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Items: 10

1.

Exome-Based Rare-Variant Analyses in CKD.

Cameron-Christie S, Wolock CJ, Groopman E, Petrovski S, Kamalakaran S, Povysil G, Vitsios D, Zhang M, Fleckner J, March RE, Gelfman S, Marasa M, Li Y, Sanna-Cherchi S, Kiryluk K, Allen AS, Fellström BC, Haefliger C, Platt A, Goldstein DB, Gharavi AG.

J Am Soc Nephrol. 2019 Jun;30(6):1109-1122. doi: 10.1681/ASN.2018090909. Epub 2019 May 13.

PMID:
31085678
2.

A programmed wave of uridylation-primed mRNA degradation is essential for meiotic progression and mammalian spermatogenesis.

Morgan M, Kabayama Y, Much C, Ivanova I, Di Giacomo M, Auchynnikava T, Monahan JM, Vitsios DM, Vasiliauskaitė L, Comazzetto S, Rappsilber J, Allshire RC, Porse BT, Enright AJ, O'Carroll D.

Cell Res. 2019 Mar;29(3):221-232. doi: 10.1038/s41422-018-0128-1. Epub 2019 Jan 7.

3.

RNA-sequencing analysis of umbilical cord plasma microRNAs from healthy newborns.

Brennan GP, Vitsios DM, Casey S, Looney AM, Hallberg B, Henshall DC, Boylan GB, Murray DM, Mooney C.

PLoS One. 2018 Dec 3;13(12):e0207952. doi: 10.1371/journal.pone.0207952. eCollection 2018.

4.

In situ functional dissection of RNA cis-regulatory elements by multiplex CRISPR-Cas9 genome engineering.

Wu Q, Ferry QRV, Baeumler TA, Michaels YS, Vitsios DM, Habib O, Arnold R, Jiang X, Maio S, Steinkraus BR, Tapia M, Piazza P, Xu N, Holländer GA, Milne TA, Kim JS, Enright AJ, Bassett AR, Fulga TA.

Nat Commun. 2017 Dec 13;8(1):2109. doi: 10.1038/s41467-017-00686-2.

5.

Mirnovo: genome-free prediction of microRNAs from small RNA sequencing data and single-cells using decision forests.

Vitsios DM, Kentepozidou E, Quintais L, Benito-Gutiérrez E, van Dongen S, Davis MP, Enright AJ.

Nucleic Acids Res. 2017 Dec 1;45(21):e177. doi: 10.1093/nar/gkx836.

6.

mRNA 3' uridylation and poly(A) tail length sculpt the mammalian maternal transcriptome.

Morgan M, Much C, DiGiacomo M, Azzi C, Ivanova I, Vitsios DM, Pistolic J, Collier P, Moreira PN, Benes V, Enright AJ, O'Carroll D.

Nature. 2017 Aug 17;548(7667):347-351. doi: 10.1038/nature23318. Epub 2017 Aug 9.

7.

A MILI-independent piRNA biogenesis pathway empowers partial germline reprogramming.

Vasiliauskaitė L, Vitsios D, Berrens RV, Carrieri C, Reik W, Enright AJ, O'Carroll D.

Nat Struct Mol Biol. 2017 Jul;24(7):604-606. doi: 10.1038/nsmb.3413. Epub 2017 May 22.

8.

BioPAXViz: a cytoscape application for the visual exploration of metabolic pathway evolution.

Psomopoulos FE, Vitsios DM, Baichoo S, Ouzounis CA.

Bioinformatics. 2017 May 1;33(9):1418-1420. doi: 10.1093/bioinformatics/btw813.

PMID:
28453679
9.

Large-scale analysis of microRNA expression, epi-transcriptomic features and biogenesis.

Vitsios DM, Davis MP, van Dongen S, Enright AJ.

Nucleic Acids Res. 2017 Feb 17;45(3):1079-1090. doi: 10.1093/nar/gkw1031.

10.

Chimira: analysis of small RNA sequencing data and microRNA modifications.

Vitsios DM, Enright AJ.

Bioinformatics. 2015 Oct 15;31(20):3365-7. doi: 10.1093/bioinformatics/btv380. Epub 2015 Jun 20.

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