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Items: 44

1.

Bark and Grape Microbiome of Vitis vinifera: Influence of Geographic Patterns and Agronomic Management on Bacterial Diversity.

Vitulo N, Lemos WJF Jr, Calgaro M, Confalone M, Felis GE, Zapparoli G, Nardi T.

Front Microbiol. 2019 Jan 8;9:3203. doi: 10.3389/fmicb.2018.03203. eCollection 2018.

2.

Multilevel comparative bioinformatics to investigate evolutionary relationships and specificities in gene annotations: an example for tomato and grapevine.

Ambrosino L, Ruggieri V, Bostan H, Miralto M, Vitulo N, Zouine M, Barone A, Bouzayen M, Frusciante L, Pezzotti M, Valle G, Chiusano ML.

BMC Bioinformatics. 2018 Nov 30;19(Suppl 15):435. doi: 10.1186/s12859-018-2420-y.

3.

Biocontrol traits of Bacillus licheniformis GL174, a culturable endophyte of Vitis vinifera cv. Glera.

Nigris S, Baldan E, Tondello A, Zanella F, Vitulo N, Favaro G, Guidolin V, Bordin N, Telatin A, Barizza E, Marcato S, Zottini M, Squartini A, Valle G, Baldan B.

BMC Microbiol. 2018 Oct 16;18(1):133. doi: 10.1186/s12866-018-1306-5.

4.

Genomic analysis of Sparus aurata reveals the evolutionary dynamics of sex-biased genes in a sequential hermaphrodite fish.

Pauletto M, Manousaki T, Ferraresso S, Babbucci M, Tsakogiannis A, Louro B, Vitulo N, Quoc VH, Carraro R, Bertotto D, Franch R, Maroso F, Aslam ML, Sonesson AK, Simionati B, Malacrida G, Cestaro A, Caberlotto S, Sarropoulou E, Mylonas CC, Power DM, Patarnello T, Canario AVM, Tsigenopoulos C, Bargelloni L.

Commun Biol. 2018 Aug 17;1:119. doi: 10.1038/s42003-018-0122-7. eCollection 2018.

5.

Timing and Order of the Molecular Events Marking the Onset of Berry Ripening in Grapevine.

Fasoli M, Richter CL, Zenoni S, Bertini E, Vitulo N, Dal Santo S, Dokoozlian N, Pezzotti M, Tornielli GB.

Plant Physiol. 2018 Nov;178(3):1187-1206. doi: 10.1104/pp.18.00559. Epub 2018 Sep 17.

6.
7.

High-Throughput Sequencing of microRNAs in Glucocorticoid Sensitive Paediatric Inflammatory Bowel Disease Patients.

De Iudicibus S, Lucafò M, Vitulo N, Martelossi S, Zimbello R, De Pascale F, Forcato C, Naviglio S, Di Silvestre A, Gerdol M, Stocco G, Valle G, Ventura A, Bramuzzo M, Decorti G.

Int J Mol Sci. 2018 May 8;19(5). pii: E1399. doi: 10.3390/ijms19051399.

8.

Molecular basis of autotrophic vs mixotrophic growth in Chlorella sorokiniana.

Cecchin M, Benfatto S, Griggio F, Mori A, Cazzaniga S, Vitulo N, Delledonne M, Ballottari M.

Sci Rep. 2018 Apr 24;8(1):6465. doi: 10.1038/s41598-018-24979-8.

9.
10.

QueryOR: a comprehensive web platform for genetic variant analysis and prioritization.

Bertoldi L, Forcato C, Vitulo N, Birolo G, De Pascale F, Feltrin E, Schiavon R, Anglani F, Negrisolo S, Zanetti A, D'Avanzo F, Tomanin R, Faulkner G, Vezzi A, Valle G.

BMC Bioinformatics. 2017 Apr 28;18(1):225. doi: 10.1186/s12859-017-1654-4.

11.

Downregulation of lizard immuno-genes in the regenerating tail and myogenes in the scarring limb suggests that tail regeneration occurs in an immuno-privileged organ.

Vitulo N, Dalla Valle L, Skobo T, Valle G, Alibardi L.

Protoplasma. 2017 Nov;254(6):2127-2141. doi: 10.1007/s00709-017-1107-y. Epub 2017 Mar 29.

PMID:
28357509
12.

The Accumulation of miRNAs Differentially Modulated by Drought Stress Is Affected by Grafting in Grapevine.

Pagliarani C, Vitali M, Ferrero M, Vitulo N, Incarbone M, Lovisolo C, Valle G, Schubert A.

Plant Physiol. 2017 Apr;173(4):2180-2195. doi: 10.1104/pp.16.01119. Epub 2017 Feb 24.

13.

Transcriptional Characterization of a Widely-Used Grapevine Rootstock Genotype under Different Iron-Limited Conditions.

Vannozzi A, Donnini S, Vigani G, Corso M, Valle G, Vitulo N, Bonghi C, Zocchi G, Lucchin M.

Front Plant Sci. 2017 Jan 5;7:1994. doi: 10.3389/fpls.2016.01994. eCollection 2016.

14.
15.

Direct 16S rRNA-seq from bacterial communities: a PCR-independent approach to simultaneously assess microbial diversity and functional activity potential of each taxon.

Rosselli R, Romoli O, Vitulo N, Vezzi A, Campanaro S, de Pascale F, Schiavon R, Tiarca M, Poletto F, Concheri G, Valle G, Squartini A.

Sci Rep. 2016 Aug 31;6:32165. doi: 10.1038/srep32165.

16.

Light Remodels Lipid Biosynthesis in Nannochloropsis gaditana by Modulating Carbon Partitioning between Organelles.

Alboresi A, Perin G, Vitulo N, Diretto G, Block M, Jouhet J, Meneghesso A, Valle G, Giuliano G, Maréchal E, Morosinotto T.

Plant Physiol. 2016 Aug;171(4):2468-82. doi: 10.1104/pp.16.00599. Epub 2016 Jun 20.

17.

Transcriptome dynamics in the asexual cycle of the chordate Botryllus schlosseri.

Campagna D, Gasparini F, Franchi N, Vitulo N, Ballin F, Manni L, Valle G, Ballarin L.

BMC Genomics. 2016 Apr 2;17:275. doi: 10.1186/s12864-016-2598-1.

18.

Grapevine Rootstocks Differentially Affect the Rate of Ripening and Modulate Auxin-Related Genes in Cabernet Sauvignon Berries.

Corso M, Vannozzi A, Ziliotto F, Zouine M, Maza E, Nicolato T, Vitulo N, Meggio F, Valle G, Bouzayen M, Müller M, Munné-Bosch S, Lucchin M, Bonghi C.

Front Plant Sci. 2016 Feb 9;7:69. doi: 10.3389/fpls.2016.00069. eCollection 2016.

19.

SATRAP: SOLiD Assembler TRAnslation Program.

Campagna D, Gasparini F, Franchi N, Manni L, Telatin A, Vitulo N, Ballarin L, Valle G.

PLoS One. 2015 Sep 14;10(9):e0137436. doi: 10.1371/journal.pone.0137436. eCollection 2015.

20.

Comprehensive transcript profiling of two grapevine rootstock genotypes contrasting in drought susceptibility links the phenylpropanoid pathway to enhanced tolerance.

Corso M, Vannozzi A, Maza E, Vitulo N, Meggio F, Pitacco A, Telatin A, D'Angelo M, Feltrin E, Negri AS, Prinsi B, Valle G, Ramina A, Bouzayen M, Bonghi C, Lucchin M.

J Exp Bot. 2015 Sep;66(19):5739-52. doi: 10.1093/jxb/erv274. Epub 2015 Jun 2.

21.

Profiling of skeletal muscle Ankrd2 protein in human cardiac tissue and neonatal rat cardiomyocytes.

Jasnic-Savovic J, Nestorovic A, Savic S, Karasek S, Vitulo N, Valle G, Faulkner G, Radojkovic D, Kojic S.

Histochem Cell Biol. 2015 Jun;143(6):583-97. doi: 10.1007/s00418-015-1307-5. Epub 2015 Jan 14.

PMID:
25585647
22.

Ecotype diversity and conversion in Photobacterium profundum strains.

Lauro FM, Eloe-Fadrosh EA, Richter TK, Vitulo N, Ferriera S, Johnson JH, Bartlett DH.

PLoS One. 2014 May 13;9(5):e96953. doi: 10.1371/journal.pone.0096953. eCollection 2014.

23.

A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype.

Vitulo N, Forcato C, Carpinelli EC, Telatin A, Campagna D, D'Angelo M, Zimbello R, Corso M, Vannozzi A, Bonghi C, Lucchin M, Valle G.

BMC Plant Biol. 2014 Apr 17;14:99. doi: 10.1186/1471-2229-14-99.

24.

ZASP interacts with the mechanosensing protein Ankrd2 and p53 in the signalling network of striated muscle.

Martinelli VC, Kyle WB, Kojic S, Vitulo N, Li Z, Belgrano A, Maiuri P, Banks L, Vatta M, Valle G, Faulkner G.

PLoS One. 2014 Mar 19;9(3):e92259. doi: 10.1371/journal.pone.0092259. eCollection 2014.

25.

RNA sequencing of the exercise transcriptome in equine athletes.

Capomaccio S, Vitulo N, Verini-Supplizi A, Barcaccia G, Albiero A, D'Angelo M, Campagna D, Valle G, Felicetti M, Silvestrelli M, Cappelli K.

PLoS One. 2013 Dec 31;8(12):e83504. doi: 10.1371/journal.pone.0083504. eCollection 2013.

26.

Chromosome scale genome assembly and transcriptome profiling of Nannochloropsis gaditana in nitrogen depletion.

Corteggiani Carpinelli E, Telatin A, Vitulo N, Forcato C, D'Angelo M, Schiavon R, Vezzi A, Giacometti GM, Morosinotto T, Valle G.

Mol Plant. 2014 Feb;7(2):323-35. doi: 10.1093/mp/sst120. Epub 2013 Aug 21.

27.

High mortality of juvenile gilthead sea bream (Sparus aurata) from photobacteriosis is associated with alternative macrophage activation and anti-inflammatory response: results of gene expression profiling of early responses in the head kidney.

Pellizzari C, Krasnov A, Afanasyev S, Vitulo N, Franch R, Pegolo S, Patarnello T, Bargelloni L.

Fish Shellfish Immunol. 2013 May;34(5):1269-78. doi: 10.1016/j.fsi.2013.02.007. Epub 2013 Feb 24.

PMID:
23485716
28.

PASS-bis: a bisulfite aligner suitable for whole methylome analysis of Illumina and SOLiD reads.

Campagna D, Telatin A, Forcato C, Vitulo N, Valle G.

Bioinformatics. 2013 Jan 15;29(2):268-70. doi: 10.1093/bioinformatics/bts675. Epub 2012 Nov 17.

PMID:
23162053
29.

First survey of the wheat chromosome 5A composition through a next generation sequencing approach.

Vitulo N, Albiero A, Forcato C, Campagna D, Dal Pero F, Bagnaresi P, Colaiacovo M, Faccioli P, Lamontanara A, Šimková H, Kubaláková M, Perrotta G, Facella P, Lopez L, Pietrella M, Gianese G, Doležel J, Giuliano G, Cattivelli L, Valle G, Stanca AM.

PLoS One. 2011;6(10):e26421. doi: 10.1371/journal.pone.0026421. Epub 2011 Oct 18.

30.

Transcription of LINE-derived sequences in exercise-induced stress in horses.

Capomaccio S, Verini-Supplizi A, Galla G, Vitulo N, Barcaccia G, Felicetti M, Silvestrelli M, Cappelli K.

Anim Genet. 2010 Dec;41 Suppl 2:23-7. doi: 10.1111/j.1365-2052.2010.02094.x.

PMID:
21070272
31.

Different phylogenomic approaches to resolve the evolutionary relationships among model fish species.

Negrisolo E, Kuhl H, Forcato C, Vitulo N, Reinhardt R, Patarnello T, Bargelloni L.

Mol Biol Evol. 2010 Dec;27(12):2757-74. doi: 10.1093/molbev/msq165. Epub 2010 Jun 29.

PMID:
20591844
32.

Development of an oligo DNA microarray for the European sea bass and its application to expression profiling of jaw deformity.

Ferraresso S, Milan M, Pellizzari C, Vitulo N, Reinhardt R, Canario AV, Patarnello T, Bargelloni L.

BMC Genomics. 2010 Jun 3;11:354. doi: 10.1186/1471-2164-11-354.

33.

PASS: a program to align short sequences.

Campagna D, Albiero A, Bilardi A, Caniato E, Forcato C, Manavski S, Vitulo N, Valle G.

Bioinformatics. 2009 Apr 1;25(7):967-8. doi: 10.1093/bioinformatics/btp087. Epub 2009 Feb 13.

PMID:
19218350
34.

Development and validation of a gene expression oligo microarray for the gilthead sea bream (Sparus aurata).

Ferraresso S, Vitulo N, Mininni AN, Romualdi C, Cardazzo B, Negrisolo E, Reinhardt R, Canario AV, Patarnello T, Bargelloni L.

BMC Genomics. 2008 Dec 3;9:580. doi: 10.1186/1471-2164-9-580.

35.

Large-scale transposon mutagenesis of Photobacterium profundum SS9 reveals new genetic loci important for growth at low temperature and high pressure.

Lauro FM, Tran K, Vezzi A, Vitulo N, Valle G, Bartlett DH.

J Bacteriol. 2008 Mar;190(5):1699-709. Epub 2007 Dec 21.

36.

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.

Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyère C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pè ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quétier F, Wincker P; French-Italian Public Consortium for Grapevine Genome Characterization.

Nature. 2007 Sep 27;449(7161):463-7. Epub 2007 Aug 26.

PMID:
17721507
37.

A global gene evolution analysis on Vibrionaceae family using phylogenetic profile.

Vitulo N, Vezzi A, Romualdi C, Campanaro S, Valle G.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S23.

38.

Characterization and evolution of the cell cycle-associated mob domain-containing proteins in eukaryotes.

Vitulo N, Vezzi A, Galla G, Citterio S, Marino G, Ruperti B, Zermiani M, Albertini E, Valle G, Barcaccia G.

Evol Bioinform Online. 2007 Aug 8;3:121-58.

39.

Piezophilic adaptation: a genomic point of view.

Simonato F, Campanaro S, Lauro FM, Vezzi A, D'Angelo M, Vitulo N, Valle G, Bartlett DH.

J Biotechnol. 2006 Oct 20;126(1):11-25. Epub 2006 Jun 14. Review.

PMID:
16780980
40.

Laterally transferred elements and high pressure adaptation in Photobacterium profundum strains.

Campanaro S, Vezzi A, Vitulo N, Lauro FM, D'Angelo M, Simonato F, Cestaro A, Malacrida G, Bertoloni G, Valle G, Bartlett DH.

BMC Genomics. 2005 Sep 14;6:122.

41.

A leukemia-enriched cDNA microarray platform identifies new transcripts with relevance to the biology of pediatric acute lymphoblastic leukemia.

De Pittà C, Tombolan L, Campo Dell'Orto M, Accordi B, te Kronnie G, Romualdi C, Vitulo N, Basso G, Lanfranchi G.

Haematologica. 2005 Jul;90(7):890-8.

42.

MIDAW: a web tool for statistical analysis of microarray data.

Romualdi C, Vitulo N, Del Favero M, Lanfranchi G.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W644-9.

43.

Life at depth: Photobacterium profundum genome sequence and expression analysis.

Vezzi A, Campanaro S, D'Angelo M, Simonato F, Vitulo N, Lauro FM, Cestaro A, Malacrida G, Simionati B, Cannata N, Romualdi C, Bartlett DH, Valle G.

Science. 2005 Mar 4;307(5714):1459-61.

44.

RAP: a new computer program for de novo identification of repeated sequences in whole genomes.

Campagna D, Romualdi C, Vitulo N, Del Favero M, Lexa M, Cannata N, Valle G.

Bioinformatics. 2005 Mar 1;21(5):582-8. Epub 2004 Sep 16.

PMID:
15374857

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