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First Genome Sequence of Brucella abortus Biovar 3 Strain BAU21/S4023, Isolated from a Dairy Cow in Bangladesh.

Islam MS, El Zowalaty ME, van Vliet AHM, Thakur S, Khatun MM, Saha S, Rahman MT, Noreddin A, Islam MA.

Microbiol Resour Announc. 2019 Jun 13;8(24). pii: e00446-19. doi: 10.1128/MRA.00446-19.


Characterization of a colistin-resistant Avian Pathogenic Escherichia coli ST69 isolate recovered from a broiler chicken in Germany.

Hornsey M, Betts JW, Mehat JW, Wareham DW, van Vliet AHM, Woodward MJ, La Ragione RM.

J Med Microbiol. 2019 Jan;68(1):111-114. doi: 10.1099/jmm.0.000882. Epub 2018 Nov 26.


CapC, a Novel Autotransporter and Virulence Factor of Campylobacter jejuni.

Mehat JW, Park SF, van Vliet AHM, La Ragione RM.

Appl Environ Microbiol. 2018 Aug 1;84(16). pii: e01032-18. doi: 10.1128/AEM.01032-18. Print 2018 Aug 15.


Investigating the Association Between the Caecal Microbiomes of Broilers and Campylobacter Burden.

Sakaridis I, Ellis RJ, Cawthraw SA, van Vliet AHM, Stekel DJ, Penell J, Chambers M, La Ragione RM, Cook AJ.

Front Microbiol. 2018 May 22;9:927. doi: 10.3389/fmicb.2018.00927. eCollection 2018.


CT-guided nephrostomy: Re-inventing the wheel for the occasional interventionalist.

Smith PE, Luong ITH, van der Vliet AH.

J Med Imaging Radiat Oncol. 2018 Mar 12. doi: 10.1111/1754-9485.12720. [Epub ahead of print]


Persistent Listeria monocytogenes strains isolated from mussel production facilities form more biofilm but are not linked to specific genetic markers.

Nowak J, Cruz CD, Tempelaars M, Abee T, van Vliet AHM, Fletcher GC, Hedderley D, Palmer J, Flint S.

Int J Food Microbiol. 2017 Sep 1;256:45-53. doi: 10.1016/j.ijfoodmicro.2017.05.024. Epub 2017 Jun 1.


Fallacy of the Unique Genome: Sequence Diversity within Single Helicobacter pylori Strains.

Draper JL, Hansen LM, Bernick DL, Abedrabbo S, Underwood JG, Kong N, Huang BC, Weis AM, Weimer BC, van Vliet AH, Pourmand N, Solnick JV, Karplus K, Ottemann KM.

MBio. 2017 Feb 21;8(1). pii: e02321-16. doi: 10.1128/mBio.02321-16.


The Campylobacter jejuni Oxidative Stress Regulator RrpB Is Associated with a Genomic Hypervariable Region and Altered Oxidative Stress Resistance.

Gundogdu O, da Silva DT, Mohammad B, Elmi A, Wren BW, van Vliet AH, Dorrell N.

Front Microbiol. 2016 Dec 26;7:2117. doi: 10.3389/fmicb.2016.02117. eCollection 2016.


Impact of Clostridium botulinum genomic diversity on food safety.

Peck MW, van Vliet AH.

Curr Opin Food Sci. 2016 Aug;10:52-59. doi: 10.1016/j.cofs.2016.09.006. Review.


Use of pan-genome analysis for the identification of lineage-specific genes of Helicobacter pylori.

van Vliet AH.

FEMS Microbiol Lett. 2017 Jan;364(2). pii: fnw296. doi: 10.1093/femsle/fnw296. Epub 2016 Dec 22.


Diversity of the Germination Apparatus in Clostridium botulinum Groups I, II, III, and IV.

Brunt J, van Vliet AH, van den Bos F, Carter AT, Peck MW.

Front Microbiol. 2016 Oct 28;7:1702. eCollection 2016.


L-fucose influences chemotaxis and biofilm formation in Campylobacter jejuni.

Dwivedi R, Nothaft H, Garber J, Xin Kin L, Stahl M, Flint A, van Vliet AH, Stintzi A, Szymanski CM.

Mol Microbiol. 2016 Aug;101(4):575-89. doi: 10.1111/mmi.13409. Epub 2016 Jun 10.


Conservation of σ28-Dependent Non-Coding RNA Paralogs and Predicted σ54-Dependent Targets in Thermophilic Campylobacter Species.

Le MT, van Veldhuizen M, Porcelli I, Bongaerts RJ, Gaskin DJ, Pearson BM, van Vliet AH.

PLoS One. 2015 Oct 29;10(10):e0141627. doi: 10.1371/journal.pone.0141627. eCollection 2015.


A PAS domain-containing regulator controls flagella-flagella interactions in Campylobacter jejuni.

Reuter M, Periago PM, Mulholland F, Brown HL, van Vliet AH.

Front Microbiol. 2015 Jul 30;6:770. doi: 10.3389/fmicb.2015.00770. eCollection 2015.


Campylobacter jejuni biofilms contain extracellular DNA and are sensitive to DNase I treatment.

Brown HL, Hanman K, Reuter M, Betts RP, van Vliet AH.

Front Microbiol. 2015 Jul 10;6:699. doi: 10.3389/fmicb.2015.00699. eCollection 2015.


Refined analysis of the Campylobacter jejuni iron-dependent/independent Fur- and PerR-transcriptomes.

Butcher J, Handley RA, van Vliet AH, Stintzi A.

BMC Genomics. 2015 Jul 4;16:498. doi: 10.1186/s12864-015-1661-7.


Use of Alignment-Free Phylogenetics for Rapid Genome Sequence-Based Typing of Helicobacter pylori Virulence Markers and Antibiotic Susceptibility.

van Vliet AH, Kusters JG.

J Clin Microbiol. 2015 Sep;53(9):2877-88. doi: 10.1128/JCM.01357-15. Epub 2015 Jul 1.


PerR controls oxidative stress defence and aerotolerance but not motility-associated phenotypes of Campylobacter jejuni.

Handley RA, Mulholland F, Reuter M, Ramachandran VK, Musk H, Clissold L, Le Brun NE, van Vliet AH.

Microbiology. 2015 Jul;161(7):1524-36. doi: 10.1099/mic.0.000109. Epub 2015 May 12.


Prevention of biofilm formation and removal of existing biofilms by extracellular DNases of Campylobacter jejuni.

Brown HL, Reuter M, Hanman K, Betts RP, van Vliet AH.

PLoS One. 2015 Mar 24;10(3):e0121680. doi: 10.1371/journal.pone.0121680. eCollection 2015.


Chicken juice enhances surface attachment and biofilm formation of Campylobacter jejuni.

Brown HL, Reuter M, Salt LJ, Cross KL, Betts RP, van Vliet AH.

Appl Environ Microbiol. 2014 Nov;80(22):7053-60. doi: 10.1128/AEM.02614-14. Epub 2014 Sep 5.


Complete Genome Sequence of the Campylobacter coli Clinical Isolate 15-537360.

Pearson BM, Rokney A, Crossman LC, Miller WG, Wain J, van Vliet AH.

Genome Announc. 2013 Dec 12;1(6). pii: e01056-13. doi: 10.1128/genomeA.01056-13.


Parallel evolution of genome structure and transcriptional landscape in the Epsilonproteobacteria.

Porcelli I, Reuter M, Pearson BM, Wilhelm T, van Vliet AH.

BMC Genomics. 2013 Sep 12;14:616. doi: 10.1186/1471-2164-14-616.


Tetrazolium reduction allows assessment of biofilm formation by Campylobacter jejuni in a food matrix model.

Brown HL, van Vliet AH, Betts RP, Reuter M.

J Appl Microbiol. 2013 Nov;115(5):1212-21. doi: 10.1111/jam.12316. Epub 2013 Aug 20.


Signal balancing by the CetABC and CetZ chemoreceptors controls energy taxis in Campylobacter jejuni.

Reuter M, van Vliet AH.

PLoS One. 2013;8(1):e54390. doi: 10.1371/journal.pone.0054390. Epub 2013 Jan 29.


A novel link between Campylobacter jejuni bacteriophage defence, virulence and Guillain-Barré syndrome.

Louwen R, Horst-Kreft D, de Boer AG, van der Graaf L, de Knegt G, Hamersma M, Heikema AP, Timms AR, Jacobs BC, Wagenaar JA, Endtz HP, van der Oost J, Wells JM, Nieuwenhuis EE, van Vliet AH, Willemsen PT, van Baarlen P, van Belkum A.

Eur J Clin Microbiol Infect Dis. 2013 Feb;32(2):207-26. doi: 10.1007/s10096-012-1733-4. Epub 2012 Sep 4.


Selenium-dependent biogenesis of formate dehydrogenase in Campylobacter jejuni is controlled by the fdhTU accessory genes.

Shaw FL, Mulholland F, Le Gall G, Porcelli I, Hart DJ, Pearson BM, van Vliet AH.

J Bacteriol. 2012 Aug;194(15):3814-23. doi: 10.1128/JB.06586-11. Epub 2012 May 18.


Campylobacter bacteremia: a rare and under-reported event?

Louwen R, van Baarlen P, van Vliet AH, van Belkum A, Hays JP, Endtz HP.

Eur J Microbiol Immunol (Bp). 2012 Mar;2(1):76-87. doi: 10.1556/EuJMI.2.2012.1.11. Epub 2012 Mar 17. Review.


Acid-shock of Campylobacter jejuni induces flagellar gene expression and host cell invasion.

Le MT, Porcelli I, Weight CM, Gaskin DJ, Carding SR, van Vliet AH.

Eur J Microbiol Immunol (Bp). 2012 Mar;2(1):12-9. doi: 10.1556/EuJMI.2.2012.1.3. Epub 2012 Mar 17.


In vivo and in silico determination of essential genes of Campylobacter jejuni.

Metris A, Reuter M, Gaskin DJ, Baranyi J, van Vliet AH.

BMC Genomics. 2011 Nov 1;12:535. doi: 10.1186/1471-2164-12-535.


PerR controls peroxide- and iron-responsive expression of oxidative stress defense genes in Helicobacter hepaticus.

Belzer C, van Schendel BA, Hoogenboezem T, Kusters JG, Hermans PW, van Vliet AH, Kuipers EJ.

Eur J Microbiol Immunol (Bp). 2011 Sep;1(3):215-22. doi: 10.1556/EuJMI.1.2011.3.5. Epub 2011 Sep 9.


Gene Regulation.

de Vries N, van Vliet AHM, Kusters JG.

In: Mobley HLT, Mendz GL, Hazell SL, editors. Helicobacter pylori: Physiology and Genetics. Washington (DC): ASM Press; 2001. Chapter 29.


Ion Metabolism and Transport.

van Vliet AHM, Bereswill S, Kusters JG.

In: Mobley HLT, Mendz GL, Hazell SL, editors. Helicobacter pylori: Physiology and Genetics. Washington (DC): ASM Press; 2001. Chapter 17.


Random mutagenesis strategies for Campylobacter and Helicobacter species.

Gaskin DJ, van Vliet AH.

Methods Mol Biol. 2010;634:37-52. doi: 10.1007/978-1-60761-652-8_3.


Two respiratory enzyme systems in Campylobacter jejuni NCTC 11168 contribute to growth on L-lactate.

Thomas MT, Shepherd M, Poole RK, van Vliet AHM, Kelly DJ, Pearson BM.

Environ Microbiol. 2011 Jan;13(1):48-61. doi: 10.1111/j.1462-2920.2010.02307.x.


An ABC transporter and a TonB ortholog contribute to Helicobacter mustelae nickel and cobalt acquisition.

Stoof J, Kuipers EJ, Klaver G, van Vliet AH.

Infect Immun. 2010 Oct;78(10):4261-7. doi: 10.1128/IAI.00365-10. Epub 2010 Jul 19.


Biofilm formation by Campylobacter jejuni is increased under aerobic conditions.

Reuter M, Mallett A, Pearson BM, van Vliet AH.

Appl Environ Microbiol. 2010 Apr;76(7):2122-8. doi: 10.1128/AEM.01878-09. Epub 2010 Feb 5.


Reduction of fumarate, mesaconate and crotonate by Mfr, a novel oxygen-regulated periplasmic reductase in Campylobacter jejuni.

Guccione E, Hitchcock A, Hall SJ, Mulholland F, Shearer N, van Vliet AH, Kelly DJ.

Environ Microbiol. 2010 Mar;12(3):576-91. doi: 10.1111/j.1462-2920.2009.02096.x. Epub 2009 Nov 17.


Characterization of NikR-responsive promoters of urease and metal transport genes of Helicobacter mustelae.

Stoof J, Kuipers EJ, van Vliet AH.

Biometals. 2010 Feb;23(1):145-59. doi: 10.1007/s10534-009-9275-7. Epub 2009 Nov 6.


Next generation sequencing of microbial transcriptomes: challenges and opportunities.

van Vliet AH.

FEMS Microbiol Lett. 2010 Jan;302(1):1-7. doi: 10.1111/j.1574-6968.2009.01767.x. Epub 2009 Aug 21. Review.


Genomics of thermophilic campylobacter species.

Gaskin DJ, Reuter M, Shearer N, Mulholland F, Pearson BM, van Vliet AH.

Genome Dyn. 2009;6:91-109. doi: 10.1159/000235765. Epub 2009 Aug 19.


New levels of sophistication in the transcriptional landscape of bacteria.

van Vliet AH, Wren BW.

Genome Biol. 2009;10(8):233. doi: 10.1186/gb-2009-10-8-233. Epub 2009 Aug 3. Review.


The Helicobacter hepaticus hefA gene is involved in resistance to amoxicillin.

Belzer C, Stoof J, Breijer S, Kusters JG, Kuipers EJ, van Vliet AH.

Helicobacter. 2009 Feb;14(1):72-9. doi: 10.1111/j.1523-5378.2009.00661.x.


Inverse nickel-responsive regulation of two urease enzymes in the gastric pathogen Helicobacter mustelae.

Stoof J, Breijer S, Pot RG, van der Neut D, Kuipers EJ, Kusters JG, van Vliet AH.

Environ Microbiol. 2008 Oct;10(10):2586-97. doi: 10.1111/j.1462-2920.2008.01681.x. Epub 2008 Jun 28.


A pro-inflammatory genotype predisposes to Barrett's esophagus.

Moons LM, Kusters JG, van Delft JH, Kuipers EJ, Gottschalk R, Geldof H, Bode WA, Stoof J, van Vliet AH, Ketelslegers HB, Kleinjans JC, Siersema PD.

Carcinogenesis. 2008 May;29(5):926-31. doi: 10.1093/carcin/bgm241. Epub 2008 Jan 12.


Riboflavin biosynthesis is associated with assimilatory ferric reduction and iron acquisition by Campylobacter jejuni.

Crossley RA, Gaskin DJ, Holmes K, Mulholland F, Wells JM, Kelly DJ, van Vliet AH, Walton NJ.

Appl Environ Microbiol. 2007 Dec;73(24):7819-25. Epub 2007 Oct 26.


The complete genome sequence of Campylobacter jejuni strain 81116 (NCTC11828).

Pearson BM, Gaskin DJ, Segers RP, Wells JM, Nuijten PJ, van Vliet AH.

J Bacteriol. 2007 Nov;189(22):8402-3. Epub 2007 Sep 14.


High-grade dysplasia in Barrett's esophagus is associated with increased expression of calgranulin A and B.

Bax DA, Siersema PD, Haringsma J, Kuipers EJ, Vos AJ, Van Dekken H, Van Vliet AH, Kusters JG.

Scand J Gastroenterol. 2007 Aug;42(8):902-10.


COX-2 CA-haplotype is a risk factor for the development of esophageal adenocarcinoma.

Moons LM, Kuipers EJ, Rygiel AM, Groothuismink AZ, Geldof H, Bode WA, Krishnadath KK, Bergman JJ, van Vliet AH, Siersema PD, Kusters JG.

Am J Gastroenterol. 2007 Nov;102(11):2373-9. Epub 2007 Jun 20.


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