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Items: 43

1.

Preliminary insights into the genetics of bank vole tolerance to Puumala hantavirus in Sweden.

Rohfritsch A, Galan M, Gautier M, Gharbi K, Olsson G, Gschloessl B, Zeimes C, VanWambeke S, Vitalis R, Charbonnel N.

Ecol Evol. 2018 Oct 26;8(22):11273-11292. doi: 10.1002/ece3.4603. eCollection 2018 Nov.

2.

Measuring Genetic Differentiation from Pool-seq Data.

Hivert V, Leblois R, Petit EJ, Gautier M, Vitalis R.

Genetics. 2018 Sep;210(1):315-330. doi: 10.1534/genetics.118.300900. Epub 2018 Jul 30.

3.

Identifying genomic hotspots of differentiation and candidate genes involved in the adaptive divergence of pea aphid host races.

Nouhaud P, Gautier M, Gouin A, Jaquiéry J, Peccoud J, Legeai F, Mieuzet L, Smadja CM, Lemaitre C, Vitalis R, Simon JC.

Mol Ecol. 2018 Jul 16. doi: 10.1111/mec.14799. [Epub ahead of print]

PMID:
30010213
4.

Inferring sex-specific demographic history from SNP data.

Clemente F, Gautier M, Vitalis R.

PLoS Genet. 2018 Jan 31;14(1):e1007191. doi: 10.1371/journal.pgen.1007191. eCollection 2018 Jan.

5.

Author Correction: Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time.

Frachon L, Libourel C, Villoutreix R, Carrère S, Glorieux C, Huard-Chauveau C, Navascués M, Gay L, Vitalis R, Baron E, Amsellem L, Bouchez O, Vidal M, Le Corre V, Roby D, Bergelson J, Roux F.

Nat Ecol Evol. 2018 Jan;2(1):194. doi: 10.1038/s41559-017-0405-2.

PMID:
29208992
6.

Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time.

Frachon L, Libourel C, Villoutreix R, Carrère S, Glorieux C, Huard-Chauveau C, Navascués M, Gay L, Vitalis R, Baron E, Amsellem L, Bouchez O, Vidal M, Le Corre V, Roby D, Bergelson J, Roux F.

Nat Ecol Evol. 2017 Oct;1(10):1551-1561. doi: 10.1038/s41559-017-0297-1. Epub 2017 Sep 4. Erratum in: Nat Ecol Evol. 2017 Dec 5;:.

PMID:
29185515
7.

Deciphering the demographic history of allochronic differentiation in the pine processionary moth Thaumetopoea pityocampa.

Leblois R, Gautier M, Rohfritsch A, Foucaud J, Burban C, Galan M, Loiseau A, Sauné L, Branco M, Gharbi K, Vitalis R, Kerdelhué C.

Mol Ecol. 2018 Jan;27(1):264-278. doi: 10.1111/mec.14411. Epub 2017 Nov 29.

8.

Microevolution of bank voles (Myodes glareolus) at neutral and immune-related genes during multiannual dynamic cycles: Consequences for Puumala hantavirus epidemiology.

Dubois A, Galan M, Cosson JF, Gauffre B, Henttonen H, Niemimaa J, Razzauti M, Voutilainen L, Vitalis R, Guivier E, Charbonnel N.

Infect Genet Evol. 2017 Apr;49:318-329. doi: 10.1016/j.meegid.2016.12.007. Epub 2016 Dec 9.

PMID:
27956196
9.

rehh 2.0: a reimplementation of the R package rehh to detect positive selection from haplotype structure.

Gautier M, Klassmann A, Vitalis R.

Mol Ecol Resour. 2017 Jan;17(1):78-90. doi: 10.1111/1755-0998.12634. Epub 2016 Nov 28.

PMID:
27863062
10.

Maximum-likelihood inference of population size contractions from microsatellite data.

Leblois R, Pudlo P, Néron J, Bertaux F, Reddy Beeravolu C, Vitalis R, Rousset F.

Mol Biol Evol. 2014 Oct;31(10):2805-23. doi: 10.1093/molbev/msu212. Epub 2014 Jul 11.

PMID:
25016583
11.

Detecting and measuring selection from gene frequency data.

Vitalis R, Gautier M, Dawson KJ, Beaumont MA.

Genetics. 2014 Mar;196(3):799-817. doi: 10.1534/genetics.113.152991. Epub 2013 Dec 20.

12.

When history repeats itself: exploring the genetic architecture of host-plant adaptation in two closely related lepidopteran species.

Alexandre H, Ponsard S, Bourguet D, Vitalis R, Audiot P, Cros-Arteil S, Streiff R.

PLoS One. 2013 Jul 12;8(7):e69211. doi: 10.1371/journal.pone.0069211. Print 2013.

13.

The joint evolution of dispersal and dormancy in a metapopulation with local extinctions and kin competition.

Vitalis R, Rousset F, Kobayashi Y, Olivieri I, Gandon S.

Evolution. 2013 Jun;67(6):1676-91. doi: 10.1111/evo.12069. Epub 2013 Feb 22.

PMID:
23730761
14.

Positive selection of protective variants for type 2 diabetes from the Neolithic onward: a case study in Central Asia.

Ségurel L, Austerlitz F, Toupance B, Gautier M, Kelley JL, Pasquet P, Lonjou C, Georges M, Voisin S, Cruaud C, Couloux A, Hegay T, Aldashev A, Vitalis R, Heyer E.

Eur J Hum Genet. 2013 Oct;21(10):1146-51. doi: 10.1038/ejhg.2012.295. Epub 2013 Jan 23.

15.

Inferring population histories using genome-wide allele frequency data.

Gautier M, Vitalis R.

Mol Biol Evol. 2013 Mar;30(3):654-68. doi: 10.1093/molbev/mss257. Epub 2012 Nov 15.

PMID:
23155004
16.

Genome scans reveal candidate regions involved in the adaptation to host plant in the pea aphid complex.

Jaquiéry J, Stoeckel S, Nouhaud P, Mieuzet L, Mahéo F, Legeai F, Bernard N, Bonvoisin A, Vitalis R, Simon JC.

Mol Ecol. 2012 Nov;21(21):5251-64. doi: 10.1111/mec.12048. Epub 2012 Sep 27.

PMID:
23017212
17.

Large-scale candidate gene scan reveals the role of chemoreceptor genes in host plant specialization and speciation in the pea aphid.

Smadja CM, Canbäck B, Vitalis R, Gautier M, Ferrari J, Zhou JJ, Butlin RK.

Evolution. 2012 Sep;66(9):2723-38. doi: 10.1111/j.1558-5646.2012.01612.x. Epub 2012 Apr 12.

PMID:
22946799
18.

DETSEL: an R-package to detect marker loci responding to selection.

Vitalis R.

Methods Mol Biol. 2012;888:277-93. doi: 10.1007/978-1-61779-870-2_16.

PMID:
22665287
19.

rehh: an R package to detect footprints of selection in genome-wide SNP data from haplotype structure.

Gautier M, Vitalis R.

Bioinformatics. 2012 Apr 15;28(8):1176-7. doi: 10.1093/bioinformatics/bts115. Epub 2012 Mar 7.

PMID:
22402612
20.

Inferring population decline and expansion from microsatellite data: a simulation-based evaluation of the Msvar method.

Girod C, Vitalis R, Leblois R, Fréville H.

Genetics. 2011 May;188(1):165-79. doi: 10.1534/genetics.110.121764. Epub 2011 Mar 8.

21.

Scanning the European corn borer (Ostrinia spp.) genome for adaptive divergence between host-affiliated sibling species.

Midamegbe A, Vitalis R, Malausa T, Delava E, Cros-Arteil S, Streiff R.

Mol Ecol. 2011 Apr;20(7):1414-30. doi: 10.1111/j.1365-294X.2011.05035.x. Epub 2011 Mar 7.

PMID:
21375617
22.

Inbreeding depression is purged in the invasive insect Harmonia axyridis.

Facon B, Hufbauer RA, Tayeh A, Loiseau A, Lombaert E, Vitalis R, Guillemaud T, Lundgren JG, Estoup A.

Curr Biol. 2011 Mar 8;21(5):424-7. doi: 10.1016/j.cub.2011.01.068. Epub 2011 Feb 17.

23.

Chromosomal inversions, natural selection and adaptation in the malaria vector Anopheles funestus.

Ayala D, Fontaine MC, Cohuet A, Fontenille D, Vitalis R, Simard F.

Mol Biol Evol. 2011 Jan;28(1):745-58. doi: 10.1093/molbev/msq248. Epub 2010 Sep 13.

24.

In the heartland of Eurasia: the multilocus genetic landscape of Central Asian populations.

Martínez-Cruz B, Vitalis R, Ségurel L, Austerlitz F, Georges M, Théry S, Quintana-Murci L, Hegay T, Aldashev A, Nasyrova F, Heyer E.

Eur J Hum Genet. 2011 Feb;19(2):216-23. doi: 10.1038/ejhg.2010.153. Epub 2010 Sep 8.

25.

Population differentiation of sessile oak at the altitudinal front of migration in the French Pyrenees.

Alberto F, Niort J, Derory J, Lepais O, Vitalis R, Galop D, Kremer A.

Mol Ecol. 2010 Jul;19(13):2626-39. doi: 10.1111/j.1365-294X.2010.04631.x. Epub 2010 Jun 17.

PMID:
20561196
26.

Limited dispersal in mobile hunter-gatherer Baka Pygmies.

Verdu P, Leblois R, Froment A, Théry S, Bahuchet S, Rousset F, Heyer E, Vitalis R.

Biol Lett. 2010 Dec 23;6(6):858-61. doi: 10.1098/rsbl.2010.0192. Epub 2010 Apr 28.

27.

Evolution of flowering time in experimental wheat populations: a comprehensive approach to detect genetic signatures of natural selection.

Rhoné B, Vitalis R, Goldringer I, Bonnin I.

Evolution. 2010 Jul;64(7):2110-25. doi: 10.1111/j.1558-5646.2010.00970.x. Epub 2010 Feb 9.

PMID:
20148950
28.

In defence of model-based inference in phylogeography.

Beaumont MA, Nielsen R, Robert C, Hey J, Gaggiotti O, Knowles L, Estoup A, Panchal M, Corander J, Hickerson M, Sisson SA, Fagundes N, Chikhi L, Beerli P, Vitalis R, Cornuet JM, Huelsenbeck J, Foll M, Yang Z, Rousset F, Balding D, Excoffier L.

Mol Ecol. 2010 Feb;19(3):436-446. doi: 10.1111/j.1365-294X.2009.04515.x. Epub 2010 Jan 11.

29.

Frequency of the AGT Pro11Leu polymorphism in humans: Does diet matter?

Ségurel L, Lafosse S, Heyer E, Vitalis R.

Ann Hum Genet. 2010 Jan;74(1):57-64. doi: 10.1111/j.1469-1809.2009.00549.x.

30.

Quantifying male-biased dispersal among social groups in the collared peccary (Pecari tajacu) using analyses based on mtDNA variation.

Cooper JD, Vitalis R, Waser PM, Gopurenko D, Hellgren EC, Gabor TM, DeWoody JA.

Heredity (Edinb). 2010 Jan;104(1):79-87. doi: 10.1038/hdy.2009.102.

31.

Genomic pattern of adaptive divergence in Arabidopsis halleri, a model species for tolerance to heavy metal.

Meyer CL, Vitalis R, Saumitou-Laprade P, Castric V.

Mol Ecol. 2009 May;18(9):2050-62.

PMID:
19434814
32.

Origins and genetic diversity of pygmy hunter-gatherers from Western Central Africa.

Verdu P, Austerlitz F, Estoup A, Vitalis R, Georges M, Théry S, Froment A, Le Bomin S, Gessain A, Hombert JM, Van der Veen L, Quintana-Murci L, Bahuchet S, Heyer E.

Curr Biol. 2009 Feb 24;19(4):312-8. doi: 10.1016/j.cub.2008.12.049. Epub 2009 Feb 5.

33.

Sex-specific genetic structure and social organization in Central Asia: insights from a multi-locus study.

Ségurel L, Martínez-Cruz B, Quintana-Murci L, Balaresque P, Georges M, Hegay T, Aldashev A, Nasyrova F, Jobling MA, Heyer E, Vitalis R.

PLoS Genet. 2008 Sep 26;4(9):e1000200. doi: 10.1371/journal.pgen.1000200.

34.

The evolution of dispersal in a Levins' type metapopulation model.

Jansen VA, Vitalis R.

Evolution. 2007 Oct;61(10):2386-97. Epub 2007 Aug 21.

PMID:
17714501
35.

When genes go to sleep: the population genetic consequences of seed dormancy and monocarpic perenniality.

Vitalis R, Glémin S, Olivieri I.

Am Nat. 2004 Feb;163(2):295-311. Epub 2004 Feb 13.

PMID:
14970929
36.

DetSel 1.0: a computer program to detect markers responding to selection.

Vitalis R, Dawson K, Boursot P, Belkhir K.

J Hered. 2003 Sep-Oct;94(5):429-31.

PMID:
14557398
37.

Multilocus genetic structure at contrasted spatial scales of the endangered water fern Marsilea strigosa Willd. (Marsileaceae, Pteridophyta).

Vitalis R, Riba M, Colas B, Grillas P, Olivieri I.

Am J Bot. 2002 Jul;89(7):1142-55. doi: 10.3732/ajb.89.7.1142.

38.
39.

Interpretation of variation across marker loci as evidence of selection.

Vitalis R, Dawson K, Boursot P.

Genetics. 2001 Aug;158(4):1811-23.

40.
41.
42.

Isolation and characterization of microsatellites in the endemic species Centaurea corymbosa Pourret (Asteraceae) and other related species.

Fréville H, Imbert E, Justy F, Vitalis R, Olivieri I.

Mol Ecol. 2000 Oct;9(10):1671-2. No abstract available.

PMID:
11050567
43.

Relationships between transposable elements based upon the integrase-transposase domains: is there a common ancestor?

Capy P, Vitalis R, Langin T, Higuet D, Bazin C.

J Mol Evol. 1996 Mar;42(3):359-68.

PMID:
8661997

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