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Items: 1 to 50 of 84

1.

Microenvironment‑driven resistance to B‑Raf inhibition in a melanoma patient is accompanied by broad changes of gene methylation and expression in distal fibroblasts.

Kodet O, Dvořánková B, Bendlová B, Sýkorová V, Krajsová I, Štork J, Kučera J, Szabo P, Strnad H, Kolář M, Vlček Č, Smetana K Jr, Lacina L.

Int J Mol Med. 2018 May;41(5):2687-2703. doi: 10.3892/ijmm.2018.3448. Epub 2018 Feb 1.

2.

FMNH2-dependent monooxygenases initiate catabolism of sulfonamides in Microbacterium sp. strain BR1 subsisting on sulfonamide antibiotics.

Ricken B, Kolvenbach BA, Bergesch C, Benndorf D, Kroll K, Strnad H, Vlček Č, Adaixo R, Hammes F, Shahgaldian P, Schäffer A, Kohler HE, Corvini PF.

Sci Rep. 2017 Nov 17;7(1):15783. doi: 10.1038/s41598-017-16132-8.

3.

Mitochondrial Genome of Prasinophyte Alga Pyramimonas parkeae.

Hrdá Š, Hroudová M, Vlček Č, Hampl V.

J Eukaryot Microbiol. 2017 May;64(3):360-369. doi: 10.1111/jeu.12371. Epub 2016 Oct 24.

PMID:
27678215
4.

[Fever in infants: investigating the source].

Vlcek C, Rack-Hoch A, von Both U, Jansson A.

MMW Fortschr Med. 2016 Sep;158(16):58-66. doi: 10.1007/s15006-016-8229-6. German. No abstract available.

PMID:
27646382
5.

Functional differences between neonatal and adult fibroblasts and keratinocytes: Donor age affects epithelial-mesenchymal crosstalk in vitro.

Mateu R, Živicová V, Krejčí ED, Grim M, Strnad H, Vlček Č, Kolář M, Lacina L, Gál P, Borský J, Smetana K Jr, Dvořánková B.

Int J Mol Med. 2016 Oct;38(4):1063-74. doi: 10.3892/ijmm.2016.2706. Epub 2016 Aug 11.

6.

A Eukaryote without a Mitochondrial Organelle.

Karnkowska A, Vacek V, Zubáčová Z, Treitli SC, Petrželková R, Eme L, Novák L, Žárský V, Barlow LD, Herman EK, Soukal P, Hroudová M, Doležal P, Stairs CW, Roger AJ, Eliáš M, Dacks JB, Vlček Č, Hampl V.

Curr Biol. 2016 May 23;26(10):1274-84. doi: 10.1016/j.cub.2016.03.053. Epub 2016 May 12.

7.

Genome of Leptomonas pyrrhocoris: a high-quality reference for monoxenous trypanosomatids and new insights into evolution of Leishmania.

Flegontov P, Butenko A, Firsov S, Kraeva N, Eliáš M, Field MC, Filatov D, Flegontova O, Gerasimov ES, Hlaváčová J, Ishemgulova A, Jackson AP, Kelly S, Kostygov AY, Logacheva MD, Maslov DA, Opperdoes FR, O'Reilly A, Sádlová J, Ševčíková T, Venkatesh D, Vlček Č, Volf P, Votýpka J, Záhonová K, Yurchenko V, Lukeš J.

Sci Rep. 2016 Mar 29;6:23704. doi: 10.1038/srep23704.

8.

A Comparative Analysis of Mitochondrial Genomes in Eustigmatophyte Algae.

Ševčíková T, Klimeš V, Zbránková V, Strnad H, Hroudová M, Vlček Č, Eliáš M.

Genome Biol Evol. 2016 Feb 12;8(3):705-22. doi: 10.1093/gbe/evw027.

9.

First multigene analysis of Archamoebae (Amoebozoa: Conosa) robustly reveals its phylogeny and shows that Entamoebidae represents a deep lineage of the group.

Pánek T, Zadrobílková E, Walker G, Brown MW, Gentekaki E, Hroudová M, Kang S, Roger AJ, Tice AK, Vlček Č, Čepička I.

Mol Phylogenet Evol. 2016 May;98:41-51. doi: 10.1016/j.ympev.2016.01.011. Epub 2016 Jan 28.

PMID:
26826602
10.

Combined Culture-Based and Culture-Independent Approaches Provide Insights into Diversity of Jakobids, an Extremely Plesiomorphic Eukaryotic Lineage.

Pánek T, Táborský P, Pachiadaki MG, Hroudová M, Vlček Č, Edgcomb VP, Čepička I.

Front Microbiol. 2015 Nov 18;6:1288. doi: 10.3389/fmicb.2015.01288. eCollection 2015.

11.

Corrigendum: Cubozoan genome illuminates functional diversification of opsins and photoreceptor evolution.

Liegertová M, Pergner J, Kozmiková I, Fabian P, Pombinho AR, Strnad H, Pačes J, Vlček Č, Bartůněk P, Kozmik Z.

Sci Rep. 2015 Sep 24;5:14396. doi: 10.1038/srep14396. No abstract available.

12.

Cubozoan genome illuminates functional diversification of opsins and photoreceptor evolution.

Liegertová M, Pergner J, Kozmiková I, Fabian P, Pombinho AR, Strnad H, Pačes J, Vlček Č, Bartůněk P, Kozmik Z.

Sci Rep. 2015 Jul 8;5:11885. doi: 10.1038/srep11885. Erratum in: Sci Rep. 2015;5:14396.

13.

Updating algal evolutionary relationships through plastid genome sequencing: did alveolate plastids emerge through endosymbiosis of an ochrophyte?

Ševčíková T, Horák A, Klimeš V, Zbránková V, Demir-Hilton E, Sudek S, Jenkins J, Schmutz J, Přibyl P, Fousek J, Vlček Č, Lang BF, Oborník M, Worden AZ, Eliáš M.

Sci Rep. 2015 May 28;5:10134. doi: 10.1038/srep10134.

14.

An ancestral bacterial division system is widespread in eukaryotic mitochondria.

Leger MM, Petrů M, Žárský V, Eme L, Vlček Č, Harding T, Lang BF, Eliáš M, Doležal P, Roger AJ.

Proc Natl Acad Sci U S A. 2015 Aug 18;112(33):10239-46. doi: 10.1073/pnas.1421392112. Epub 2015 Mar 23.

15.

Bacterial proteins pinpoint a single eukaryotic root.

Derelle R, Torruella G, Klimeš V, Brinkmann H, Kim E, Vlček Č, Lang BF, Eliáš M.

Proc Natl Acad Sci U S A. 2015 Feb 17;112(7):E693-9. doi: 10.1073/pnas.1420657112. Epub 2015 Feb 2.

16.

Melanoma cells influence the differentiation pattern of human epidermal keratinocytes.

Kodet O, Lacina L, Krejčí E, Dvořánková B, Grim M, Štork J, Kodetová D, Vlček Č, Šáchová J, Kolář M, Strnad H, Smetana K.

Mol Cancer. 2015 Jan 5;14:1. doi: 10.1186/1476-4598-14-1.

17.

Microarray analysis of serum mRNA in patients with head and neck squamous cell carcinoma at whole-genome scale.

Čapková M, Šáchová J, Strnad H, Kolář M, Hroudová M, Chovanec M, Čada Z, Šteffl M, Valach J, Kastner J, Vlček Č, Smetana K Jr, Plzák J.

Biomed Res Int. 2014;2014:408683. doi: 10.1155/2014/408683. Epub 2014 Apr 23.

18.

Genome Sequence of Rhodococcus erythropolis Strain CCM2595, a Phenol Derivative-Degrading Bacterium.

Strnad H, Patek M, Fousek J, Szokol J, Ulbrich P, Nesvera J, Paces V, Vlcek C.

Genome Announc. 2014 Mar 20;2(2). pii: e00208-14. doi: 10.1128/genomeA.00208-14.

19.

NIF-type iron-sulfur cluster assembly system is duplicated and distributed in the mitochondria and cytosol of Mastigamoeba balamuthi.

Nývltová E, Šuták R, Harant K, Šedinová M, Hrdy I, Paces J, Vlček Č, Tachezy J.

Proc Natl Acad Sci U S A. 2013 Apr 30;110(18):7371-6. doi: 10.1073/pnas.1219590110. Epub 2013 Apr 15.

20.

The mitochondrion-like organelle of Trimastix pyriformis contains the complete glycine cleavage system.

Zubáčová Z, Novák L, Bublíková J, Vacek V, Fousek J, Rídl J, Tachezy J, Doležal P, Vlček C, Hampl V.

PLoS One. 2013;8(3):e55417. doi: 10.1371/journal.pone.0055417. Epub 2013 Mar 13.

21.

A broad phylogenetic survey unveils the diversity and evolution of telomeres in eukaryotes.

Fulnecková J, Sevcíková T, Fajkus J, Lukesová A, Lukes M, Vlcek C, Lang BF, Kim E, Eliás M, Sykorová E.

Genome Biol Evol. 2013;5(3):468-83. doi: 10.1093/gbe/evt019.

22.

Plant secondary metabolite-induced shifts in bacterial community structure and degradative ability in contaminated soil.

Uhlik O, Musilova L, Ridl J, Hroudova M, Vlcek C, Koubek J, Holeckova M, Mackova M, Macek T.

Appl Microbiol Biotechnol. 2013 Oct;97(20):9245-56. doi: 10.1007/s00253-012-4627-6. Epub 2012 Dec 19.

PMID:
23250224
23.

Euglena gracilis and Trypanosomatids possess common patterns in predicted mitochondrial targeting presequences.

Krnáčová K, Vesteg M, Hampl V, Vlček Č, Horváth A.

J Mol Evol. 2012 Oct;75(3-4):119-29. doi: 10.1007/s00239-012-9523-2. Epub 2012 Oct 12.

PMID:
23064754
24.

Upregulation of IL-6, IL-8 and CXCL-1 production in dermal fibroblasts by normal/malignant epithelial cells in vitro: Immunohistochemical and transcriptomic analyses.

Kolář M, Szabo P, Dvořánková B, Lacina L, Gabius HJ, Strnad H, Sáchová J, Vlček C, Plzák J, Chovanec M, Cada Z, Betka J, Fík Z, Pačes J, Kovářová H, Motlík J, Jarkovská K, Smetana K Jr.

Biol Cell. 2012 Dec;104(12):738-51. doi: 10.1111/boc.201200018.

PMID:
23043537
25.

Intraspecific sequence comparisons reveal similar rates of non-collinear gene insertion in the B and D genomes of bread wheat.

Bartoš J, Vlček C, Choulet F, Džunková M, Cviková K, Safář J, Simková H, Pačes J, Strnad H, Sourdille P, Bergès H, Cattonaro F, Feuillet C, Doležel J.

BMC Plant Biol. 2012 Aug 30;12:155.

26.

Identification of bacteria utilizing biphenyl, benzoate, and naphthalene in long-term contaminated soil.

Uhlik O, Wald J, Strejcek M, Musilova L, Ridl J, Hroudova M, Vlcek C, Cardenas E, Mackova M, Macek T.

PLoS One. 2012;7(7):e40653. doi: 10.1371/journal.pone.0040653. Epub 2012 Jul 13.

27.

Diversity, phylogeny and expression patterns of Pou and Six homeodomain transcription factors in hydrozoan jellyfish Craspedacusta sowerbyi.

Hroudova M, Vojta P, Strnad H, Krejcik Z, Ridl J, Paces J, Vlcek C, Paces V.

PLoS One. 2012;7(4):e36420. doi: 10.1371/journal.pone.0036420. Epub 2012 Apr 30.

28.

The plastid genome of Eutreptiella provides a window into the process of secondary endosymbiosis of plastid in euglenids.

Hrdá Š, Fousek J, Szabová J, Hampl V, Vlček Č.

PLoS One. 2012;7(3):e33746. doi: 10.1371/journal.pone.0033746. Epub 2012 Mar 20. Erratum in: PLoS One. 2012;7(4): doi/10.1371/annotation/3f9f229e-e4e1-457b-b33d-89950e1799c5. Hampl, Vladimír 5th [corrected to Hampl, Vladimír]. PLoS One. 2012;7(6): doi/10.1371/annotation/c03a517b-fade-4f91-ae19-8ccb2eea697c.

29.

Smooth muscle actin-expressing stromal fibroblasts in head and neck squamous cell carcinoma: increased expression of galectin-1 and induction of poor prognosis factors.

Valach J, Fík Z, Strnad H, Chovanec M, Plzák J, Cada Z, Szabo P, Sáchová J, Hroudová M, Urbanová M, Steffl M, Pačes J, Mazánek J, Vlček C, Betka J, Kaltner H, André S, Gabius HJ, Kodet R, Smetana K Jr, Gál P, Kolář M.

Int J Cancer. 2012 Dec 1;131(11):2499-508. doi: 10.1002/ijc.27550. Epub 2012 Apr 9.

30.

Purification and characterization of hydroquinone dioxygenase from Sphingomonas sp. strain TTNP3.

Kolvenbach BA, Lenz M, Benndorf D, Rapp E, Fousek J, Vlcek C, Schäffer A, Gabriel FL, Kohler HP, Corvini PF.

AMB Express. 2011 May 27;1(1):8. doi: 10.1186/2191-0855-1-8.

31.

Matrix-assisted laser desorption ionization (MALDI)-time of flight mass spectrometry- and MALDI biotyper-based identification of cultured biphenyl-metabolizing bacteria from contaminated horseradish rhizosphere soil.

Uhlik O, Strejcek M, Junkova P, Sanda M, Hroudova M, Vlcek C, Mackova M, Macek T.

Appl Environ Microbiol. 2011 Oct;77(19):6858-66. doi: 10.1128/AEM.05465-11. Epub 2011 Aug 5.

32.

Active and total microbial communities in forest soil are largely different and highly stratified during decomposition.

Baldrian P, Kolařík M, Stursová M, Kopecký J, Valášková V, Větrovský T, Zifčáková L, Snajdr J, Rídl J, Vlček C, Voříšková J.

ISME J. 2012 Feb;6(2):248-58. doi: 10.1038/ismej.2011.95. Epub 2011 Jul 21.

33.

An unexpected gene cluster for downstream degradation of alkylphenols in Sphingomonas sp. strain TTNP3.

Kolvenbach BA, Dobrowinski H, Fousek J, Vlcek C, Schäffer A, Gabriel FL, Kohler HP, Corvini PF.

Appl Microbiol Biotechnol. 2012 Feb;93(3):1315-24. doi: 10.1007/s00253-011-3451-8. Epub 2011 Jul 14.

PMID:
21755281
34.

Metabolic characterization of volume overload heart failure due to aorto-caval fistula in rats.

Melenovsky V, Benes J, Skaroupkova P, Sedmera D, Strnad H, Kolar M, Vlcek C, Petrak J, Benes J Jr, Papousek F, Oliyarnyk O, Kazdova L, Cervenka L.

Mol Cell Biochem. 2011 Aug;354(1-2):83-96. doi: 10.1007/s11010-011-0808-3. Epub 2011 Apr 5.

PMID:
21465236
35.

Mouse 3T3 fibroblasts under the influence of fibroblasts isolated from stroma of human basal cell carcinoma acquire properties of multipotent stem cells.

Szabó P, Kolář M, Dvořánková B, Lacina L, Štork J, Vlček Č, Strnad H, Tvrdek M, Smetana K Jr.

Biol Cell. 2011 May;103(5):233-48. doi: 10.1042/BC20100113.

PMID:
21355851
36.

Conservation and diversification of an ancestral chordate gene regulatory network for dorsoventral patterning.

Kozmikova I, Smolikova J, Vlcek C, Kozmik Z.

PLoS One. 2011 Feb 3;6(2):e14650. doi: 10.1371/journal.pone.0014650.

37.

Complete genome sequence of the haloaromatic acid-degrading bacterium Achromobacter xylosoxidans A8.

Strnad H, Ridl J, Paces J, Kolar M, Vlcek C, Paces V.

J Bacteriol. 2011 Feb;193(3):791-2. doi: 10.1128/JB.01299-10. Epub 2010 Nov 19.

38.

Systematically fragmented genes in a multipartite mitochondrial genome.

Vlcek C, Marande W, Teijeiro S, Lukes J, Burger G.

Nucleic Acids Res. 2011 Feb;39(3):979-88. doi: 10.1093/nar/gkq883. Epub 2010 Oct 8.

39.

Molecular phylogeny of the genus Luzula DC. (Juncaceae, Monocotyledones) based on plastome and nuclear ribosomal regions: a case of incongruence, incomplete lineage sorting and hybridisation.

Záveská Drábková L, Vlček C.

Mol Phylogenet Evol. 2010 Nov;57(2):536-51. doi: 10.1016/j.ympev.2010.07.022. Epub 2010 Aug 7.

PMID:
20696260
40.

Complete genome sequence of the photosynthetic purple nonsulfur bacterium Rhodobacter capsulatus SB 1003.

Strnad H, Lapidus A, Paces J, Ulbrich P, Vlcek C, Paces V, Haselkorn R.

J Bacteriol. 2010 Jul;192(13):3545-6. doi: 10.1128/JB.00366-10. Epub 2010 Apr 23.

41.

Head and neck squamous cancer stromal fibroblasts produce growth factors influencing phenotype of normal human keratinocytes.

Strnad H, Lacina L, Kolár M, Cada Z, Vlcek C, Dvoránková B, Betka J, Plzák J, Chovanec M, Sáchová J, Valach J, Urbanová M, Smetana K Jr.

Histochem Cell Biol. 2010 Feb;133(2):201-11. doi: 10.1007/s00418-009-0661-6. Epub 2009 Nov 19.

PMID:
19924430
42.

Biphenyl-metabolizing bacteria in the rhizosphere of horseradish and bulk soil contaminated by polychlorinated biphenyls as revealed by stable isotope probing.

Uhlik O, Jecna K, Mackova M, Vlcek C, Hroudova M, Demnerova K, Paces V, Macek T.

Appl Environ Microbiol. 2009 Oct;75(20):6471-7. doi: 10.1128/AEM.00466-09. Epub 2009 Aug 21.

43.

A mouse speciation gene encodes a meiotic histone H3 methyltransferase.

Mihola O, Trachtulec Z, Vlcek C, Schimenti JC, Forejt J.

Science. 2009 Jan 16;323(5912):373-5. doi: 10.1126/science.1163601. Epub 2008 Dec 11.

44.

Assembly of the cnidarian camera-type eye from vertebrate-like components.

Kozmik Z, Ruzickova J, Jonasova K, Matsumoto Y, Vopalensky P, Kozmikova I, Strnad H, Kawamura S, Piatigorsky J, Paces V, Vlcek C.

Proc Natl Acad Sci U S A. 2008 Jul 1;105(26):8989-93. doi: 10.1073/pnas.0800388105. Epub 2008 Jun 24.

45.

Nucleotide sequence, organization and characterization of the (halo)aromatic acid catabolic plasmid pA81 from Achromobacter xylosoxidans A8.

Jencova V, Strnad H, Chodora Z, Ulbrich P, Vlcek C, Hickey WJ, Paces V.

Res Microbiol. 2008 Mar;159(2):118-27. doi: 10.1016/j.resmic.2007.11.018. Epub 2007 Dec 8.

PMID:
18249097
46.

Fine haplotype structure of a chromosome 17 region in the laboratory and wild mouse.

Trachtulec Z, Vlcek C, Mihola O, Gregorova S, Fotopulosova V, Forejt J.

Genetics. 2008 Mar;178(3):1777-84. doi: 10.1534/genetics.107.082404. Epub 2008 Feb 3.

47.

Cubozoan crystallins: evidence for convergent evolution of pax regulatory sequences.

Kozmik Z, Swamynathan SK, Ruzickova J, Jonasova K, Paces V, Vlcek C, Piatigorsky J.

Evol Dev. 2008 Jan-Feb;10(1):52-61. doi: 10.1111/j.1525-142X.2007.00213.x.

PMID:
18184357
48.

Complete genome sequence and analysis of the Streptomyces aureofaciens phage mu1/6.

Farkasovská J, Klucar L, Vlcek C, Kokavec J, Godány A.

Folia Microbiol (Praha). 2007;52(4):347-58.

PMID:
18062183
49.

Wnt-mediated down-regulation of Sp1 target genes by a transcriptional repressor Sp5.

Fujimura N, Vacik T, Machon O, Vlcek C, Scalabrin S, Speth M, Diep D, Krauss S, Kozmik Z.

J Biol Chem. 2007 Jan 12;282(2):1225-37. Epub 2006 Nov 6.

50.

Complete nucleotide sequence and genome analysis of bacteriophage BFK20--a lytic phage of the industrial producer Brevibacterium flavum.

Bukovska G, Klucar L, Vlcek C, Adamovic J, Turna J, Timko J.

Virology. 2006 Apr 25;348(1):57-71. Epub 2006 Feb 2.

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