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Items: 44

1.

A Microbe Associated with Sleep Revealed by a Novel Systems Genetic Analysis of the Microbiome in Collaborative Cross Mice.

Bubier JA, Philip VM, Quince C, Campbell J, Zhou Y, Vishnivetskaya T, Duvvuru S, Blair RH, Ndukum J, Donohue KD, Foster CM, Mellert DJ, Weinstock G, Culiat CT, O'Hara BF, Palumbo AV, Podar M, Chesler EJ.

Genetics. 2020 Mar;214(3):719-733. doi: 10.1534/genetics.119.303013. Epub 2020 Jan 2.

2.

Metagenome-Assembled Genome of USCα AHI, a Potential High-Affinity Methanotroph from Axel Heiberg Island, Canadian High Arctic.

Rusley C, Onstott TC, Vishnivetskaya TA, Layton A, Chauhan A, Pfiffner SM, Whyte LG, Lau MCY.

Microbiol Resour Announc. 2019 Nov 14;8(46). pii: e01178-19. doi: 10.1128/MRA.01178-19.

3.

Metagenomes from Late Pleistocene Ice Complex Sediments of the Siberian Arctic.

Vishnivetskaya T, Spirina E, Shmakova L, Tutukina M, Li Z, Wu X, Rivkina E.

Microbiol Resour Announc. 2019 Oct 24;8(43). pii: e01010-19. doi: 10.1128/MRA.01010-19.

4.

Draft Genome Sequence of Microbacterium sp. Gd 4-13, Isolated from Gydanskiy Peninsula Permafrost Sediments of Marine Origin.

Spirina EV, Kuleshov KV, Yunusova AK, Vishnivetskaya TA, Rivkina EM.

Microbiol Resour Announc. 2019 Oct 3;8(40). pii: e00889-19. doi: 10.1128/MRA.00889-19.

5.

Predominance of Anaerobic, Spore-Forming Bacteria in Metabolically Active Microbial Communities from Ancient Siberian Permafrost.

Liang R, Lau M, Vishnivetskaya T, Lloyd KG, Wang W, Wiggins J, Miller J, Pfiffner S, Rivkina EM, Onstott TC.

Appl Environ Microbiol. 2019 Jul 18;85(15). pii: e00560-19. doi: 10.1128/AEM.00560-19. Print 2019 Aug 1.

6.

Viable Nematodes from Late Pleistocene Permafrost of the Kolyma River Lowland.

Shatilovich AV, Tchesunov AV, Neretina TV, Grabarnik IP, Gubin SV, Vishnivetskaya TA, Onstott TC, Rivkina EM.

Dokl Biol Sci. 2018 May;480(1):100-102. doi: 10.1134/S0012496618030079. Epub 2018 Jul 16.

PMID:
30009350
7.

Methanogens in the Antarctic Dry Valley permafrost.

Vishnivetskaya TA, Buongiorno J, Bird J, Krivushin K, Spirina EV, Oshurkova V, Shcherbakova VA, Wilson G, Lloyd KG, Rivkina EM.

FEMS Microbiol Ecol. 2018 Aug 1;94(8). doi: 10.1093/femsec/fiy109.

PMID:
29878114
8.

Microbial community structure with trends in methylation gene diversity and abundance in mercury-contaminated rice paddy soils in Guizhou, China.

Vishnivetskaya TA, Hu H, Van Nostrand JD, Wymore AM, Xu X, Qiu G, Feng X, Zhou J, Brown SD, Brandt CC, Podar M, Gu B, Elias DA.

Environ Sci Process Impacts. 2018 Apr 25;20(4):673-685. doi: 10.1039/c7em00558j.

PMID:
29504614
9.

Draft Genome Sequence of Antarctic Methanogen Enriched from Dry Valley Permafrost.

Buongiorno J, Bird JT, Krivushin K, Oshurkova V, Shcherbakova V, Rivkina EM, Lloyd KG, Vishnivetskaya TA.

Genome Announc. 2016 Dec 8;4(6). pii: e01362-16. doi: 10.1128/genomeA.01362-16.

10.

Atmospheric CH4 oxidation by Arctic permafrost and mineral cryosols as a function of water saturation and temperature.

Stackhouse B, Lau MC, Vishnivetskaya T, Burton N, Wang R, Southworth A, Whyte L, Onstott TC.

Geobiology. 2017 Jan;15(1):94-111. doi: 10.1111/gbi.12193. Epub 2016 Jul 29.

PMID:
27474434
11.

An active atmospheric methane sink in high Arctic mineral cryosols.

Lau MC, Stackhouse BT, Layton AC, Chauhan A, Vishnivetskaya TA, Chourey K, Ronholm J, Mykytczuk NC, Bennett PC, Lamarche-Gagnon G, Burton N, Pollard WH, Omelon CR, Medvigy DM, Hettich RL, Pfiffner SM, Whyte LG, Onstott TC.

ISME J. 2015 Aug;9(8):1904. doi: 10.1038/ismej.2015.112. No abstract available.

12.

Changes in northern Gulf of Mexico sediment bacterial and archaeal communities exposed to hypoxia.

Devereux R, Mosher JJ, Vishnivetskaya TA, Brown SD, Beddick DL Jr, Yates DF, Palumbo AV.

Geobiology. 2015 Sep;13(5):478-93. doi: 10.1111/gbi.12142. Epub 2015 May 5.

PMID:
25939270
13.

An active atmospheric methane sink in high Arctic mineral cryosols.

Lau MC, Stackhouse BT, Layton AC, Chauhan A, Vishnivetskaya TA, Chourey K, Ronholm J, Mykytczuk NC, Bennett PC, Lamarche-Gagnon G, Burton N, Pollard WH, Omelon CR, Medvigy DM, Hettich RL, Pfiffner SM, Whyte LG, Onstott TC.

ISME J. 2015 Aug;9(8):1880-91. doi: 10.1038/ismej.2015.13. Epub 2015 Apr 14. Erratum in: ISME J. 2015 Aug;9(8):1904.

14.

Metagenomes from thawing low-soil-organic-carbon mineral cryosols and permafrost of the canadian high arctic.

Chauhan A, Layton AC, Vishnivetskaya TA, Williams D, Pfiffner SM, Rekepalli B, Stackhouse B, Lau MC, Phelps TJ, Mykytczuk N, Ronholm J, Whyte L, Onstott TC, Sayler GS.

Genome Announc. 2014 Nov 20;2(6). pii: e01217-14. doi: 10.1128/genomeA.01217-14.

15.

Draft genome sequences of 10 strains of the genus exiguobacterium.

Vishnivetskaya TA, Chauhan A, Layton AC, Pfiffner SM, Huntemann M, Copeland A, Chen A, Kyrpides NC, Markowitz VM, Palaniappan K, Ivanova N, Mikhailova N, Ovchinnikova G, Andersen EW, Pati A, Stamatis D, Reddy TB, Shapiro N, Nordberg HP, Cantor MN, Hua XS, Woyke T.

Genome Announc. 2014 Oct 16;2(5). pii: e01058-14. doi: 10.1128/genomeA.01058-14.

16.

Community analysis of plant biomass-degrading microorganisms from Obsidian Pool, Yellowstone National Park.

Vishnivetskaya TA, Hamilton-Brehm SD, Podar M, Mosher JJ, Palumbo AV, Phelps TJ, Keller M, Elkins JG.

Microb Ecol. 2015 Feb;69(2):333-45. doi: 10.1007/s00248-014-0500-8. Epub 2014 Oct 16.

PMID:
25319238
17.

Improved yield of high molecular weight DNA coincides with increased microbial diversity access from iron oxide cemented sub-surface clay environments.

Hurt RA Jr, Robeson MS 2nd, Shakya M, Moberly JG, Vishnivetskaya TA, Gu B, Elias DA.

PLoS One. 2014 Jul 17;9(7):e102826. doi: 10.1371/journal.pone.0102826. eCollection 2014.

18.

Diversity and genomic insights into the uncultured Chloroflexi from the human microbiota.

Campbell AG, Schwientek P, Vishnivetskaya T, Woyke T, Levy S, Beall CJ, Griffen A, Leys E, Podar M.

Environ Microbiol. 2014 Sep;16(9):2635-43. doi: 10.1111/1462-2920.12461. Epub 2014 Apr 17.

19.

Commercial DNA extraction kits impact observed microbial community composition in permafrost samples.

Vishnivetskaya TA, Layton AC, Lau MC, Chauhan A, Cheng KR, Meyers AJ, Murphy JR, Rogers AW, Saarunya GS, Williams DE, Pfiffner SM, Biggerstaff JP, Stackhouse BT, Phelps TJ, Whyte L, Sayler GS, Onstott TC.

FEMS Microbiol Ecol. 2014 Jan;87(1):217-30. doi: 10.1111/1574-6941.12219. Epub 2013 Oct 17.

20.

Environmental proteomics reveals early microbial community responses to biostimulation at a uranium- and nitrate-contaminated site.

Chourey K, Nissen S, Vishnivetskaya T, Shah M, Pfiffner S, Hettich RL, Löffler FE.

Proteomics. 2013 Oct;13(18-19):2921-30. doi: 10.1002/pmic.201300155. Epub 2013 Aug 22.

PMID:
23894087
21.

Biogeography of the ecosystems of the healthy human body.

Zhou Y, Gao H, Mihindukulasuriya KA, La Rosa PS, Wylie KM, Vishnivetskaya T, Podar M, Warner B, Tarr PI, Nelson DE, Fortenberry JD, Holland MJ, Burr SE, Shannon WD, Sodergren E, Weinstock GM.

Genome Biol. 2013 Jan 14;14(1):R1. doi: 10.1186/gb-2013-14-1-r1.

22.

Microbial communities involved in biological ammonium removal from coal combustion wastewaters.

Vishnivetskaya TA, Fisher LS, Brodie GA, Phelps TJ.

Microb Ecol. 2013 Jul;66(1):49-59. doi: 10.1007/s00248-012-0152-5. Epub 2013 Jan 13.

PMID:
23314095
23.

Anaerobic high-throughput cultivation method for isolation of thermophiles using biomass-derived substrates.

Hamilton-Brehm SD, Vishnivetskaya TA, Allman SL, Mielenz JR, Elkins JG.

Methods Mol Biol. 2012;908:153-68. doi: 10.1007/978-1-61779-956-3_15.

PMID:
22843398
24.

Host genetic and environmental effects on mouse intestinal microbiota.

Campbell JH, Foster CM, Vishnivetskaya T, Campbell AG, Yang ZK, Wymore A, Palumbo AV, Chesler EJ, Podar M.

ISME J. 2012 Nov;6(11):2033-44. doi: 10.1038/ismej.2012.54. Epub 2012 Jun 14.

25.

Microbes in thawing permafrost: the unknown variable in the climate change equation.

Graham DE, Wallenstein MD, Vishnivetskaya TA, Waldrop MP, Phelps TJ, Pfiffner SM, Onstott TC, Whyte LG, Rivkina EM, Gilichinsky DA, Elias DA, Mackelprang R, VerBerkmoes NC, Hettich RL, Wagner D, Wullschleger SD, Jansson JK.

ISME J. 2012 Apr;6(4):709-12. doi: 10.1038/ismej.2011.163. Epub 2011 Nov 17. No abstract available.

26.

Complete genome sequence of the Thermophilic Bacterium Exiguobacterium sp. AT1b.

Vishnivetskaya TA, Lucas S, Copeland A, Lapidus A, Glavina del Rio T, Dalin E, Tice H, Bruce DC, Goodwin LA, Pitluck S, Saunders E, Brettin T, Detter C, Han C, Larimer F, Land ML, Hauser LJ, Kyrpides NC, Ovchinnikova G, Kathariou S, Ramaley RF, Rodrigues DF, Hendrix C, Richardson P, Tiedje JM.

J Bacteriol. 2011 Jun;193(11):2880-1. doi: 10.1128/JB.00303-11. Epub 2011 Apr 1.

27.

Enhancement in current density and energy conversion efficiency of 3-dimensional MFC anodes using pre-enriched consortium and continuous supply of electron donors.

Borole AP, Hamilton CY, Vishnivetskaya TA.

Bioresour Technol. 2011 Apr;102(8):5098-104. doi: 10.1016/j.biortech.2011.01.045. Epub 2011 Jan 25.

PMID:
21334884
28.

Mercury and other heavy metals influence bacterial community structure in contaminated Tennessee streams.

Vishnivetskaya TA, Mosher JJ, Palumbo AV, Yang ZK, Podar M, Brown SD, Brooks SC, Gu B, Southworth GR, Drake MM, Brandt CC, Elias DA.

Appl Environ Microbiol. 2011 Jan;77(1):302-11. doi: 10.1128/AEM.01715-10. Epub 2010 Nov 5.

29.

Characterization of archaeal community in contaminated and uncontaminated surface stream sediments.

Porat I, Vishnivetskaya TA, Mosher JJ, Brandt CC, Yang ZK, Brooks SC, Liang L, Drake MM, Podar M, Brown SD, Palumbo AV.

Microb Ecol. 2010 Nov;60(4):784-95. doi: 10.1007/s00248-010-9734-2. Epub 2010 Aug 20.

30.

Microbial community changes in response to ethanol or methanol amendments for U(VI) reduction.

Vishnivetskaya TA, Brandt CC, Madden AS, Drake MM, Kostka JE, Akob DM, Küsel K, Palumbo AV.

Appl Environ Microbiol. 2010 Sep;76(17):5728-35. doi: 10.1128/AEM.00308-10. Epub 2010 Jul 2.

31.

Caldicellulosiruptor obsidiansis sp. nov., an anaerobic, extremely thermophilic, cellulolytic bacterium isolated from Obsidian Pool, Yellowstone National Park.

Hamilton-Brehm SD, Mosher JJ, Vishnivetskaya T, Podar M, Carroll S, Allman S, Phelps TJ, Keller M, Elkins JG.

Appl Environ Microbiol. 2010 Feb;76(4):1014-20. doi: 10.1128/AEM.01903-09. Epub 2009 Dec 18.

32.

Microbial communities in subpermafrost saline fracture water at the Lupin Au mine, Nunavut, Canada.

Onstott TC, McGown DJ, Bakermans C, Ruskeeniemi T, Ahonen L, Telling J, Soffientino B, Pfiffner SM, Sherwood-Lollar B, Frape S, Stotler R, Johnson EJ, Vishnivetskaya TA, Rothmel R, Pratt LM.

Microb Ecol. 2009 Nov;58(4):786-807. doi: 10.1007/s00248-009-9553-5. Epub 2009 Jul 1.

PMID:
19568805
33.

The Exiguobacterium genus: biodiversity and biogeography.

Vishnivetskaya TA, Kathariou S, Tiedje JM.

Extremophiles. 2009 May;13(3):541-55. doi: 10.1007/s00792-009-0243-5. Epub 2009 Apr 19.

PMID:
19381755
34.

Controlling accumulation of fermentation inhibitors in biorefinery recycle water using microbial fuel cells.

Borole AP, Mielenz JR, Vishnivetskaya TA, Hamilton CY.

Biotechnol Biofuels. 2009 Apr 1;2(1):7. doi: 10.1186/1754-6834-2-7.

35.

Donor-dependent extent of uranium reduction for bioremediation of contaminated sediment microcosms.

Madden AS, Palumbo AV, Ravel B, Vishnivetskaya TA, Phelps TJ, Schadt CW, Brandt CC.

J Environ Qual. 2009 Jan 13;38(1):53-60. doi: 10.2134/jeq2008.0071. Print 2009 Jan-Feb.

PMID:
19141795
36.

Microbial populations in Antarctic permafrost: biodiversity, state, age, and implication for astrobiology.

Gilichinsky DA, Wilson GS, Friedmann EI, McKay CP, Sletten RS, Rivkina EM, Vishnivetskaya TA, Erokhina LG, Ivanushkina NE, Kochkina GA, Shcherbakova VA, Soina VS, Spirina EV, Vorobyova EA, Fyodorov-Davydov DG, Hallet B, Ozerskaya SM, Sorokovikov VA, Laurinavichyus KS, Shatilovich AV, Chanton JP, Ostroumov VE, Tiedje JM.

Astrobiology. 2007 Apr;7(2):275-311.

PMID:
17480161
37.

Effect of low temperature and culture media on the growth and freeze-thawing tolerance of Exiguobacterium strains.

Vishnivetskaya TA, Siletzky R, Jefferies N, Tiedje JM, Kathariou S.

Cryobiology. 2007 Apr;54(2):234-40. Epub 2007 Feb 6.

PMID:
17382311
38.

Bacterial community in ancient Siberian permafrost as characterized by culture and culture-independent methods.

Vishnivetskaya TA, Petrova MA, Urbance J, Ponder M, Moyer CL, Gilichinsky DA, Tiedje JM.

Astrobiology. 2006 Jun;6(3):400-14.

PMID:
16805696
39.

Psychrobacter cryohalolentis sp. nov. and Psychrobacter arcticus sp. nov., isolated from Siberian permafrost.

Bakermans C, Ayala-del-Río HL, Ponder MA, Vishnivetskaya T, Gilichinsky D, Thomashow MF, Tiedje JM.

Int J Syst Evol Microbiol. 2006 Jun;56(Pt 6):1285-91.

PMID:
16738105
40.

Characterization of Exiguobacterium isolates from the Siberian permafrost. Description of Exiguobacterium sibiricum sp. nov.

Rodrigues DF, Goris J, Vishnivetskaya T, Gilichinsky D, Thomashow MF, Tiedje JM.

Extremophiles. 2006 Aug;10(4):285-94. Epub 2006 Feb 18.

PMID:
16489412
41.
42.

Calmodulin kinase II inhibition protects against structural heart disease.

Zhang R, Khoo MS, Wu Y, Yang Y, Grueter CE, Ni G, Price EE Jr, Thiel W, Guatimosim S, Song LS, Madu EC, Shah AN, Vishnivetskaya TA, Atkinson JB, Gurevich VV, Salama G, Lederer WJ, Colbran RJ, Anderson ME.

Nat Med. 2005 Apr;11(4):409-17. Epub 2005 Mar 27.

PMID:
15793582
43.

The evolution of A beta peptide burden in the APP23 transgenic mice: implications for A beta deposition in Alzheimer disease.

Kuo YM, Beach TG, Sue LI, Scott S, Layne KJ, Kokjohn TA, Kalback WM, Luehrs DC, Vishnivetskaya TA, Abramowski D, Sturchler-Pierrat C, Staufenbiel M, Weller RO, Roher AE.

Mol Med. 2001 Sep;7(9):609-18.

44.

Low-temperature recovery strategies for the isolation of bacteria from ancient permafrost sediments.

Vishnivetskaya T, Kathariou S, McGrath J, Gilichinsky D, Tiedje JM.

Extremophiles. 2000 Jun;4(3):165-73.

PMID:
10879561

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