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Items: 36

1.

Consistency between kinetics and thermodynamics: general scaling conditions for reaction rates of nonlinear chemical systems without constraints far from equilibrium.

Vlad MO, Popa VT, Ross J.

J Phys Chem A. 2011 Feb 3;115(4):507-13. doi: 10.1021/jp107020k. Epub 2010 Dec 23.

PMID:
21182240
2.

Thermodynamically based constraints for rate coefficients of large biochemical networks.

Vlad MO, Ross J.

Wiley Interdiscip Rev Syst Biol Med. 2009 Nov-Dec;1(3):348-358. doi: 10.1002/wsbm.50.

PMID:
20836002
3.

Kinetic laws, phase-phase expansions, renormalization group, and INR calibration.

Vlad MO, Corlan AD, Morán F, Spang R, Oefner P, Ross J.

Proc Natl Acad Sci U S A. 2009 Apr 21;106(16):6465-70. doi: 10.1073/pnas.0809855106. Epub 2009 Apr 6.

4.

Modeling the temporal interplay of molecular signaling and gene expression by using dynamic nested effects models.

Anchang B, Sadeh MJ, Jacob J, Tresch A, Vlad MO, Oefner PJ, Spang R.

Proc Natl Acad Sci U S A. 2009 Apr 21;106(16):6447-52. doi: 10.1073/pnas.0809822106. Epub 2009 Mar 27.

5.

Incremental parameter evaluation from incomplete data with application to the population pharmacology of anticoagulants.

Vlad MO, Corlan AD, Morán F, Oefner P, Ross J.

Proc Natl Acad Sci U S A. 2008 Mar 25;105(12):4627-32. doi: 10.1073/pnas.0711508105. Epub 2008 Mar 19.

6.

On anti-portfolio effects in science and technology with application to reaction kinetics, chemical synthesis, and molecular biology.

Vlad MO, Corlan AD, Popa VT, Ross J.

Proc Natl Acad Sci U S A. 2007 Nov 20;104(47):18398-403. Epub 2007 Nov 14.

7.

Functional, fractal nonlinear response with application to rate processes with memory, allometry, and population genetics.

Vlad MO, Morán F, Popa VT, Szedlacsek SE, Ross J.

Proc Natl Acad Sci U S A. 2007 Mar 20;104(12):4798-803. Epub 2007 Mar 14.

8.

Species connectivities and reaction mechanisms from neutral response experiments.

Morán F, Vlad MO, Bustos M, Triviño JC, Ross J.

J Phys Chem A. 2007 Mar 15;111(10):1844-51. Epub 2007 Feb 20. Review.

PMID:
17309244
9.
10.

Random activation energy model and disordered kinetics, from static to dynamic disorder.

Vlad MO, Cerofolini G, Oefner P, Ross J.

J Phys Chem B. 2005 Nov 17;109(45):21241-57.

PMID:
16853755
11.

Multiple rate-determining steps for nonideal and fractal kinetics.

Vlad MO, Popa VT, Segal E, Ross J.

J Phys Chem B. 2005 Feb 17;109(6):2455-60.

PMID:
16851241
12.

Exact solutions for the entropy production rate of several irreversible processes.

Ross J, Vlad MO.

J Phys Chem A. 2005 Nov 24;109(46):10607-12.

PMID:
16834317
13.

Fisher's theorems for multivariable, time- and space-dependent systems, with applications in population genetics and chemical kinetics.

Vlad MO, Szedlacsek SE, Pourmand N, Cavalli-Sforza LL, Oefner P, Ross J.

Proc Natl Acad Sci U S A. 2005 Jul 12;102(28):9848-53. Epub 2005 Jun 30.

14.

Bioluminescence regenerative cycle (BRC) system: theoretical considerations for nucleic acid quantification assays.

Hassibi A, Contag C, Vlad MO, Hafezi M, Lee TH, Davis RW, Pourmand N.

Biophys Chem. 2005 Aug 1;116(3):175-85.

15.

Extraction of kinetic information from single-molecule experiments.

Vlad MO, Ross J.

Chemphyschem. 2004 Nov 12;5(11):1671-8.

PMID:
15580926
16.

Enhanced (hydrodynamic) transport induced by population growth in reaction-diffusion systems with application to population genetics.

Vlad MO, Cavalli-Sforza LL, Ross J.

Proc Natl Acad Sci U S A. 2004 Jul 13;101(28):10249-53. Epub 2004 Jul 1.

17.

Response experiments for nonlinear systems with application to reaction kinetics and genetics.

Vlad MO, Arkin A, Ross J.

Proc Natl Acad Sci U S A. 2004 May 11;101(19):7223-8. Epub 2004 Apr 29.

18.

Nonlinear kinetics and new approaches to complex reaction mechanisms.

Ross J, Vlad MO.

Annu Rev Phys Chem. 1999;50:51-78.

PMID:
15012406
20.

Memory effects and oscillations in single-molecule kinetics.

Vlad MO, Moran F, Schneider FW, Ross J.

Proc Natl Acad Sci U S A. 2002 Oct 1;99(20):12548-55. Epub 2002 Sep 12.

21.

Neutrality condition and response law for nonlinear reaction-diffusion equations, with application to population genetics.

Vlad MO, Moran F, Tsuchiya M, Cavalli-Sforza LL, Oefner PJ, Ross J.

Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Jun;65(6 Pt 1):061110. Epub 2002 Jun 25.

PMID:
12188706
22.

Bayesian analysis of systems with random chemical composition: renormalization-group approach to Dirichlet distributions and the statistical theory of dilution.

Vlad MO, Tsuchiya M, Oefner P, Ross J.

Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Jan;65(1 Pt 1):011112. Epub 2001 Dec 20.

PMID:
11800682
23.

Levy diffusion in a force field, huber relaxation kinetics, and nonequilibrium thermodynamics: H theorem for enhanced diffusion with Levy white noise

Vlad MO, Ross J, Schneider FW.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 2000 Aug;62(2 Pt A):1743-63.

PMID:
11088636
24.

Statistical fractal adsorption isotherms, linear energy relations, and power-law trapping-time distributions in porous media

Vlad MO, Cerofolini G, Ross J.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 2000 Jul;62(1 Pt B):837-44.

PMID:
11088541
25.

Fluctuation-dissipation relations and universal behavior for relaxation processes in systems with static disorder and in the theory of mortality.

Vlad MO, Schönfisch B, Mackey MC.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1996 May;53(5):4703-4710. No abstract available.

PMID:
9964798
26.

Statistical fractals with cutoffs, Shlesinger-Hughes renormalization, and the onset of an epidemic.

Vlad MO, Mackey MC, Schönfisch B.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1996 Feb;53(2):1382-1398. No abstract available.

PMID:
9964398
27.

Jump clustering, Shlesinger-Hughes stochastic renormalization, and interacting Lévy flights.

Vlad MO, Mackey MC.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1995 Apr;51(4):3120-3125. No abstract available.

PMID:
9962990
28.

Stochastic renormalization-group approach to space-dependent supercritical branched chain processes.

Vlad MO, Mackey MC.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1995 Apr;51(4):3104-3119. No abstract available.

PMID:
9962989
29.

Generating functional approach to space- and time-dependent colored noise.

Vlad MO, Mackey MC, Ross J.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1994 Aug;50(2):798-821. No abstract available.

PMID:
9962041
30.

Fractal random processes with iterated logarithmic tails: A generalization of the Shlesinger-Hughes stochastic renormalization approach.

Vlad MO.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1993 Nov;48(5):3406-3408. No abstract available.

PMID:
9960997
31.
32.
33.

Enzyme catalysis as a chain reaction.

Szedlacsek SE, Duggleby RG, Vlad MO.

Biochem J. 1991 Nov 1;279 ( Pt 3):855-61. Review.

34.

Progress-curve equations for reversible enzyme-catalysed reactions inhibited by tight-binding inhibitors.

Szedlacsek SE, Ostafe V, Duggleby RG, Serban M, Vlad MO.

Biochem J. 1990 Feb 1;265(3):647-53.

35.

The optimal sex ratio for age-structured populations.

Vlad MO.

Math Biosci. 1989 Apr;93(2):181-90.

PMID:
2520028
36.

A re-evaluation of the kinetic equations for hyperbolic tight-binding inhibition.

Szedlacsek SE, Ostafe V, Serban M, Vlad MO.

Biochem J. 1988 Aug 15;254(1):311-2. No abstract available.

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