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Items: 1 to 50 of 58

1.

G-quadruplexes may determine the landscape of recombination in HSV-1.

Saranathan N, Biswas B, Patra A, Vivekanandan P.

BMC Genomics. 2019 May 16;20(1):382. doi: 10.1186/s12864-019-5731-0.

2.

Antibacterial and cytocompatibility study of modified Ti6Al4V surfaces through thermal annealing.

Patil D, Wasson MK, Aravindan S, Vivekanandan P, Rao PV.

Mater Sci Eng C Mater Biol Appl. 2019 Jun;99:1007-1020. doi: 10.1016/j.msec.2019.02.058. Epub 2019 Feb 16.

PMID:
30889633
3.

G-Quadruplexes: More Than Just a Kink in Microbial Genomes.

Saranathan N, Vivekanandan P.

Trends Microbiol. 2019 Feb;27(2):148-163. doi: 10.1016/j.tim.2018.08.011. Epub 2018 Sep 14. Review.

PMID:
30224157
4.

Hypervirulent Clostridium difficile ribotypes are CpG depleted.

Kamuju V, Kumar S, Khan WH, Vivekanandan P.

Virulence. 2018;9(1):1422-1425. doi: 10.1080/21505594.2018.1509669. No abstract available.

5.

Targeted next-generation sequencing reveals novel and rare variants in Indian patients with amyotrophic lateral sclerosis.

Narain P, Pandey A, Gupta S, Gomes J, Bhatia R, Vivekanandan P.

Neurobiol Aging. 2018 Nov;71:265.e9-265.e14. doi: 10.1016/j.neurobiolaging.2018.05.012. Epub 2018 May 17.

PMID:
29895397
6.

Identification of tell-tale patterns in the 3' non-coding region of hantaviruses that distinguish HCPS-causing hantaviruses from HFRS-causing hantaviruses.

Sankar S, Borkakoti J, Ramamurthy M, Nandagopal B, Vivekanandan P, Gopalan S.

Emerg Microbes Infect. 2018 Mar 21;7(1):32. doi: 10.1038/s41426-018-0027-z. No abstract available.

7.

Pac1 Signals of Human Herpesviruses Contain a Highly Conserved G-Quadruplex Motif.

Biswas B, Kumari P, Vivekanandan P.

ACS Infect Dis. 2018 May 11;4(5):744-751. doi: 10.1021/acsinfecdis.7b00279. Epub 2018 Mar 1.

PMID:
29493219
8.

HBeAg-induced miR-106b promotes cell growth by targeting the retinoblastoma gene.

Samal J, Kandpal M, Vivekanandan P.

Sci Rep. 2017 Oct 30;7(1):14371. doi: 10.1038/s41598-017-14652-x.

9.

A G-quadruplex motif in an envelope gene promoter regulates transcription and virion secretion in HBV genotype B.

Biswas B, Kandpal M, Vivekanandan P.

Nucleic Acids Res. 2017 Nov 2;45(19):11268-11280. doi: 10.1093/nar/gkx823.

10.

The CpG dinucleotide content of the HIV-1 envelope gene may predict disease progression.

Wasson MK, Borkakoti J, Kumar A, Biswas B, Vivekanandan P.

Sci Rep. 2017 Aug 15;7(1):8162. doi: 10.1038/s41598-017-08716-1.

11.

C9orf72 hexanucleotide repeat expansions and Ataxin 2 intermediate length repeat expansions in Indian patients with amyotrophic lateral sclerosis.

Narain P, Gomes J, Bhatia R, Singh I, Vivekanandan P.

Neurobiol Aging. 2017 Aug;56:211.e9-211.e14. doi: 10.1016/j.neurobiolaging.2017.04.011. Epub 2017 Apr 26.

PMID:
28527524
12.

Genome-wide analysis of G-quadruplexes in herpesvirus genomes.

Biswas B, Kandpal M, Jauhari UK, Vivekanandan P.

BMC Genomics. 2016 Nov 21;17(1):949.

13.

Effect of chitosan-ethylenediamine tetraacetic acid on Enterococcus faecalis dentinal biofilm and smear layer removal.

Geethapriya N, Subbiya A, Padmavathy K, Mahalakshmi K, Vivekanandan P, Sukumaran VG.

J Conserv Dent. 2016 Sep-Oct;19(5):472-7. doi: 10.4103/0972-0707.190022.

14.

A portable immunomagnetic cell capture system to accelerate culture diagnosis of bacterial infections.

Singh S, Upadhyay M, Sharma J, Gupta S, Vivekanandan P, Elangovan R.

Analyst. 2016 May 23;141(11):3358-66. doi: 10.1039/c6an00291a.

PMID:
27118505
15.

Depletion of CpG Dinucleotides in Papillomaviruses and Polyomaviruses: A Role for Divergent Evolutionary Pressures.

Upadhyay M, Vivekanandan P.

PLoS One. 2015 Nov 6;10(11):e0142368. doi: 10.1371/journal.pone.0142368. eCollection 2015.

16.

Enhanced hepatitis B virus (HBV) pre-genomic RNA levels and higher transcription efficiency of defective HBV genomes.

Kandpal M, Samal J, Biswas B, Negi A, Mishra VC, Tyagi N, Raina V, Vivekanandan P.

J Gen Virol. 2015 Oct;96(10):3109-17. doi: 10.1099/jgv.0.000256. Epub 2015 Aug 3.

PMID:
26242411
17.

Novel Insights on Hantavirus Evolution: The Dichotomy in Evolutionary Pressures Acting on Different Hantavirus Segments.

Sankar S, Upadhyay M, Ramamurthy M, Vadivel K, Sagadevan K, Nandagopal B, Vivekanandan P, Sridharan G.

PLoS One. 2015 Jul 20;10(7):e0133407. doi: 10.1371/journal.pone.0133407. eCollection 2015.

18.

Hepatitis B "e" antigen-mediated inhibition of HBV replication fitness and transcription efficiency in vitro.

Samal J, Kandpal M, Vivekanandan P.

Virology. 2015 Oct;484:234-40. doi: 10.1016/j.virol.2015.06.011. Epub 2015 Jun 25.

19.

A simple and rapid method for the quantitation of secreted hepatitis B virions in cell culture models.

Samal J, Kandpal M, Vivekanandan P.

Indian J Med Microbiol. 2015 Apr-Jun;33(2):290-2. doi: 10.4103/0255-0857.153568.

20.

Systematic CpT (ApG) depletion and CpG excess are unique genomic signatures of large DNA viruses infecting invertebrates.

Upadhyay M, Sharma N, Vivekanandan P.

PLoS One. 2014 Nov 4;9(11):e111793. doi: 10.1371/journal.pone.0111793. eCollection 2014.

21.

CpG dinucleotide frequencies reveal the role of host methylation capabilities in parvovirus evolution.

Upadhyay M, Samal J, Kandpal M, Vasaikar S, Biswas B, Gomes J, Vivekanandan P.

J Virol. 2013 Dec;87(24):13816-24. doi: 10.1128/JVI.02515-13. Epub 2013 Oct 9.

22.

Antibacterial efficacy of Mangifera indica L. kernel and Ocimum sanctum L. leaves against Enterococcus faecalis dentinal biofilm.

Subbiya A, Mahalakshmi K, Pushpangadan S, Padmavathy K, Vivekanandan P, Sukumaran VG.

J Conserv Dent. 2013 Sep;16(5):454-7. doi: 10.4103/0972-0707.117507.

23.

The Warburg effect: insights from the past decade.

Upadhyay M, Samal J, Kandpal M, Singh OV, Vivekanandan P.

Pharmacol Ther. 2013 Mar;137(3):318-30. doi: 10.1016/j.pharmthera.2012.11.003. Epub 2012 Nov 16. Review.

PMID:
23159371
24.

Ameliorative effect of silibinin against N-nitrosodimethylamine-induced hepatic fibrosis in rats.

Ezhilarasan D, Karthikeyan S, Vivekanandan P.

Environ Toxicol Pharmacol. 2012 Nov;34(3):1004-13. doi: 10.1016/j.etap.2012.07.004. Epub 2012 Jul 31.

PMID:
22986105
25.

Molecular mechanisms underlying occult hepatitis B virus infection.

Samal J, Kandpal M, Vivekanandan P.

Clin Microbiol Rev. 2012 Jan;25(1):142-63. doi: 10.1128/CMR.00018-11. Review.

26.

Influence of N-acetylcysteine against dimethylnitrosamine induced hepatotoxicity in rats.

Priya S, Vijayalakshmi P, Vivekanandan P, Karthikeyan S.

Toxicol Ind Health. 2011 Nov;27(10):914-22. doi: 10.1177/0748233711399323. Epub 2011 May 9.

PMID:
21558131
27.

Fibrolamellar carcinomas are positive for CD68.

Ross HM, Daniel HD, Vivekanandan P, Kannangai R, Yeh MM, Wu TT, Makhlouf HR, Torbenson M.

Mod Pathol. 2011 Mar;24(3):390-5. doi: 10.1038/modpathol.2010.207. Epub 2010 Nov 26.

28.

Molecular methods in the diagnosis and management of chronic hepatitis B.

Vivekanandan P, Singh OV.

Expert Rev Mol Diagn. 2010 Oct;10(7):921-35. doi: 10.1586/erm.10.75. Review.

PMID:
20964611
29.

Hepatitis B virus-associated hepatocellular carcinoma from India: role of viral genotype and mutations in CTNNB1 (beta-catenin) and TP53 genes.

Vivekanandan P, Torbenson M, Ramakrishna B.

J Gastrointest Cancer. 2011 Mar;42(1):20-5. doi: 10.1007/s12029-010-9222-4.

PMID:
20963515
30.

Mitochondrial mutations in hepatocellular carcinomas and fibrolamellar carcinomas.

Vivekanandan P, Daniel H, Yeh MM, Torbenson M.

Mod Pathol. 2010 Jun;23(6):790-8. doi: 10.1038/modpathol.2010.51. Epub 2010 Mar 12.

31.

HFE mutations in alpha-1-antitrypsin deficiency: an examination of cirrhotic explants.

Lam M, Torbenson M, Yeh MM, Vivekanandan P, Ferrell L.

Mod Pathol. 2010 May;23(5):637-43. doi: 10.1038/modpathol.2010.42. Epub 2010 Mar 5.

32.

Hepatitis B virus replication induces methylation of both host and viral DNA.

Vivekanandan P, Daniel HD, Kannangai R, Martinez-Murillo F, Torbenson M.

J Virol. 2010 May;84(9):4321-9. doi: 10.1128/JVI.02280-09. Epub 2010 Feb 10.

33.

Kupffer cells are depleted with HIV immunodeficiency and partially recovered with antiretroviral immune reconstitution.

Balagopal A, Ray SC, De Oca RM, Sutcliffe CG, Vivekanandan P, Higgins Y, Mehta SH, Moore RD, Sulkowski MS, Thomas DL, Torbenson MS.

AIDS. 2009 Nov 27;23(18):2397-404. doi: 10.1097/QAD.0b013e3283324344.

34.

Therapeutic microRNA delivery suppresses tumorigenesis in a murine liver cancer model.

Kota J, Chivukula RR, O'Donnell KA, Wentzel EA, Montgomery CL, Hwang HW, Chang TC, Vivekanandan P, Torbenson M, Clark KR, Mendell JR, Mendell JT.

Cell. 2009 Jun 12;137(6):1005-17. doi: 10.1016/j.cell.2009.04.021.

35.

Marked iron in liver explants in the absence of major hereditary hemochromatosis gene defects: a risk factor for cardiac failure.

Fenton H, Torbenson M, Vivekanandan P, Yeh MM, Hart J, Ferrell L.

Transplantation. 2009 Apr 27;87(8):1256-60. doi: 10.1097/TP.0b013e31819f2280.

PMID:
19384175
36.

Methylation regulates hepatitis B viral protein expression.

Vivekanandan P, Thomas D, Torbenson M.

J Infect Dis. 2009 May 1;199(9):1286-91. doi: 10.1086/597614.

37.

MicroRNA-21 is overexpressed in human cholangiocarcinoma and regulates programmed cell death 4 and tissue inhibitor of metalloproteinase 3.

Selaru FM, Olaru AV, Kan T, David S, Cheng Y, Mori Y, Yang J, Paun B, Jin Z, Agarwal R, Hamilton JP, Abraham J, Georgiades C, Alvarez H, Vivekanandan P, Yu W, Maitra A, Torbenson M, Thuluvath PJ, Gores GJ, LaRusso NF, Hruban R, Meltzer SJ.

Hepatology. 2009 May;49(5):1595-601. doi: 10.1002/hep.22838.

38.

Hepatitis in common variable immunodeficiency.

Daniels JA, Torbenson M, Vivekanandan P, Anders RA, Boitnott JK.

Hum Pathol. 2009 Apr;40(4):484-8. doi: 10.1016/j.humpath.2008.09.008. Epub 2008 Dec 11.

PMID:
19084266
39.

Correlation between hepatitis B genotypes, 1896 precore mutation, virus loads and liver dysfunction in an Indian population.

Vivekanandan P, Bissett S, Ijaz S, Teo CG, Sridharan G, Raghuraman S, Daniel HD, Kavitha ML, Daniel D, Chandy GM, Abraham P.

Indian J Gastroenterol. 2008 Jul-Aug;27(4):142-7.

PMID:
18974463
40.

Anterior gradient-2 is overexpressed by fibrolamellar carcinomas.

Vivekanandan P, Micchelli ST, Torbenson M.

Hum Pathol. 2009 Mar;40(3):293-9. doi: 10.1016/j.humpath.2008.08.003. Epub 2008 Oct 29.

41.

A quantitative proteomic approach for identification of potential biomarkers in hepatocellular carcinoma.

Chaerkady R, Harsha HC, Nalli A, Gucek M, Vivekanandan P, Akhtar J, Cole RN, Simmers J, Schulick RD, Singh S, Torbenson M, Pandey A, Thuluvath PJ.

J Proteome Res. 2008 Oct;7(10):4289-98. doi: 10.1021/pr800197z. Epub 2008 Aug 21.

42.

O Labeling for a Quantitative Proteomic Analysis of Glycoproteins in Hepatocellular Carcinoma.

Chaerkady R, Thuluvath PJ, Kim MS, Nalli A, Vivekanandan P, Simmers J, Torbenson M, Pandey A.

Clin Proteomics. 2008 Jul 18;4(3-4):137-155.

43.

Comprehensive genetic and epigenetic analysis of occult hepatitis B from liver tissue samples.

Vivekanandan P, Kannangai R, Ray SC, Thomas DL, Torbenson M.

Clin Infect Dis. 2008 Apr 15;46(8):1227-36. doi: 10.1086/529437.

44.

High-dimensional biology to comprehend hepatocellular carcinoma.

Vivekanandan P, Singh OV.

Expert Rev Proteomics. 2008 Feb;5(1):45-60. doi: 10.1586/14789450.5.1.45. Review.

PMID:
18282123
45.

Epigenetic instability is rare in fibrolamellar carcinomas but common in viral-associated hepatocellular carcinomas.

Vivekanandan P, Torbenson M.

Mod Pathol. 2008 Jun;21(6):670-5. doi: 10.1038/modpathol.2008.32. Epub 2008 Feb 8.

46.

Malignant transformation of hepatic adenomas.

Micchelli ST, Vivekanandan P, Boitnott JK, Pawlik TM, Choti MA, Torbenson M.

Mod Pathol. 2008 Apr;21(4):491-7. doi: 10.1038/modpathol.2008.8. Epub 2008 Feb 1.

47.

Novel digestion patterns with hepatitis B virus strains from the Indian subcontinent detected using restriction fragment length polymorphism.

Vivekanandan P, Daniel HD, Raghuraman S, Daniel D, Shaji RV, Sridharan G, Chandy G, Abraham P.

Indian J Med Microbiol. 2008 Jan-Mar;26(1):96-7. No abstract available.

48.

Hepatitis B viral DNA is methylated in liver tissues.

Vivekanandan P, Thomas D, Torbenson M.

J Viral Hepat. 2008 Feb;15(2):103-7. doi: 10.1111/j.1365-2893.2007.00905.x.

PMID:
18184192
49.

Low frequency of Helicobacter DNA in benign and malignant liver tissues from Baltimore, United States.

Vivekanandan P, Torbenson M.

Hum Pathol. 2008 Feb;39(2):213-6. Epub 2007 Oct 18.

50.

Protective effect of picroliv against hydrazine-induced hyperlipidemia and hepatic steatosis in rats.

Vivekanandan P, Gobianand K, Priya S, Vijayalakshmi P, Karthikeyan S.

Drug Chem Toxicol. 2007;30(3):241-52.

PMID:
17613009

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