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Items: 1 to 50 of 102

1.

Differential Effects of Phosphorus Fertilization on Plant Uptake and Rhizosphere Microbiome of Cultivated and Non-cultivated Potatoes.

Pantigoso HA, Manter DK, Vivanco JM.

Microb Ecol. 2020 Feb 3. doi: 10.1007/s00248-020-01486-w. [Epub ahead of print]

PMID:
32016609
2.

Isolation of Klebsiella pneumoniae and Pseudomonas aeruginosa from entomopathogenic nematode-insect host relationship to examine bacterial pathogenicity on Trichoplusia ni.

He Y, Qin Q, DiLegge MJ, Vivanco JM.

Microb Pathog. 2019 Oct;135:103606. doi: 10.1016/j.micpath.2019.103606. Epub 2019 Jun 20.

PMID:
31228543
3.
4.

Co-inoculation of Bacillus sp. and Pseudomonas putida at different development stages acts as a biostimulant to promote growth, yield and nutrient uptake of tomato.

He Y, Pantigoso HA, Wu Z, Vivanco JM.

J Appl Microbiol. 2019 Jul;127(1):196-207. doi: 10.1111/jam.14273. Epub 2019 May 8.

PMID:
30955229
5.

Trichoderma gamsii affected herbivore feeding behaviour on Arabidopsis thaliana by modifying the leaf metabolome and phytohormones.

Zhou D, Huang XF, Guo J, Dos-Santos ML, Vivanco JM.

Microb Biotechnol. 2018 Nov;11(6):1195-1206. doi: 10.1111/1751-7915.13310. Epub 2018 Sep 17.

6.

Root exudates drive the soil-borne legacy of aboveground pathogen infection.

Yuan J, Zhao J, Wen T, Zhao M, Li R, Goossens P, Huang Q, Bai Y, Vivanco JM, Kowalchuk GA, Berendsen RL, Shen Q.

Microbiome. 2018 Sep 12;6(1):156. doi: 10.1186/s40168-018-0537-x.

7.

Guest editorial: Plants and their surrounding microorganisms: a dynamic world of interactions.

Silva-Filho MC, Vivanco JM.

Curr Opin Microbiol. 2017 Jun;37:v-vi. doi: 10.1016/j.mib.2017.09.016. No abstract available.

PMID:
29096912
8.

Bacterial Microbiome and Nematode Occurrence in Different Potato Agricultural Soils.

Castillo JD, Vivanco JM, Manter DK.

Microb Ecol. 2017 Nov;74(4):888-900. doi: 10.1007/s00248-017-0990-2. Epub 2017 May 20.

PMID:
28528399
9.

Plant-insect-pathogen interactions: a naturally complex ménage à trois.

Franco FP, Moura DS, Vivanco JM, Silva-Filho MC.

Curr Opin Microbiol. 2017 Jun;37:54-60. doi: 10.1016/j.mib.2017.04.007. Epub 2017 May 6. Review.

PMID:
28486146
10.

The unseen rhizosphere root-soil-microbe interactions for crop production.

Zhang R, Vivanco JM, Shen Q.

Curr Opin Microbiol. 2017 Jun;37:8-14. doi: 10.1016/j.mib.2017.03.008. Epub 2017 Apr 21. Review.

PMID:
28433932
11.

Supplementing Blends of Sugars, Amino Acids, and Secondary Metabolites to the Diet of Termites (Reticulitermes flavipes) Drive Distinct Gut Bacterial Communities.

Huang XF, Chaparro JM, Reardon KF, Judd TM, Vivanco JM.

Microb Ecol. 2016 Oct;72(3):497-502. doi: 10.1007/s00248-016-0792-y. Epub 2016 Jun 23.

PMID:
27338261
12.

Soil memory as a potential mechanism for encouraging sustainable plant health and productivity.

Lapsansky ER, Milroy AM, Andales MJ, Vivanco JM.

Curr Opin Biotechnol. 2016 Apr;38:137-42. doi: 10.1016/j.copbio.2016.01.014. Epub 2016 Feb 19. Review.

PMID:
26897653
13.

Organic acids from root exudates of banana help root colonization of PGPR strain Bacillus amyloliquefaciens NJN-6.

Yuan J, Zhang N, Huang Q, Raza W, Li R, Vivanco JM, Shen Q.

Sci Rep. 2015 Aug 24;5:13438. doi: 10.1038/srep13438.

14.

Linking Jasmonic Acid Signaling, Root Exudates, and Rhizosphere Microbiomes.

Carvalhais LC, Dennis PG, Badri DV, Kidd BN, Vivanco JM, Schenk PM.

Mol Plant Microbe Interact. 2015 Sep;28(9):1049-58. doi: 10.1094/MPMI-01-15-0016-R. Epub 2015 Aug 26.

15.

Plant-plant-microbe mechanisms involved in soil-borne disease suppression on a maize and pepper intercropping system.

Yang M, Zhang Y, Qi L, Mei X, Liao J, Ding X, Deng W, Fan L, He X, Vivanco JM, Li C, Zhu Y, Zhu S.

PLoS One. 2014 Dec 31;9(12):e115052. doi: 10.1371/journal.pone.0115052. eCollection 2014.

16.

Bacillus spp. from rainforest soil promote plant growth under limited nitrogen conditions.

Huang XF, Zhou D, Guo J, Manter DK, Reardon KF, Vivanco JM.

J Appl Microbiol. 2015 Mar;118(3):672-84. doi: 10.1111/jam.12720. Epub 2015 Jan 28.

17.

Enhanced rhizosphere colonization of beneficial Bacillus amyloliquefaciens SQR9 by pathogen infection.

Liu Y, Zhang N, Qiu M, Feng H, Vivanco JM, Shen Q, Zhang R.

FEMS Microbiol Lett. 2014 Apr;353(1):49-56. doi: 10.1111/1574-6968.12406. Epub 2014 Mar 19.

18.

Rhizosphere microbiome assemblage is affected by plant development.

Chaparro JM, Badri DV, Vivanco JM.

ISME J. 2014 Apr;8(4):790-803. doi: 10.1038/ismej.2013.196. Epub 2013 Nov 7.

19.

Effect of plant sterols and tannins on Phytophthora ramorum growth and sporulation.

Stong RA, Kolodny E, Kelsey RG, González-Hernández MP, Vivanco JM, Manter DK.

J Chem Ecol. 2013 Jun;39(6):733-43. doi: 10.1007/s10886-013-0295-y. Epub 2013 May 21.

PMID:
23689874
20.

Variations in diversity and richness of gut bacterial communities of termites (Reticulitermes flavipes) fed with grassy and woody plant substrates.

Huang XF, Bakker MG, Judd TM, Reardon KF, Vivanco JM.

Microb Ecol. 2013 Apr;65(3):531-6. doi: 10.1007/s00248-013-0219-y. Epub 2013 Mar 26.

PMID:
23529653
21.

Activation of the jasmonic acid plant defence pathway alters the composition of rhizosphere bacterial communities.

Carvalhais LC, Dennis PG, Badri DV, Tyson GW, Vivanco JM, Schenk PM.

PLoS One. 2013;8(2):e56457. doi: 10.1371/journal.pone.0056457. Epub 2013 Feb 12.

22.

Root exudation of phytochemicals in Arabidopsis follows specific patterns that are developmentally programmed and correlate with soil microbial functions.

Chaparro JM, Badri DV, Bakker MG, Sugiyama A, Manter DK, Vivanco JM.

PLoS One. 2013;8(2):e55731. doi: 10.1371/journal.pone.0055731. Epub 2013 Feb 1. Erratum in: PLoS One. 2013;8(8). doi: 10.1371/annotation/51142aed-2d94-4195-8a8a-9cb24b3c733b.

23.

Potential impact of soil microbiomes on the leaf metabolome and on herbivore feeding behavior.

Badri DV, Zolla G, Bakker MG, Manter DK, Vivanco JM.

New Phytol. 2013 Apr;198(1):264-73. doi: 10.1111/nph.12124. Epub 2013 Jan 25.

24.

Isolation and characterization of lignin-degrading bacteria from rainforest soils.

Huang XF, Santhanam N, Badri DV, Hunter WJ, Manter DK, Decker SR, Vivanco JM, Reardon KF.

Biotechnol Bioeng. 2013 Jun;110(6):1616-26. doi: 10.1002/bit.24833. Epub 2013 Feb 9.

PMID:
23297115
25.

Application of natural blends of phytochemicals derived from the root exudates of Arabidopsis to the soil reveal that phenolic-related compounds predominantly modulate the soil microbiome.

Badri DV, Chaparro JM, Zhang R, Shen Q, Vivanco JM.

J Biol Chem. 2013 Feb 15;288(7):4502-12. doi: 10.1074/jbc.M112.433300. Epub 2013 Jan 4. Erratum in: J Biol Chem. 2013 Oct 18;288(42):30503.

26.

Root secreted metabolites and proteins are involved in the early events of plant-plant recognition prior to competition.

Badri DV, De-la-Peña C, Lei Z, Manter DK, Chaparro JM, Guimarães RL, Sumner LW, Vivanco JM.

PLoS One. 2012;7(10):e46640. doi: 10.1371/journal.pone.0046640. Epub 2012 Oct 2.

27.

Influence of ATP-Binding Cassette Transporters in Root Exudation of Phytoalexins, Signals, and in Disease Resistance.

Badri DV, Chaparro JM, Manter DK, Martinoia E, Vivanco JM.

Front Plant Sci. 2012 Jul 5;3:149. doi: 10.3389/fpls.2012.00149. eCollection 2012. Retraction in: Front Plant Sci. 2013;4:424.

28.

Expression of industrially relevant laccases: prokaryotic style.

Santhanam N, Vivanco JM, Decker SR, Reardon KF.

Trends Biotechnol. 2011 Oct;29(10):480-9. doi: 10.1016/j.tibtech.2011.04.005. Review.

PMID:
21640417
29.

Enterobacter soli sp. nov.: a lignin-degrading γ-proteobacteria isolated from soil.

Manter DK, Hunter WJ, Vivanco JM.

Curr Microbiol. 2011 Mar;62(3):1044-9. doi: 10.1007/s00284-010-9809-9. Epub 2010 Nov 23.

PMID:
21104086
30.

Pyrosequencing Assessment of Soil Microbial Communities in Organic and Conventional Potato Farms.

Sugiyama A, Vivanco JM, Jayanty SS, Manter DK.

Plant Dis. 2010 Nov;94(11):1329-1335. doi: 10.1094/PDIS-02-10-0090.

PMID:
30743621
31.

Root secretion of defense-related proteins is development-dependent and correlated with flowering time.

De-la-Peña C, Badri DV, Lei Z, Watson BS, Brandão MM, Silva-Filho MC, Sumner LW, Vivanco JM.

J Biol Chem. 2010 Oct 1;285(40):30654-65. doi: 10.1074/jbc.M110.119040. Epub 2010 Aug 3.

32.

Plant neighbor identity influences plant biochemistry and physiology related to defense.

Broz AK, Broeckling CD, De-la-Peña C, Lewis MR, Greene E, Callaway RM, Sumner LW, Vivanco JM.

BMC Plant Biol. 2010 Jun 17;10:115. doi: 10.1186/1471-2229-10-115.

33.

Pseudomonas putida KT2440 causes induced systemic resistance and changes in Arabidopsis root exudation.

Matilla MA, Ramos JL, Bakker PA, Doornbos R, Badri DV, Vivanco JM, Ramos-González MI.

Environ Microbiol Rep. 2010 Jun;2(3):381-8. doi: 10.1111/j.1758-2229.2009.00091.x. Epub 2009 Nov 4.

PMID:
23766110
34.

Root secretion of phytochemicals in Arabidopsis is predominantly not influenced by diurnal rhythms.

Badri DV, Loyola-Vargas VM, Broeckling CD, Vivanco JM.

Mol Plant. 2010 May;3(3):491-8. doi: 10.1093/mp/ssq004. Epub 2010 Feb 12. Erratum in: Mol Plant. 2015 Feb;8(2):343-4.

35.

Negative effects of sample pooling on PCR-based estimates of soil microbial richness and community structure.

Manter DK, Weir TL, Vivanco JM.

Appl Environ Microbiol. 2010 Apr;76(7):2086-90. doi: 10.1128/AEM.03017-09. Epub 2010 Feb 5.

36.

Rhizosphere chemical dialogues: plant-microbe interactions.

Badri DV, Weir TL, van der Lelie D, Vivanco JM.

Curr Opin Biotechnol. 2009 Dec;20(6):642-50. doi: 10.1016/j.copbio.2009.09.014. Epub 2009 Oct 28. Review.

PMID:
19875278
37.

An ABC transporter mutation alters root exudation of phytochemicals that provoke an overhaul of natural soil microbiota.

Badri DV, Quintana N, El Kassis EG, Kim HK, Choi YH, Sugiyama A, Verpoorte R, Martinoia E, Manter DK, Vivanco JM.

Plant Physiol. 2009 Dec;151(4):2006-17. doi: 10.1104/pp.109.147462. Epub 2009 Oct 23.

38.

Retraction. Metabolic profiling of root exudates of Arabidopsis thaliana.

Walker TS, Bais HP, Halligan KM, Stermitz FR, Vivanco JM.

J Agric Food Chem. 2009 Oct 14;57(19):9346. doi: 10.1021/jf902670b. No abstract available.

PMID:
19807167
39.

Bacterial attraction and quorum sensing inhibition in Caenorhabditis elegans exudates.

Kaplan F, Badri DV, Zachariah C, Ajredini R, Sandoval FJ, Roje S, Levine LH, Zhang F, Robinette SL, Alborn HT, Zhao W, Stadler M, Nimalendran R, Dossey AT, Brüschweiler R, Vivanco JM, Edison AS.

J Chem Ecol. 2009 Aug;35(8):878-92. doi: 10.1007/s10886-009-9670-0. Epub 2009 Aug 4.

40.

Phytotoxic compounds from roots of Centaurea diffusa Lam.

Quintana N, El Kassis EG, Stermitz FR, Vivanco JM.

Plant Signal Behav. 2009 Jan;4(1):9-14.

41.

Retraction notice to 7,8-benzoflavone: a phytotoxin from root exudates of invasive Russian knapweed [Phytochemistry 64 (2003) 493-497].

Stermitz FR, Bais HP, Foderaro TA, Vivanco JM.

Phytochemistry. 2009 Jan;70(1):156. No abstract available.

PMID:
19330947
42.

Plant origin and ploidy influence gene expression and life cycle characteristics in an invasive weed.

Broz AK, Manter DK, Bowman G, Müller-Schärer H, Vivanco JM.

BMC Plant Biol. 2009 Mar 23;9:33. doi: 10.1186/1471-2229-9-33.

43.

Regulation and function of root exudates.

Badri DV, Vivanco JM.

Plant Cell Environ. 2009 Jun;32(6):666-81. doi: 10.1111/j.1365-3040.2008.01926.x. Review.

44.

Translation Inhibition of Capped and Uncapped Viral RNAs Mediated by Ribosome-Inactivating Proteins.

Vivanco JM, Tumer NE.

Phytopathology. 2003 May;93(5):588-95. doi: 10.1094/PHYTO.2003.93.5.588.

45.

Phytotoxic polyacetylenes from roots of Russian knapweed (Acroptilon repens (L.) DC.).

Quintana N, Weir TL, Du J, Broeckling CD, Rieder JP, Stermitz FR, Paschke MW, Vivanco JM.

Phytochemistry. 2008 Oct;69(14):2572-8. doi: 10.1016/j.phytochem.2008.07.015. Epub 2008 Sep 11. Erratum in: Phytochemistry. 2009 Feb;70(3):437.

PMID:
18789460
46.

Root-microbe communication through protein secretion.

De-la-Peña C, Lei Z, Watson BS, Sumner LW, Vivanco JM.

J Biol Chem. 2008 Sep 12;283(37):25247-55. doi: 10.1074/jbc.M801967200. Epub 2008 Jul 17.

47.

Phytotoxic catechin leached by seeds of the tropical weed Sesbania virgata.

Simões K, Du J, Kretzschmar FS, Broeckling CD, Stermitz FS, Vivanco JM, Braga MR.

J Chem Ecol. 2008 May;34(5):681-7. doi: 10.1007/s10886-008-9443-1. Epub 2008 Apr 22.

PMID:
18427901
48.

Transcriptome analysis of Arabidopsis roots treated with signaling compounds: a focus on signal transduction, metabolic regulation and secretion.

Badri DV, Loyola-Vargas VM, Du J, Stermitz FR, Broeckling CD, Iglesias-Andreu L, Vivanco JM.

New Phytol. 2008;179(1):209-23. doi: 10.1111/j.1469-8137.2008.02458.x. Epub 2008 Apr 18. Erratum in: New Phytol. 2014 Mar;201(4):1508.

49.

Novel role for pectin methylesterase in Arabidopsis: a new function showing ribosome-inactivating protein (RIP) activity.

De-la-Peña C, Badri DV, Vivanco JM.

Biochim Biophys Acta. 2008 May;1780(5):773-83. doi: 10.1016/j.bbagen.2007.12.013. Epub 2008 Jan 3.

PMID:
18222123
50.

Root exudates regulate soil fungal community composition and diversity.

Broeckling CD, Broz AK, Bergelson J, Manter DK, Vivanco JM.

Appl Environ Microbiol. 2008 Feb;74(3):738-44. Epub 2007 Dec 14.

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