1016/j.ydbio.2008.01.017. Epub 2008 Jan 26.

23.

Cerulean, Venus, and VenusY67C FRET reference standards.

Koushik SV, Chen H, Thaler C, Puhl HL 3rd, Vogel SS.

Biophys J. 2006 Dec 15;91(12):L99-L101. Epub 2006 Oct 13.

24.
25.

Measurement of FRET efficiency and ratio of donor to acceptor concentration in living cells.

Chen H, Puhl HL 3rd, Koushik SV, Vogel SS, Ikeda SR.

Biophys J. 2006 Sep 1;91(5):L39-41. Epub 2006 Jun 30.

26.

Photobleaching of YFP does not produce a CFP-like species that affects FRET measurements.

Thaler C, Vogel SS, Ikeda SR, Chen H.

Nat Methods. 2006 Jul;3(7):491; author reply 492-3. No abstract available.

PMID:
16791204
27.

Fanciful FRET.

Vogel SS, Thaler C, Koushik SV.

Sci STKE. 2006 Apr 18;2006(331):re2. Review.

PMID:
16622184
28.

Quantitative multiphoton spectral imaging and its use for measuring resonance energy transfer.

Thaler C, Koushik SV, Blank PS, Vogel SS.

Biophys J. 2005 Oct;89(4):2736-49. Epub 2005 Jul 22.

29.

An increase in surface area is not required for cell division in early sea urchin development.

Frejtag W, Burnette J, Kang B, Smith RM, Vogel SS.

Dev Biol. 2003 Jul 1;259(1):62-70.

30.

Defective membrane repair in dysferlin-deficient muscular dystrophy.

Bansal D, Miyake K, Vogel SS, Groh S, Chen CC, Williamson R, McNeil PL, Campbell KP.

Nature. 2003 May 8;423(6936):168-72.

PMID:
12736685
31.

The endomembrane requirement for cell surface repair.

McNeil PL, Miyake K, Vogel SS.

Proc Natl Acad Sci U S A. 2003 Apr 15;100(8):4592-7. Epub 2003 Apr 2.

32.

Low pH inhibits compensatory endocytosis at a step between depolarization and calcium influx.

Smith RM, Baibakov B, Lambert NA, Vogel SS.

Traffic. 2002 Jun;3(6):397-406.

33.

Plasma membrane resident 'fusion complexes' mediate reconstituted exocytosis.

Ikebuchi Y, Baibakov B, Smith RM, Vogel SS.

Traffic. 2001 Sep;2(9):654-67.

34.

A kinetic analysis of calcium-triggered exocytosis.

Blank PS, Vogel SS, Malley JD, Zimmerberg J.

J Gen Physiol. 2001 Aug;118(2):145-56.

35.

Analysis of pancreatic development in living transgenic zebrafish embryos.

Huang H, Vogel SS, Liu N, Melton DA, Lin S.

Mol Cell Endocrinol. 2001 May 25;177(1-2):117-24.

PMID:
11377827
36.

Concurrent expression of recombination activating genes 1 and 2 in zebrafish olfactory sensory neurons.

Jessen JR, Jessen TN, Vogel SS, Lin S.

Genesis. 2001 Apr;29(4):156-62.

PMID:
11309848
37.

Patching plasma membrane disruptions with cytoplasmic membrane.

McNeil PL, Vogel SS, Miyake K, Terasaki M.

J Cell Sci. 2000 Jun;113 ( Pt 11):1891-902.

38.

Exocytotic insertion of calcium channels constrains compensatory endocytosis to sites of exocytosis.

Smith RM, Baibakov B, Ikebuchi Y, White BH, Lambert NA, Kaczmarek LK, Vogel SS.

J Cell Biol. 2000 Feb 21;148(4):755-67.

39.

Sea urchin egg preparations as systems for the study of calcium-triggered exocytosis.

Zimmerberg J, Coorssen JR, Vogel SS, Blank PS.

J Physiol. 1999 Oct 1;520 Pt 1:15-21. Review.

40.

Calcium influx is required for endocytotic membrane retrieval.

Vogel SS, Smith RM, Baibakov B, Ikebuchi Y, Lambert NA.

Proc Natl Acad Sci U S A. 1999 Apr 27;96(9):5019-24.

41.

The calcium sensitivity of individual secretory vesicles is invariant with the rate of calcium delivery.

Blank PS, Vogel SS, Cho MS, Kaplan D, Bhuva D, Malley J, Zimmerberg J.

J Gen Physiol. 1998 Nov;112(5):569-76.

42.

Submaximal responses in calcium-triggered exocytosis are explained by differences in the calcium sensitivity of individual secretory vesicles.

Blank PS, Cho MS, Vogel SS, Kaplan D, Kang A, Malley J, Zimmerberg J.

J Gen Physiol. 1998 Nov;112(5):559-67.

43.

Reconstitution of calcium-triggered membrane fusion using "reserve" granules.

Chestkov VV, Radko SP, Cho MS, Chrambach A, Vogel SS.

J Biol Chem. 1998 Jan 23;273(4):2445-51.

44.
45.

Direct membrane retrieval into large vesicles after exocytosis in sea urchin eggs.

Whalley T, Terasaki M, Cho MS, Vogel SS.

J Cell Biol. 1995 Dec;131(5):1183-92.

46.

Application of a membrane fusion assay for rapid drug screening.

Vogel SS, Beushausen S, Lester DS.

Pharm Res. 1995 Oct;12(10):1417-22.

PMID:
8584473
47.

Intermediates in membrane fusion.

Zimmerberg J, Vogel SS, Whalley T, Plonsky I, Sokoloff A, Chanturia A, Chernomordik LV.

Cold Spring Harb Symp Quant Biol. 1995;60:589-99. No abstract available.

PMID:
8824432
48.
49.

Lysolipids reversibly inhibit Ca(2+)-, GTP- and pH-dependent fusion of biological membranes.

Chernomordik LV, Vogel SS, Sokoloff A, Onaran HO, Leikina EA, Zimmerberg J.

FEBS Lett. 1993 Feb 22;318(1):71-6.

50.

Mechanisms of membrane fusion.

Zimmerberg J, Vogel SS, Chernomordik LV.

Annu Rev Biophys Biomol Struct. 1993;22:433-66. Review. No abstract available.

PMID:
8347997

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