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Correlation-based network analysis combined with machine learning techniques highlight the role of the GABA shunt in Brachypodium sylvaticum freezing tolerance.

Toubiana D, Sade N, Liu L, Rubio Wilhelmi MDM, Brotman Y, Luzarowska U, Vogel JP, Blumwald E.

Sci Rep. 2020 Mar 11;10(1):4489. doi: 10.1038/s41598-020-61081-4.


Publisher Correction: In vivo structure of the Legionella type II secretion system by electron cryotomography.

Ghosal D, Kim KW, Zheng H, Kaplan M, Truchan HK, Lopez AE, McIntire IE, Vogel JP, Cianciotto NP, Jensen GJ.

Nat Microbiol. 2020 Apr;5(4):651. doi: 10.1038/s41564-020-0693-1.


Non-clinical interventions to reduce unnecessary caesarean sections: WHO recommendations.

Opiyo N, Kingdon C, Oladapo OT, Souza JP, Vogel JP, Bonet M, Bucagu M, Portela A, McConville F, Downe S, Gülmezoglu AM, Betrán AP.

Bull World Health Organ. 2020 Jan 1;98(1):66-68. doi: 10.2471/BLT.19.236729. Epub 2019 Nov 29. No abstract available.


Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses.

Varoquaux N, Cole B, Gao C, Pierroz G, Baker CR, Patel D, Madera M, Jeffers T, Hollingsworth J, Sievert J, Yoshinaga Y, Owiti JA, Singan VR, DeGraaf S, Xu L, Blow MJ, Harrison MJ, Visel A, Jansson C, Niyogi KK, Hutmacher R, Coleman-Derr D, O'Malley RC, Taylor JW, Dahlberg J, Vogel JP, Lemaux PG, Purdom E.

Proc Natl Acad Sci U S A. 2019 Dec 5. pii: 201907500. doi: 10.1073/pnas.1907500116. [Epub ahead of print]


Maternal and newborn health indicators in Papua New Guinea - 2008-2018.

Robbers G, Vogel JP, Mola G, Bolgna J, Homer CSE.

Sex Reprod Health Matters. 2019 Dec;27(1):1686199. doi: 10.1080/26410397.2019.1686199.


In vivo structure of the Legionella type II secretion system by electron cryotomography.

Ghosal D, Kim KW, Zheng H, Kaplan M, Truchan HK, Lopez AE, McIntire IE, Vogel JP, Cianciotto NP, Jensen GJ.

Nat Microbiol. 2019 Dec;4(12):2101-2108. doi: 10.1038/s41564-019-0603-6. Epub 2019 Nov 21. Erratum in: Nat Microbiol. 2020 Apr;5(4):651.


Deubiquitination of phosphoribosyl-ubiquitin conjugates by phosphodiesterase-domain-containing Legionella effectors.

Wan M, Sulpizio AG, Akturk A, Beck WHJ, Lanz M, Faça VM, Smolka MB, Vogel JP, Mao Y.

Proc Natl Acad Sci U S A. 2019 Nov 19;116(47):23518-23526. doi: 10.1073/pnas.1916287116. Epub 2019 Nov 5.


Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil.

Brisson VL, Schmidt JE, Northen TR, Vogel JP, Gaudin ACM.

Sci Rep. 2019 Oct 30;9(1):15611. doi: 10.1038/s41598-019-52148-y.


Mode of delivery and pregnancy outcomes in preterm birth: a secondary analysis of the WHO Global and Multi-country Surveys.

Thanh BYL, Lumbiganon P, Pattanittum P, Laopaiboon M, Vogel JP, Oladapo OT, Pileggi-Castro C, Mori R, Jayaratne K, Qureshi Z, Souza J.

Sci Rep. 2019 Oct 29;9(1):15556. doi: 10.1038/s41598-019-52015-w.


How women are treated during facility-based childbirth in four countries: a cross-sectional study with labour observations and community-based surveys.

Bohren MA, Mehrtash H, Fawole B, Maung TM, Balde MD, Maya E, Thwin SS, Aderoba AK, Vogel JP, Irinyenikan TA, Adeyanju AO, Mon NO, Adu-Bonsaffoh K, Landoulsi S, Guure C, Adanu R, Diallo BA, Gülmezoglu AM, Soumah AM, Sall AO, Tunçalp Ö.

Lancet. 2019 Nov 9;394(10210):1750-1763. doi: 10.1016/S0140-6736(19)31992-0. Epub 2019 Oct 8.


Developing and applying a 'living guidelines' approach to WHO recommendations on maternal and perinatal health.

Vogel JP, Dowswell T, Lewin S, Bonet M, Hampson L, Kellie F, Portela A, Bucagu M, Norris SL, Neilson J, Gülmezoglu AM, Oladapo OT.

BMJ Glob Health. 2019 Aug 19;4(4):e001683. doi: 10.1136/bmjgh-2019-001683. eCollection 2019. Review.


Mode of delivery among nulliparous women with single, cephalic, term pregnancies: The WHO global survey on maternal and perinatal health, 2004-2008.

Harrison MS, Betrán AP, Vogel JP, Goldenberg RL, Gülmezoglu AM.

Int J Gynaecol Obstet. 2019 Nov;147(2):165-172. doi: 10.1002/ijgo.12929. Epub 2019 Aug 29.


PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution.

Gordon SP, Levy JJ, Vogel JP.

BMC Genomics. 2019 Jul 12;20(1):580. doi: 10.1186/s12864-019-5828-5.


Pregnancy outcomes of women with previous caesarean sections: Secondary analysis of World Health Organization Multicountry Survey on Maternal and Newborn Health.

Kietpeerakool C, Lumbiganon P, Laopaiboon M, Rattanakanokchai S, Vogel JP, Gülmezoglu AM.

Sci Rep. 2019 Jul 5;9(1):9748. doi: 10.1038/s41598-019-46153-4.


Gender balance in WHO panels for guidelines published from 2008 to 2018.

Bohren MA, Javadi D, Vogel JP.

Bull World Health Organ. 2019 Jul 1;97(7):477-485. doi: 10.2471/BLT.18.226894. Epub 2019 May 28. Erratum in: Bull World Health Organ. 2019 Aug 1;97(8):580.


WHO recommendations on uterotonics for postpartum haemorrhage prevention: what works, and which one?

Vogel JP, Williams M, Gallos I, Althabe F, Oladapo OT.

BMJ Glob Health. 2019 Apr 11;4(2):e001466. doi: 10.1136/bmjgh-2019-001466. eCollection 2019. No abstract available.


An outcome-based definition of low birthweight for births in low- and middle-income countries: a secondary analysis of the WHO global survey on maternal and perinatal health.

Laopaiboon M, Lumbiganon P, Rattanakanokchai S, Chaiwong W, Souza JP, Vogel JP, Mori R, Gülmezoglu AM.

BMC Pediatr. 2019 May 27;19(1):166. doi: 10.1186/s12887-019-1546-z.


The burden of severe maternal outcomes and indicators of quality of maternal care in Nigerian hospitals: a secondary analysis comparing two large facility-based surveys.

Vogel JP, Fawole B, Adeniran AS, Adegbola O, Oladapo OT.

BJOG. 2019 Jun;126 Suppl 3:49-57. doi: 10.1111/1471-0528.15698. Epub 2019 May 14.


What matters to women and healthcare providers in relation to interventions for the prevention of postpartum haemorrhage: A qualitative systematic review.

Finlayson K, Downe S, Vogel JP, Oladapo OT.

PLoS One. 2019 May 8;14(5):e0215919. doi: 10.1371/journal.pone.0215919. eCollection 2019.


A systematic review of the cost-effectiveness of uterotonic agents for the prevention of postpartum hemorrhage.

Lawrie TA, Rogozińska E, Sobiesuo P, Vogel JP, Ternent L, Oladapo OT.

Int J Gynaecol Obstet. 2019 Jul;146(1):56-64. doi: 10.1002/ijgo.12836. Epub 2019 May 20.


Molecular architecture, polar targeting and biogenesis of the Legionella Dot/Icm T4SS.

Ghosal D, Jeong KC, Chang YW, Gyore J, Teng L, Gardner A, Vogel JP, Jensen GJ.

Nat Microbiol. 2019 Jul;4(7):1173-1182. doi: 10.1038/s41564-019-0427-4. Epub 2019 Apr 22.


A New Method to Correct for Habitat Filtering in Microbial Correlation Networks.

Brisson V, Schmidt J, Northen TR, Vogel JP, Gaudin A.

Front Microbiol. 2019 Mar 20;10:585. doi: 10.3389/fmicb.2019.00585. eCollection 2019.


Analgesia during Labor and Vaginal Birth among Women with Severe Maternal Morbidity: Secondary Analysis from the WHO Multicountry Survey on Maternal and Newborn Health.

Souza MA, Guida JPS, Cecatti JG, Souza JP, Gulmezoglu AM, Betran AP, Torloni MR, Vogel JP, Costa ML.

Biomed Res Int. 2019 Feb 13;2019:7596165. doi: 10.1155/2019/7596165. eCollection 2019.


Reducing the global burden of disease in childhood - Authors' reply.

Vogel JP, Chawanpaiboon S, Gülmezoglu AM; study authors.

Lancet Glob Health. 2019 Apr;7(4):e416. doi: 10.1016/S2214-109X(19)30061-0. No abstract available.


Primary and secondary prevention of preterm birth: a review of systematic reviews and ongoing randomized controlled trials.

Matei A, Saccone G, Vogel JP, Armson AB.

Eur J Obstet Gynecol Reprod Biol. 2019 May;236:224-239. doi: 10.1016/j.ejogrb.2018.12.022. Epub 2019 Jan 25. Review.


Metabotyping as a Stopover in Genome-to-Phenome Mapping.

Handakumbura PP, Stanfill B, Rivas-Ubach A, Fortin D, Vogel JP, Jansson C.

Sci Rep. 2019 Feb 12;9(1):1858. doi: 10.1038/s41598-019-38483-0.


Research prioritization of interventions for the primary prevention of preterm birth: An international survey.

Allotey J, Matei A, Husain S, Newton S, Dodds J, Armson AB, Khan KS, Vogel JP.

Eur J Obstet Gynecol Reprod Biol. 2019 May;236:240-248. doi: 10.1016/j.ejogrb.2019.01.021. Epub 2019 Jan 25.


Uterotonic agents for preventing postpartum haemorrhage: a network meta-analysis.

Gallos ID, Papadopoulou A, Man R, Athanasopoulos N, Tobias A, Price MJ, Williams MJ, Diaz V, Pasquale J, Chamillard M, Widmer M, Tunçalp Ö, Hofmeyr GJ, Althabe F, Gülmezoglu AM, Vogel JP, Oladapo OT, Coomarasamy A.

Cochrane Database Syst Rev. 2018 Dec 19;12:CD011689. doi: 10.1002/14651858.CD011689.pub3.


Interventions during pregnancy to prevent preterm birth: an overview of Cochrane systematic reviews.

Medley N, Vogel JP, Care A, Alfirevic Z.

Cochrane Database Syst Rev. 2018 Nov 14;11:CD012505. doi: 10.1002/14651858.CD012505.pub2.


Perinatal outcomes in twin pregnancies complicated by maternal morbidity: evidence from the WHO Multicountry Survey on Maternal and Newborn Health.

Santana DS, Silveira C, Costa ML, Souza RT, Surita FG, Souza JP, Mazhar SB, Jayaratne K, Qureshi Z, Sousa MH, Vogel JP, Cecatti JG; WHO Multi-Country Survey on Maternal and Newborn Health Research Network.

BMC Pregnancy Childbirth. 2018 Nov 20;18(1):449. doi: 10.1186/s12884-018-2082-9.


Global Diversity of the Brachypodium Species Complex as a Resource for Genome-Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate.

Wilson PB, Streich JC, Murray KD, Eichten SR, Cheng R, Aitken NC, Spokas K, Warthmann N, Gordon SP; Accession Contributors, Vogel JP, Borevitz JO.

Genetics. 2019 Jan;211(1):317-331. doi: 10.1534/genetics.118.301589. Epub 2018 Nov 16.


Methodological development of tools to measure how women are treated during facility-based childbirth in four countries: labor observation and community survey.

Bohren MA, Vogel JP, Fawole B, Maya ET, Maung TM, Baldé MD, Oyeniran AA, Ogunlade M, Adu-Bonsaffoh K, Mon NO, Diallo BA, Bangoura A, Adanu R, Landoulsi S, Gülmezoglu AM, Tunçalp Ö.

BMC Med Res Methodol. 2018 Nov 15;18(1):132. doi: 10.1186/s12874-018-0603-x.


Global, regional, and national estimates of levels of preterm birth in 2014: a systematic review and modelling analysis.

Chawanpaiboon S, Vogel JP, Moller AB, Lumbiganon P, Petzold M, Hogan D, Landoulsi S, Jampathong N, Kongwattanakul K, Laopaiboon M, Lewis C, Rattanakanokchai S, Teng DN, Thinkhamrop J, Watananirun K, Zhang J, Zhou W, Gülmezoglu AM.

Lancet Glob Health. 2019 Jan;7(1):e37-e46. doi: 10.1016/S2214-109X(18)30451-0. Epub 2018 Oct 30.


Association mapping by aerial drone reveals 213 genetic associations for Sorghum bicolor biomass traits under drought.

Spindel JE, Dahlberg J, Colgan M, Hollingsworth J, Sievert J, Staggenborg SH, Hutmacher R, Jansson C, Vogel JP.

BMC Genomics. 2018 Sep 17;19(1):679. doi: 10.1186/s12864-018-5055-5.


Severe anemia, sickle cell disease, and thalassemia as risk factors for hypertensive disorders in pregnancy in developing countries.

Chen C, Grewal J, Betran AP, Vogel JP, Souza JP, Zhang J.

Pregnancy Hypertens. 2018 Jul;13:141-147. doi: 10.1016/j.preghy.2018.06.001. Epub 2018 Jun 9.


Women's perspectives of mistreatment during childbirth at health facilities in Ghana: findings from a qualitative study.

Maya ET, Adu-Bonsaffoh K, Dako-Gyeke P, Badzi C, Vogel JP, Bohren MA, Adanu R.

Reprod Health Matters. 2018;26(53):70-87. doi: 10.1080/09688080.2018.1502020. Epub 2018 Aug 28.


SECONDARY WALL ASSOCIATED MYB1 is a positive regulator of secondary cell wall thickening in Brachypodium distachyon and is not found in the Brassicaceae.

Handakumbura PP, Brow K, Whitney IP, Zhao K, Sanguinet KA, Lee SJ, Olins J, Romero-Gamboa SP, Harrington MJ, Bascom CJ, MacKinnon KJ, Veling MT, Liu L, Lee JE, Vogel JP, O'Malley RC, Bezanilla M, Bartley LE, Hazen SP.

Plant J. 2018 Nov;96(3):532-545. doi: 10.1111/tpj.14047. Epub 2018 Sep 12.


Genome-wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon.

Bourgeois Y, Stritt C, Walser JC, Gordon SP, Vogel JP, Roulin AC.

Plant J. 2018 Oct;96(2):438-451. doi: 10.1111/tpj.14042. Epub 2018 Sep 1.


Does gentle assisted pushing or giving birth in the upright position reduce the duration of the second stage of labour? A three-arm, open-label, randomised controlled trial in South Africa.

Hofmeyr GJ, Vogel JP, Singata M, Habib NA, Landoulsi S, Gülmezoglu AM.

BMJ Glob Health. 2018 Jun 29;3(3):e000906. doi: 10.1136/bmjgh-2018-000906. eCollection 2018.


Acute tocolysis for uterine tachysystole or suspected fetal distress.

Leathersich SJ, Vogel JP, Tran TS, Hofmeyr GJ.

Cochrane Database Syst Rev. 2018 Jul 4;7:CD009770. doi: 10.1002/14651858.CD009770.pub2. Review.


Analysis of Brachypodium genomes with genome-wide optical maps.

Zhu T, Hu Z, Rodriguez JC, Deal KR, Dvorak J, Vogel JP, Liu Z, Luo MC.

Genome. 2018 Aug;61(8):559-565. doi: 10.1139/gen-2018-0013. Epub 2018 Jun 8.


The global epidemiology of preterm birth.

Vogel JP, Chawanpaiboon S, Moller AB, Watananirun K, Bonet M, Lumbiganon P.

Best Pract Res Clin Obstet Gynaecol. 2018 Oct;52:3-12. doi: 10.1016/j.bpobgyn.2018.04.003. Epub 2018 Apr 26. Review.


Ecosystem Fabrication (EcoFAB) Protocols for The Construction of Laboratory Ecosystems Designed to Study Plant-microbe Interactions.

Gao J, Sasse J, Lewald KM, Zhalnina K, Cornmesser LT, Duncombe TA, Yoshikuni Y, Vogel JP, Firestone MK, Northen TR.

J Vis Exp. 2018 Apr 10;(134). doi: 10.3791/57170.


Authors' reply re: Respectful care during childbirth in health facilities globally: a qualitative evidence synthesis.

Shakibazadeh E, Bohren MA, Vogel JP, Gülmezoglu AM.

BJOG. 2018 Jul;125(8):1039. doi: 10.1111/1471-0528.15166. Epub 2018 Mar 15. No abstract available.


Progression of the first stage of spontaneous labour: A prospective cohort study in two sub-Saharan African countries.

Oladapo OT, Souza JP, Fawole B, Mugerwa K, Perdoná G, Alves D, Souza H, Reis R, Oliveira-Ciabati L, Maiorano A, Akintan A, Alu FE, Oyeneyin L, Adebayo A, Byamugisha J, Nakalembe M, Idris HA, Okike O, Althabe F, Hundley V, Donnay F, Pattinson R, Sanghvi HC, Jardine JE, Tunçalp Ö, Vogel JP, Stanton ME, Bohren M, Zhang J, Lavender T, Liljestrand J, Ten Hoope-Bender P, Mathai M, Bahl R, Gülmezoglu AM.

PLoS Med. 2018 Jan 16;15(1):e1002492. doi: 10.1371/journal.pmed.1002492. eCollection 2018 Jan.


Salt tolerance of two perennial grass Brachypodium sylvaticum accessions.

Sade N, Del Mar Rubio Wilhelmi M, Ke X, Brotman Y, Wright M, Khan I, De Souza W, Bassil E, Tobias CM, Thilmony R, Vogel JP, Blumwald E.

Plant Mol Biol. 2018 Feb;96(3):305-314. doi: 10.1007/s11103-017-0696-3. Epub 2018 Jan 10.


Developing Evidence to Decision Frameworks and an Interactive Evidence to Decision Tool for Making and Using Decisions and Recommendations in Health Care.

Rosenbaum SE, Moberg J, Glenton C, Schünemann HJ, Lewin S, Akl E, Mustafa RA, Morelli A, Vogel JP, Alonso-Coello P, Rada G, Vásquez J, Parmelli E, Gülmezoglu AM, Flottorp SA, Oxman AD.

Glob Chall. 2018 Jan 10;2(9):1700081. doi: 10.1002/gch2.201700081. eCollection 2018 Sep.


Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.

Gordon SP, Contreras-Moreira B, Woods DP, Des Marais DL, Burgess D, Shu S, Stritt C, Roulin AC, Schackwitz W, Tyler L, Martin J, Lipzen A, Dochy N, Phillips J, Barry K, Geuten K, Budak H, Juenger TE, Amasino R, Caicedo AL, Goodstein D, Davidson P, Mur LAJ, Figueroa M, Freeling M, Catalan P, Vogel JP.

Nat Commun. 2017 Dec 19;8(1):2184. doi: 10.1038/s41467-017-02292-8.


Transcriptome analysis of Brachypodium during fungal pathogen infection reveals both shared and distinct defense responses with wheat.

Powell JJ, Carere J, Sablok G, Fitzgerald TL, Stiller J, Colgrave ML, Gardiner DM, Manners JM, Vogel JP, Henry RJ, Kazan K.

Sci Rep. 2017 Dec 8;7(1):17212. doi: 10.1038/s41598-017-17454-3.

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