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Items: 1 to 50 of 57

1.

A comparison of collision cross section values obtained via travelling wave ion mobility-mass spectrometry and ultra high performance liquid chromatography-ion mobility-mass spectrometry: Application to the characterisation of metabolites in rat urine.

Nye LC, Williams JP, Munjoma NC, Letertre MPM, Coen M, Bouwmeester R, Martens L, Swann JR, Nicholson JK, Plumb RS, McCullagh M, Gethings LA, Lai S, Langridge JI, Vissers JPC, Wilson ID.

J Chromatogr A. 2019 Sep 27;1602:386-396. doi: 10.1016/j.chroma.2019.06.056. Epub 2019 Jun 27.

PMID:
31285057
2.

Expanding the Use of Spectral Libraries in Proteomics.

Deutsch EW, Perez-Riverol Y, Chalkley RJ, Wilhelm M, Tate S, Sachsenberg T, Walzer M, Käll L, Delanghe B, Böcker S, Schymanski EL, Wilmes P, Dorfer V, Kuster B, Volders PJ, Jehmlich N, Vissers JPC, Wolan DW, Wang AY, Mendoza L, Shofstahl J, Dowsey AW, Griss J, Salek RM, Neumann S, Binz PA, Lam H, Vizcaíno JA, Bandeira N, Röst H.

J Proteome Res. 2018 Dec 7;17(12):4051-4060. doi: 10.1021/acs.jproteome.8b00485. Epub 2018 Oct 11.

3.

Specificity of the osmotic stress response in Candida albicans highlighted by quantitative proteomics.

Jacobsen MD, Beynon RJ, Gethings LA, Claydon AJ, Langridge JI, Vissers JPC, Brown AJP, Hammond DE.

Sci Rep. 2018 Sep 27;8(1):14492. doi: 10.1038/s41598-018-32792-6.

4.

Excessive dietary lipid intake provokes an acquired form of lysosomal lipid storage disease in the kidney.

Rampanelli E, Ochodnicky P, Vissers JP, Butter LM, Claessen N, Calcagni A, Kors L, Gethings LA, Bakker SJ, de Borst MH, Navis GJ, Liebisch G, Speijer D, van den Bergh Weerman MA, Jung B, Aten J, Steenbergen E, Schmitz G, Ballabio A, Florquin S, Aerts JM, Leemans JC.

J Pathol. 2018 Dec;246(4):470-484. doi: 10.1002/path.5150. Epub 2018 Nov 5.

PMID:
30073645
5.

BASIS: High-performance bioinformatics platform for processing of large-scale mass spectrometry imaging data in chemically augmented histology.

Veselkov K, Sleeman J, Claude E, Vissers JPC, Galea D, Mroz A, Laponogov I, Towers M, Tonge R, Mirnezami R, Takats Z, Nicholson JK, Langridge JI.

Sci Rep. 2018 Mar 6;8(1):4053. doi: 10.1038/s41598-018-22499-z.

6.

Determination of Protein Haptenation by Chemical Sensitizers Within the Complexity of the Human Skin Proteome.

Parkinson E, Aleksic M, Cubberley R, Kaur-Atwal G, Vissers JPC, Skipp P.

Toxicol Sci. 2018 Apr 1;162(2):429-438. doi: 10.1093/toxsci/kfx265.

7.

Scanning Quadrupole Data-Independent Acquisition, Part B: Application to the Analysis of the Calcineurin-Interacting Proteins during Treatment of Aspergillus fumigatus with Azole and Echinocandin Antifungal Drugs.

Juvvadi PR, Moseley MA, Hughes CJ, Soderblom EJ, Lennon S, Perkins SR, Thompson JW, Geromanos SJ, Wildgoose J, Richardson K, Langridge JI, Vissers JPC, Steinbach WJ.

J Proteome Res. 2018 Feb 2;17(2):780-793. doi: 10.1021/acs.jproteome.7b00499. Epub 2017 Dec 29.

8.

Scanning Quadrupole Data-Independent Acquisition, Part A: Qualitative and Quantitative Characterization.

Moseley MA, Hughes CJ, Juvvadi PR, Soderblom EJ, Lennon S, Perkins SR, Thompson JW, Steinbach WJ, Geromanos SJ, Wildgoose J, Langridge JI, Richardson K, Vissers JPC.

J Proteome Res. 2018 Feb 2;17(2):770-779. doi: 10.1021/acs.jproteome.7b00464. Epub 2017 Dec 29.

PMID:
28901143
9.

Lipid profiling of complex biological mixtures by liquid chromatography/mass spectrometry using a novel scanning quadrupole data-independent acquisition strategy.

Gethings LA, Richardson K, Wildgoose J, Lennon S, Jarvis S, Bevan CL, Vissers JPC, Langridge JI.

Rapid Commun Mass Spectrom. 2017 Oct 15;31(19):1599-1606. doi: 10.1002/rcm.7941.

PMID:
28703389
10.

Quantitative Proteome Analysis of Mouse Liver Lysosomes Provides Evidence for Mannose 6-phosphate-independent Targeting Mechanisms of Acid Hydrolases in Mucolipidosis II.

Markmann S, Krambeck S, Hughes CJ, Mirzaian M, Aerts JM, Saftig P, Schweizer M, Vissers JP, Braulke T, Damme M.

Mol Cell Proteomics. 2017 Mar;16(3):438-450. doi: 10.1074/mcp.M116.063636. Epub 2017 Jan 6.

11.

Elevation of glycoprotein nonmetastatic melanoma protein B in type 1 Gaucher disease patients and mouse models.

Kramer G, Wegdam W, Donker-Koopman W, Ottenhoff R, Gaspar P, Verhoek M, Nelson J, Gabriel T, Kallemeijn W, Boot RG, Laman JD, Vissers JP, Cox T, Pavlova E, Moran MT, Aerts JM, van Eijk M.

FEBS Open Bio. 2016 Jul 30;6(9):902-13. doi: 10.1002/2211-5463.12078. eCollection 2016 Sep.

12.

Multi-mode acquisition (MMA): An MS/MS acquisition strategy for maximizing selectivity, specificity and sensitivity of DIA product ion spectra.

Williams BJ, Ciavarini SJ, Devlin C, Cohn SM, Xie R, Vissers JP, Martin LB, Caswell A, Langridge JI, Geromanos SJ.

Proteomics. 2016 Aug;16(15-16):2284-301. doi: 10.1002/pmic.201500492.

PMID:
27296928
13.

Advances in quadrupole and time-of-flight mass spectrometry for peptide MRM based translational research analysis.

Mbasu RJ, Heaney LM, Molloy BJ, Hughes CJ, Ng LL, Vissers JP, Langridge JI, Jones DJ.

Proteomics. 2016 Aug;16(15-16):2206-20. doi: 10.1002/pmic.201500500. Epub 2016 Jul 28.

PMID:
27214876
14.

Accuracy and Reproducibility in Quantification of Plasma Protein Concentrations by Mass Spectrometry without the Use of Isotopic Standards.

Kramer G, Woolerton Y, van Straalen JP, Vissers JP, Dekker N, Langridge JI, Beynon RJ, Speijer D, Sturk A, Aerts JM.

PLoS One. 2015 Oct 16;10(10):e0140097. doi: 10.1371/journal.pone.0140097. eCollection 2015.

15.

Quantitative proteomics of rat and human pancreatic beta cells.

Brackeva B, Kramer G, Vissers JP, Martens GA.

Data Brief. 2015 Mar 10;3:234-9. doi: 10.1016/j.dib.2015.02.019. eCollection 2015 Jun.

16.

Peptide profiling of Internet-obtained Cerebrolysin using high performance liquid chromatography - electrospray ionization ion trap and ultra high performance liquid chromatography - ion mobility - quadrupole time of flight mass spectrometry.

Gevaert B, D'Hondt M, Bracke N, Yao H, Wynendaele E, Vissers JP, De Cecco M, Claereboudt J, De Spiegeleer B.

Drug Test Anal. 2015 Sep;7(9):835-42. doi: 10.1002/dta.1817. Epub 2015 May 28.

PMID:
26017115
17.

Label-free LC-MSe in tissue and serum reveals protein networks underlying differences between benign and malignant serous ovarian tumors.

Wegdam W, Argmann CA, Kramer G, Vissers JP, Buist MR, Kenter GG, Aerts JM, Meijer D, Moerland PD.

PLoS One. 2014 Sep 29;9(9):e108046. doi: 10.1371/journal.pone.0108046. eCollection 2014.

18.

Label-free mass spectrometric profiling of urinary proteins and metabolites from paediatric idiopathic nephrotic syndrome.

Sedic M, Gethings LA, Vissers JP, Shockcor JP, McDonald S, Vasieva O, Lemac M, Langridge JI, Batinić D, Pavelić SK.

Biochem Biophys Res Commun. 2014 Sep 12;452(1):21-6. doi: 10.1016/j.bbrc.2014.08.016. Epub 2014 Aug 20.

PMID:
25150443
19.

Ion mobility tandem mass spectrometry enhances performance of bottom-up proteomics.

Helm D, Vissers JP, Hughes CJ, Hahne H, Ruprecht B, Pachl F, Grzyb A, Richardson K, Wildgoose J, Maier SK, Marx H, Wilhelm M, Becher I, Lemeer S, Bantscheff M, Langridge JI, Kuster B.

Mol Cell Proteomics. 2014 Dec;13(12):3709-15. doi: 10.1074/mcp.M114.041038. Epub 2014 Aug 8.

20.

Verification of a Parkinson's disease protein signature in T-lymphocytes by multiple reaction monitoring.

Alberio T, McMahon K, Cuccurullo M, Gethings LA, Lawless C, Zibetti M, Lopiano L, Vissers JP, Fasano M.

J Proteome Res. 2014 Aug 1;13(8):3554-61. doi: 10.1021/pr401142p. Epub 2014 Jul 1.

PMID:
24946097
21.

Quantitative proteomic analysis of hepatocyte-secreted extracellular vesicles reveals candidate markers for liver toxicity.

Rodríguez-Suárez E, Gonzalez E, Hughes C, Conde-Vancells J, Rudella A, Royo F, Palomo L, Elortza F, Lu SC, Mato JM, Vissers JP, Falcón-Pérez JM.

J Proteomics. 2014 May 30;103:227-40. doi: 10.1016/j.jprot.2014.04.008. Epub 2014 Apr 18.

22.

Characterisation of glycoproteins using a quadrupole time-of-flight mass spectrometer configured for electron transfer dissociation.

Williams JP, Pringle S, Richardson K, Gethings L, Vissers JP, De Cecco M, Houel S, Chakraborty AB, Yu YQ, Chen W, Brown JM.

Rapid Commun Mass Spectrom. 2013 Nov 15;27(21):2383-90. doi: 10.1002/rcm.6684.

PMID:
24097394
23.

A probabilistic framework for peptide and protein quantification from data-dependent and data-independent LC-MS proteomics experiments.

Richardson K, Denny R, Hughes C, Skilling J, Sikora J, Dadlez M, Manteca A, Jung HR, Jensen ON, Redeker V, Melki R, Langridge JI, Vissers JP.

OMICS. 2012 Sep;16(9):468-82. doi: 10.1089/omi.2012.0019. Epub 2012 Aug 7.

24.

Design and application of a data-independent precursor and product ion repository.

Thalassinos K, Vissers JP, Tenzer S, Levin Y, Thompson JW, Daniel D, Mann D, DeLong MR, Moseley MA, America AH, Ottens AK, Cavey GS, Efstathiou G, Scrivens JH, Langridge JI, Geromanos SJ.

J Am Soc Mass Spectrom. 2012 Oct;23(10):1808-20. Epub 2012 Jul 31.

PMID:
22847389
25.

Using ion purity scores for enhancing quantitative accuracy and precision in complex proteomics samples.

Geromanos SJ, Hughes C, Ciavarini S, Vissers JP, Langridge JI.

Anal Bioanal Chem. 2012 Sep;404(4):1127-39. doi: 10.1007/s00216-012-6197-y. Epub 2012 Jul 19.

PMID:
22811061
26.

Asymmetric proteome equalization of the skeletal muscle proteome using a combinatorial hexapeptide library.

Rivers J, Hughes C, McKenna T, Woolerton Y, Vissers JP, Langridge JI, Beynon RJ.

PLoS One. 2011;6(12):e28902. doi: 10.1371/journal.pone.0028902. Epub 2011 Dec 19.

27.

Qualitative and quantitative multiplexed proteomic analysis of complex yeast protein fractions that modulate the assembly of the yeast prion Sup35p.

Redeker V, Hughes C, Savistchenko J, Vissers JP, Melki R.

PLoS One. 2011;6(9):e23659. doi: 10.1371/journal.pone.0023659. Epub 2011 Sep 13.

28.

Plasma biomarker identification in S-adenosylhomocysteine hydrolase deficiency.

Sedic M, Kraljevic Pavelic S, Cindric M, Vissers JP, Peronja M, Josic D, Cuk M, Fumic K, Pavelic K, Baric I.

Electrophoresis. 2011 Aug;32(15):1970-5. doi: 10.1002/elps.201000556. Epub 2011 Jul 6.

PMID:
21732553
29.

Simulating and validating proteomics data and search results.

Geromanos SJ, Hughes C, Golick D, Ciavarini S, Gorenstein MV, Richardson K, Hoyes JB, Vissers JP, Langridge JI.

Proteomics. 2011 Mar;11(6):1189-211. doi: 10.1002/pmic.201000576. Epub 2011 Feb 7.

PMID:
21298790
30.

Protein markers for insulin-producing beta cells with higher glucose sensitivity.

Martens GA, Jiang L, Verhaeghen K, Connolly JB, Geromanos SG, Stangé G, Van Oudenhove L, Devreese B, Hellemans KH, Ling Z, Van Schravendijk C, Pipeleers DG, Vissers JP, Gorus FK.

PLoS One. 2010 Dec 6;5(12):e14214. doi: 10.1371/journal.pone.0014214.

31.

Quantitative neuroproteomics: classical and novel tools for studying neural differentiation and function.

Colucci-D'Amato L, Farina A, Vissers JP, Chambery A.

Stem Cell Rev. 2011 Mar;7(1):77-93. doi: 10.1007/s12015-010-9136-3. Review.

PMID:
20352529
32.

Towards a proteome signature for invasive ductal breast carcinoma derived from label-free nanoscale LC-MS protein expression profiling of tumorous and glandular tissue.

Röwer C, Vissers JP, Koy C, Kipping M, Hecker M, Reimer T, Gerber B, Thiesen HJ, Glocker MO.

Anal Bioanal Chem. 2009 Dec;395(8):2443-56. doi: 10.1007/s00216-009-3187-9. Epub 2009 Oct 29.

PMID:
19876624
33.

Gaucher disease: a model disorder for biomarker discovery.

Boot RG, van Breemen MJ, Wegdam W, Sprenger RR, de Jong S, Speijer D, Hollak CE, van Dussen L, Hoefsloot HC, Smilde AK, de Koster CG, Vissers JP, Aerts JM.

Expert Rev Proteomics. 2009 Aug;6(4):411-9. doi: 10.1586/epr.09.54. Review.

PMID:
19681676
34.

Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures.

Li GZ, Vissers JP, Silva JC, Golick D, Gorenstein MV, Geromanos SJ.

Proteomics. 2009 Mar;9(6):1696-719. doi: 10.1002/pmic.200800564.

PMID:
19294629
35.

The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS.

Geromanos SJ, Vissers JP, Silva JC, Dorschel CA, Li GZ, Gorenstein MV, Bateman RH, Langridge JI.

Proteomics. 2009 Mar;9(6):1683-95. doi: 10.1002/pmic.200800562.

PMID:
19294628
36.

Qualitative and quantitative proteomic profiling of cripto(-/-) embryonic stem cells by means of accurate mass LC-MS analysis.

Chambery A, Vissers JP, Langridge JI, Lonardo E, Minchiotti G, Ruvo M, Parente A.

J Proteome Res. 2009 Feb;8(2):1047-58. doi: 10.1021/pr800485c.

PMID:
19152270
37.

Proteomic profiling of proliferating and differentiated neural mes-c-myc A1 cell line from mouse embryonic mesencephalon by LC-MS.

Chambery A, Colucci-D'Amato L, Vissers JP, Scarpella S, Langridge JI, Parente A.

J Proteome Res. 2009 Jan;8(1):227-38. doi: 10.1021/pr800454n.

PMID:
19072241
38.

The use of proteome similarity for the qualitative and quantitative profiling of reperfused myocardium.

Vissers JP, Pons S, Hulin A, Tissier R, Berdeaux A, Connolly JB, Langridge JI, Geromanos SJ, Ghaleh B.

J Chromatogr B Analyt Technol Biomed Life Sci. 2009 May 1;877(13):1317-26. doi: 10.1016/j.jchromb.2008.10.024. Epub 2008 Nov 1.

39.

Nonionic detergent phase extraction for the proteomic analysis of heart membrane proteins using label-free LC-MS.

Donoghue PM, Hughes C, Vissers JP, Langridge JI, Dunn MJ.

Proteomics. 2008 Sep;8(18):3895-905. doi: 10.1002/pmic.200800116.

PMID:
18712767
40.

Biomarkers for lysosomal storage disorders: identification and application as exemplified by chitotriosidase in Gaucher disease.

Aerts JM, van Breemen MJ, Bussink AP, Ghauharali K, Sprenger R, Boot RG, Groener JE, Hollak CE, Maas M, Smit S, Hoefsloot HC, Smilde AK, Vissers JP, de Jong S, Speijer D, de Koster CG.

Acta Paediatr. 2008 Apr;97(457):7-14. doi: 10.1111/j.1651-2227.2007.00641.x. Review.

PMID:
18339181
41.

Structural characterization of PEGylated rHuG-CSF and location of PEG attachment sites.

Cindrić M, Cepo T, Galić N, Bukvić-Krajacić M, Tomczyk N, Vissers JP, Bindila L, Peter-Katalinić J.

J Pharm Biomed Anal. 2007 Jun 28;44(2):388-95. Epub 2007 Mar 4.

PMID:
17448619
42.

Analysis and quantification of diagnostic serum markers and protein signatures for Gaucher disease.

Vissers JP, Langridge JI, Aerts JM.

Mol Cell Proteomics. 2007 May;6(5):755-66. Epub 2007 Feb 9.

43.

Alignment and statistical difference analysis of complex peptide data sets generated by multidimensional LC-MS.

America AH, Cordewener JH, van Geffen MH, Lommen A, Vissers JP, Bino RJ, Hall RD.

Proteomics. 2006 Jan;6(2):641-53.

PMID:
16372275
44.

Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition.

Silva JC, Gorenstein MV, Li GZ, Vissers JP, Geromanos SJ.

Mol Cell Proteomics. 2006 Jan;5(1):144-56. Epub 2005 Oct 11.

45.

A proteome approach defines protective functions of tobacco leaf trichomes.

Amme S, Rutten T, Melzer M, Sonsmann G, Vissers JP, Schlesier B, Mock HP.

Proteomics. 2005 Jul;5(10):2508-18.

PMID:
15984042
46.

Survey of bacterial proteins released in cheese: a proteomic approach.

Gagnaire V, Piot M, Camier B, Vissers JP, Jan G, Léonil J.

Int J Food Microbiol. 2004 Jul 15;94(2):185-201.

PMID:
15193805
48.

Mass spectrometry proteomic analysis of stress adaptation reveals both common and distinct response pathways in Propionibacterium freudenreichii.

Leverrier P, Vissers JP, Rouault A, Boyaval P, Jan G.

Arch Microbiol. 2004 Mar;181(3):215-30. Epub 2004 Jan 17.

PMID:
14730419
49.

Surface and wastewater quality monitoring: combination of liquid chromatography with (geno)toxicity detection, diode array detection and tandem mass spectrometry for identification of pollutants.

Bobeldijk I, Stoks PG, Vissers JP, Emke E, van Leerdam JA, Muilwijk B, Berbee R, Noij TH.

J Chromatogr A. 2002 Sep 13;970(1-2):167-81.

PMID:
12350091
50.

A novel precursor ion discovery method on a hybrid quadrupole orthogonal acceleration time-of-flight (Q-TOF) mass spectrometer for studying protein phosphorylation.

Bateman RH, Carruthers R, Hoyes JB, Jones C, Langridge JI, Millar A, Vissers JP.

J Am Soc Mass Spectrom. 2002 Jul;13(7):792-803.

PMID:
12148804

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