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Items: 1 to 50 of 55

1.

Nonallelic homologous recombination events responsible for copy number variation within an RNA silencing locus.

Cho YB, Jones SI, Vodkin LO.

Plant Direct. 2019 Aug 27;3(8):e00162. doi: 10.1002/pld3.162. eCollection 2019 Aug.

2.

Host-derived gene silencing of parasite fitness genes improves resistance to soybean cyst nematodes in stable transgenic soybean.

Tian B, Li J, Vodkin LO, Todd TC, Finer JJ, Trick HN.

Theor Appl Genet. 2019 Sep;132(9):2651-2662. doi: 10.1007/s00122-019-03379-0. Epub 2019 Jun 22.

3.

Mutations in Argonaute5 Illuminate Epistatic Interactions of the K1 and I Loci Leading to Saddle Seed Color Patterns in Glycine max.

Cho YB, Jones SI, Vodkin LO.

Plant Cell. 2017 Apr;29(4):708-725. doi: 10.1105/tpc.17.00162. Epub 2017 Mar 28.

4.

Simple gene silencing using the trans-acting siRNA pathway.

Jacobs TB, Lawler NJ, LaFayette PR, Vodkin LO, Parrott WA.

Plant Biotechnol J. 2016 Jan;14(1):117-27. doi: 10.1111/pbi.12362. Epub 2015 Mar 27.

5.
6.

RNA-Seq profiling of a defective seed coat mutation in Glycine max reveals differential expression of proline-rich and other cell wall protein transcripts.

Kour A, Boone AM, Vodkin LO.

PLoS One. 2014 May 14;9(5):e96342. doi: 10.1371/journal.pone.0096342. eCollection 2014.

7.

Using RNA-Seq to profile soybean seed development from fertilization to maturity.

Jones SI, Vodkin LO.

PLoS One. 2013;8(3):e59270. doi: 10.1371/journal.pone.0059270. Epub 2013 Mar 15.

8.

Divergent patterns of endogenous small RNA populations from seed and vegetative tissues of Glycine max.

Zabala G, Campos E, Varala KK, Bloomfield S, Jones SI, Win H, Tuteja JH, Calla B, Clough SJ, Hudson M, Vodkin LO.

BMC Plant Biol. 2012 Oct 2;12:177. doi: 10.1186/1471-2229-12-177.

9.

The interaction of the novel 30C02 cyst nematode effector protein with a plant β-1,3-endoglucanase may suppress host defence to promote parasitism.

Hamamouch N, Li C, Hewezi T, Baum TJ, Mitchum MG, Hussey RS, Vodkin LO, Davis EL.

J Exp Bot. 2012 Jun;63(10):3683-95. doi: 10.1093/jxb/ers058. Epub 2012 Mar 21.

10.

Using photonic crystal enhanced fluorescence on quartz substrates to improve the sensitivity of DNA microarrays.

George S, Pokhriyal A, Jones SI, Lu M, Vodkin LO, Cunningham BT.

Conf Proc IEEE Eng Med Biol Soc. 2011;2011:26-9. doi: 10.1109/IEMBS.2011.6089888.

PMID:
22254242
11.

Label-free prehybridization DNA microarray imaging using photonic crystals for quantitative spot quality analysis.

George S, Block ID, Jones SI, Mathias PC, Chaudhery V, Vuttipittayamongkol P, Wu HY, Vodkin LO, Cunningham BT.

Anal Chem. 2010 Oct 15;82(20):8551-7. doi: 10.1021/ac101551c.

PMID:
20857905
12.

Improved sensitivity of DNA microarrays using photonic crystal enhanced fluorescence.

Mathias PC, Jones SI, Wu HY, Yang F, Ganesh N, Gonzalez DO, Bollero G, Vodkin LO, Cunningham BT.

Anal Chem. 2010 Aug 15;82(16):6854-61. doi: 10.1021/ac100841d.

13.

Flux of transcript patterns during soybean seed development.

Jones SI, Gonzalez DO, Vodkin LO.

BMC Genomics. 2010 Feb 24;11:136. doi: 10.1186/1471-2164-11-136.

14.

Optimizing the spatial resolution of photonic crystal label-free imaging.

Block ID, Mathias PC, Jones SI, Vodkin LO, Cunningham BT.

Appl Opt. 2009 Dec 1;48(34):6567-74. doi: 10.1364/AO.48.006567.

PMID:
19956311
15.

Endogenous, tissue-specific short interfering RNAs silence the chalcone synthase gene family in glycine max seed coats.

Tuteja JH, Zabala G, Varala K, Hudson M, Vodkin LO.

Plant Cell. 2009 Oct;21(10):3063-77. doi: 10.1105/tpc.109.069856. Epub 2009 Oct 9. Erratum in: Plant Cell. 2010 May;22(5):1647.

16.

A detection instrument for enhanced-fluorescence and label-free imaging on photonic crystal surfaces.

Block ID, Mathias PC, Ganesh N, Jones SI, Dorvel BR, Chaudhery V, Vodkin LO, Bashir R, Cunningham BT.

Opt Express. 2009 Jul 20;17(15):13222-35.

17.

Transcriptome response to glyphosate in sensitive and resistant soybean.

Zhu J, Patzoldt WL, Shealy RT, Vodkin LO, Clough SJ, Tranel PJ.

J Agric Food Chem. 2008 Aug 13;56(15):6355-63. doi: 10.1021/jf801254e. Epub 2008 Jul 18.

PMID:
18636734
18.

Soybean defense responses to the soybean aphid.

Li Y, Zou J, Li M, Bilgin DD, Vodkin LO, Hartman GL, Clough SJ.

New Phytol. 2008;179(1):185-95. doi: 10.1111/j.1469-8137.2008.02443.x. Epub 2008 Apr 14.

19.

Transcription profiling of soybean nodulation by Bradyrhizobium japonicum.

Brechenmacher L, Kim MY, Benitez M, Li M, Joshi T, Calla B, Lee MP, Libault M, Vodkin LO, Xu D, Lee SH, Clough SJ, Stacey G.

Mol Plant Microbe Interact. 2008 May;21(5):631-45. doi: 10.1094/MPMI-21-5-0631.

20.

Microarray analysis of iron deficiency chlorosis in near-isogenic soybean lines.

O'Rourke JA, Charlson DV, Gonzalez DO, Vodkin LO, Graham MA, Cianzio SR, Grusak MA, Shoemaker RC.

BMC Genomics. 2007 Dec 21;8:476.

22.

Transcriptome changes in the phenylpropanoid pathway of Glycine max in response to Pseudomonas syringae infection.

Zabala G, Zou J, Tuteja J, Gonzalez DO, Clough SJ, Vodkin LO.

BMC Plant Biol. 2006 Nov 3;6:26.

23.

The effects of elevated CO2 concentration on soybean gene expression. An analysis of growing and mature leaves.

Ainsworth EA, Rogers A, Vodkin LO, Walter A, Schurr U.

Plant Physiol. 2006 Sep;142(1):135-47. Epub 2006 Jul 28.

24.

Expression profiling soybean response to Pseudomonas syringae reveals new defense-related genes and rapid HR-specific downregulation of photosynthesis.

Zou J, Rodriguez-Zas S, Aldea M, Li M, Zhu J, Gonzalez DO, Vodkin LO, DeLucia E, Clough SJ.

Mol Plant Microbe Interact. 2005 Nov;18(11):1161-74.

25.

The wp mutation of Glycine max carries a gene-fragment-rich transposon of the CACTA superfamily.

Zabala G, Vodkin LO.

Plant Cell. 2005 Oct;17(10):2619-32. Epub 2005 Sep 2.

26.

Features of a 103-kb gene-rich region in soybean include an inverted perfect repeat cluster of CHS genes comprising the I locus.

Clough SJ, Tuteja JH, Li M, Marek LF, Shoemaker RC, Vodkin LO.

Genome. 2004 Oct;47(5):819-31.

PMID:
15499396
27.

Microarrays for global expression constructed with a low redundancy set of 27,500 sequenced cDNAs representing an array of developmental stages and physiological conditions of the soybean plant.

Vodkin LO, Khanna A, Shealy R, Clough SJ, Gonzalez DO, Philip R, Zabala G, Thibaud-Nissen F, Sidarous M, Strömvik MV, Shoop E, Schmidt C, Retzel E, Erpelding J, Shoemaker RC, Rodriguez-Huete AM, Polacco JC, Coryell V, Keim P, Gong G, Liu L, Pardinas J, Schweitzer P.

BMC Genomics. 2004 Sep 29;5:73.

28.
29.

Clustering of microarray data reveals transcript patterns associated with somatic embryogenesis in soybean.

Thibaud-Nissen F, Shealy RT, Khanna A, Vodkin LO.

Plant Physiol. 2003 May;132(1):118-36.

30.
31.

A Putative Defective Interfering RNA from Bean pod mottle virus.

Sundararaman VP, Strömvik MV, Vodkin LO.

Plant Dis. 2000 Dec;84(12):1309-1313. doi: 10.1094/PDIS.2000.84.12.1309.

PMID:
30831873
32.

A novel promoter from soybean that is active in a complex developmental pattern with and without its proximal 650 base pairs.

Strömvik MV, Sundararaman VP, Vodkin LO.

Plant Mol Biol. 1999 Sep;41(2):217-31.

PMID:
10579489
33.
34.

Construction of a device composed of common plumbing supplies for freezing microscopy samples.

Darnowski DW, Vodkin LO.

Biotechniques. 1998 Mar;24(3):412-4, 416. No abstract available.

36.

Genetic length polymorphisms create size variation in proline-rich proteins of the cell wall.

Schmidt JS, Lindstrom JT, Vodkin LO.

Plant J. 1994 Aug;6(2):177-86.

37.
38.
39.

Variation of proline rich cell wall proteins in soybean lines with anthocyanin mutations.

Nicholas CD, Lindstrom JT, Vodkin LO.

Plant Mol Biol. 1993 Jan;21(1):145-56.

PMID:
8425044
40.

Fluorescent in situ hybridization to soybean metaphase chromosomes.

Griffor MC, Vodkin LO, Singh RJ, Hymowitz T.

Plant Mol Biol. 1991 Jul;17(1):101-9.

PMID:
1868210
41.

A soybean cell wall protein is affected by seed color genotype.

Lindstrom JT, Vodkin LO.

Plant Cell. 1991 Jun;3(6):561-71.

42.
43.

Expression of soybean lectin gene deletions in tobacco.

Lindstrom JT, Vodkin LO, Harding RW, Goeken RM.

Dev Genet. 1990;11(2):160-7.

PMID:
2379327
44.

A conserved zinc finger domain in higher plants.

Vodkin MH, Vodkin LO.

Plant Mol Biol. 1989 May;12(5):593-4. doi: 10.1007/BF00036972. No abstract available.

PMID:
24271074
45.

Unstable expression of a soybean gene during seed coat development.

Chandlee JM, Vodkin LO.

Theor Appl Genet. 1989 Apr;77(4):587-94. doi: 10.1007/BF00274285.

PMID:
24232729
46.

Organization of the Tgm family of transposable elements in soybean.

Rhodes PR, Vodkin LO.

Genetics. 1988 Oct;120(2):597-604.

47.
48.
49.

cA lectin gene insertion has the structural features of a transposable element.

Vodkin LO, Rhodes PR, Goldberg RB.

Cell. 1983 Oct;34(3):1023-31.

PMID:
6313203
50.

An insertion sequence blocks the expression of a soybean lectin gene.

Goldberg RB, Hoschek G, Vodkin LO.

Cell. 1983 Jun;33(2):465-75.

PMID:
6190570

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