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Items: 27

1.

Detection of new endemic focus of tick-borne encephalitis virus (TBEV), Hampshire/Dorset border, England, September 2019.

Holding M, Dowall SD, Medlock JM, Carter DP, McGinley L, Curran-French M, Pullan ST, Chamberlain J, Hansford KM, Baylis M, Vipond R, Hewson R.

Euro Surveill. 2019 Nov;24(47). doi: 10.2807/1560-7917.ES.2019.24.47.1900658.

2.

Metagenomic Nanopore Sequencing of Influenza Virus Direct from Clinical Respiratory Samples.

Lewandowski K, Xu Y, Pullan ST, Lumley SF, Foster D, Sanderson N, Vaughan A, Morgan M, Bright N, Kavanagh J, Vipond R, Carroll M, Marriott AC, Gooch KE, Andersson M, Jeffery K, Peto TEA, Crook DW, Walker AS, Matthews PC.

J Clin Microbiol. 2019 Dec 23;58(1). pii: e00963-19. doi: 10.1128/JCM.00963-19. Print 2019 Dec 23.

3.

Tick-Borne Encephalitis Virus, United Kingdom.

Holding M, Dowall SD, Medlock JM, Carter DP, Pullan ST, Lewis J, Vipond R, Rocchi MS, Baylis M, Hewson R.

Emerg Infect Dis. 2020 Jan;26(1):90-96. doi: 10.3201/eid2601.191085. Epub 2020 Jan 17.

4.

Metagenomic sequencing at the epicenter of the Nigeria 2018 Lassa fever outbreak.

Kafetzopoulou LE, Pullan ST, Lemey P, Suchard MA, Ehichioya DU, Pahlmann M, Thielebein A, Hinzmann J, Oestereich L, Wozniak DM, Efthymiadis K, Schachten D, Koenig F, Matjeschk J, Lorenzen S, Lumley S, Ighodalo Y, Adomeh DI, Olokor T, Omomoh E, Omiunu R, Agbukor J, Ebo B, Aiyepada J, Ebhodaghe P, Osiemi B, Ehikhametalor S, Akhilomen P, Airende M, Esumeh R, Muoebonam E, Giwa R, Ekanem A, Igenegbale G, Odigie G, Okonofua G, Enigbe R, Oyakhilome J, Yerumoh EO, Odia I, Aire C, Okonofua M, Atafo R, Tobin E, Asogun D, Akpede N, Okokhere PO, Rafiu MO, Iraoyah KO, Iruolagbe CO, Akhideno P, Erameh C, Akpede G, Isibor E, Naidoo D, Hewson R, Hiscox JA, Vipond R, Carroll MW, Ihekweazu C, Formenty P, Okogbenin S, Ogbaini-Emovon E, Günther S, Duraffour S.

Science. 2019 Jan 4;363(6422):74-77. doi: 10.1126/science.aau9343.

5.

Assessment of metagenomic Nanopore and Illumina sequencing for recovering whole genome sequences of chikungunya and dengue viruses directly from clinical samples.

Kafetzopoulou LE, Efthymiadis K, Lewandowski K, Crook A, Carter D, Osborne J, Aarons E, Hewson R, Hiscox JA, Carroll MW, Vipond R, Pullan ST.

Euro Surveill. 2018 Dec;23(50). doi: 10.2807/1560-7917.ES.2018.23.50.1800228.

6.

Closed Genome Sequence Obtained Using Hybrid Nanopore/Illumina Assembly of a Bacillus anthracis Isolate from an Animal-Skin-Drum-Associated Anthrax Case in the United Kingdom.

Pullan ST, Miles RW, Lewandowski K, Vipond R.

Microbiol Resour Announc. 2018 Oct 4;7(13). pii: e00802-18. doi: 10.1128/MRA.00802-18. eCollection 2018 Oct.

7.

Development and Assessment of a Diagnostic DNA Oligonucleotide Microarray for Detection and Typing of Meningitis-Associated Bacterial Species.

Bannister SA, Kidd SP, Kirby E, Shah S, Thomas A, Vipond R, Elmore MJ, Telfer Brunton A, Marsh P, Green S, Silman NJ, Kempsell KE.

High Throughput. 2018 Oct 16;7(4). pii: E32. doi: 10.3390/ht7040032.

8.

Detection of Viral Pathogens With Multiplex Nanopore MinION Sequencing: Be Careful With Cross-Talk.

Xu Y, Lewandowski K, Lumley S, Pullan S, Vipond R, Carroll M, Foster D, Matthews PC, Peto T, Crook D.

Front Microbiol. 2018 Sep 19;9:2225. doi: 10.3389/fmicb.2018.02225. eCollection 2018.

9.

The effect of a non-denaturing detergent and a guanidinium-based inactivation agent on the viability of Ebola virus in mock clinical serum samples.

Burton JE, Easterbrook L, Pitman J, Anderson D, Roddy S, Bailey D, Vipond R, Bruce CB, Roberts AD.

J Virol Methods. 2017 Dec;250:34-40. doi: 10.1016/j.jviromet.2017.09.020. Epub 2017 Sep 20.

PMID:
28941617
10.

Antifreeze Protein Mimetic Metallohelices with Potent Ice Recrystallization Inhibition Activity.

Mitchell DE, Clarkson G, Fox DJ, Vipond RA, Scott P, Gibson MI.

J Am Chem Soc. 2017 Jul 26;139(29):9835-9838. doi: 10.1021/jacs.7b05822. Epub 2017 Jul 18.

11.

The Effect of Nucleic Acid Extraction Platforms and Sample Storage on the Integrity of Viral RNA for Use in Whole Genome Sequencing.

Lewandowski K, Bell A, Miles R, Carne S, Wooldridge D, Manso C, Hennessy N, Bailey D, Pullan ST, Gharbia S, Vipond R.

J Mol Diagn. 2017 Mar;19(2):303-312. doi: 10.1016/j.jmoldx.2016.10.005. Epub 2016 Dec 30.

12.

Correction: Temporal Expression of Peripheral Blood Leukocyte Biomarkers in a Macaca fascicularis Infection Model of Tuberculosis; Comparison with Human Datasets and Analysis with Parametric/Non-parametric Tools for Improved Diagnostic Biomarker Identification.

Javed S, Marsay L, Wareham A, Lewandowski KS, Williams A, Dennis MJ, Sharpe S, Vipond R, Silman N, Ball G, Kempsell KE.

PLoS One. 2016 Jul 18;11(7):e0159783. doi: 10.1371/journal.pone.0159783. eCollection 2016.

13.

Temporal Expression of Peripheral Blood Leukocyte Biomarkers in a Macaca fascicularis Infection Model of Tuberculosis; Comparison with Human Datasets and Analysis with Parametric/Non-parametric Tools for Improved Diagnostic Biomarker Identification.

Javed S, Marsay L, Wareham A, Lewandowski KS, Williams A, Dennis MJ, Sharpe S, Vipond R, Silman N, Ball G, Kempsell KE.

PLoS One. 2016 May 26;11(5):e0154320. doi: 10.1371/journal.pone.0154320. eCollection 2016. Erratum in: PLoS One. 2016;11(7):e0159783.

14.

Whole Genome Analysis of Injectional Anthrax Identifies Two Disease Clusters Spanning More Than 13 Years.

Keim P, Grunow R, Vipond R, Grass G, Hoffmaster A, Birdsell DN, Klee SR, Pullan S, Antwerpen M, Bayer BN, Latham J, Wiggins K, Hepp C, Pearson T, Brooks T, Sahl J, Wagner DM.

EBioMedicine. 2015 Oct 6;2(11):1613-8. doi: 10.1016/j.ebiom.2015.10.004. eCollection 2015 Nov.

15.

Whole-genome sequencing investigation of animal-skin-drum-associated UK anthrax cases reveals evidence of mixed populations and relatedness to a US case.

Pullan ST, Pearson TR, Latham J, Mason J, Atkinson B, Silman NJ, Marston CK, Sahl JW, Birdsell D, Hoffmaster AR, Keim P, Vipond R.

Microb Genom. 2015 Nov 7;1(5):e000039. doi: 10.1099/mgen.0.000039. eCollection 2015 Nov.

16.

Evaluation of the Biofire FilmArray BioThreat-E Test (v2.5) for Rapid Identification of Ebola Virus Disease in Heat-Treated Blood Samples Obtained in Sierra Leone and the United Kingdom.

Weller SA, Bailey D, Matthews S, Lumley S, Sweed A, Ready D, Eltringham G, Richards J, Vipond R, Lukaszewski R, Payne PM, Aarons E, Simpson AJ, Hutley EJ, Brooks T.

J Clin Microbiol. 2016 Jan;54(1):114-9. doi: 10.1128/JCM.02287-15. Epub 2015 Nov 4.

17.

Whole genome protein microarrays for serum profiling of immunodominant antigens of Bacillus anthracis.

Kempsell KE, Kidd SP, Lewandowski K, Elmore MJ, Charlton S, Yeates A, Cuthbertson H, Hallis B, Altmann DM, Rogers M, Wattiau P, Ingram RJ, Brooks T, Vipond R.

Front Microbiol. 2015 Aug 13;6:747. doi: 10.3389/fmicb.2015.00747. eCollection 2015.

18.

Genome sequence analysis of Ebola virus in clinical samples from three British healthcare workers, August 2014 to March 2015.

Bell A, Lewandowski K, Myers R, Wooldridge D, Aarons E, Simpson A, Vipond R, Jacobs M, Gharbia S, Zambon M.

Euro Surveill. 2015 May 21;20(20). pii: 21131. Erratum in: Euro Surveill. 2015;20(21). pii: 21141.

19.

Molecular epidemiologic investigation of an anthrax outbreak among heroin users, Europe.

Price EP, Seymour ML, Sarovich DS, Latham J, Wolken SR, Mason J, Vincent G, Drees KP, Beckstrom-Sternberg SM, Phillippy AM, Koren S, Okinaka RT, Chung WK, Schupp JM, Wagner DM, Vipond R, Foster JT, Bergman NH, Burans J, Pearson T, Brooks T, Keim P.

Emerg Infect Dis. 2012 Aug;18(8):1307-13. doi: 10.3201/eid1808.111343.

20.

Description of a Coxiella burnetii abortion outbreak in a dairy goat herd, and associated serology, PCR and genotyping results.

Reichel R, Mearns R, Brunton L, Jones R, Horigan M, Vipond R, Vincent G, Evans S.

Res Vet Sci. 2012 Dec;93(3):1217-24. doi: 10.1016/j.rvsc.2012.04.007. Epub 2012 May 11.

PMID:
22578355
21.

Interlaboratory comparison of real-time polymerase chain reaction methods to detect Coxiella burnetii, the causative agent of Q fever.

Jones RM, Hertwig S, Pitman J, Vipond R, Aspán A, Bölske G, McCaughey C, McKenna JP, van Rotterdam BJ, de Bruin A, Ruuls R, Buijs R, Roest HJ, Sawyer J.

J Vet Diagn Invest. 2011 Jan;23(1):108-11.

PMID:
21217038
22.

Genome sequencing shows that European isolates of Francisella tularensis subspecies tularensis are almost identical to US laboratory strain Schu S4.

Chaudhuri RR, Ren CP, Desmond L, Vincent GA, Silman NJ, Brehm JK, Elmore MJ, Hudson MJ, Forsman M, Isherwood KE, Gurycová D, Minton NP, Titball RW, Pallen MJ, Vipond R.

PLoS One. 2007 Apr 4;2(4):e352.

23.

Selection of novel TB vaccine candidates and their evaluation as DNA vaccines against aerosol challenge.

Vipond J, Vipond R, Allen-Vercoe E, Clark SO, Hatch GJ, Gooch KE, Bacon J, Hampshire T, Shuttleworth H, Minton NP, Blake K, Williams A, Marsh PD.

Vaccine. 2006 Sep 11;24(37-39):6340-50. Epub 2006 Jun 5.

PMID:
16781800
24.

Proteomic analysis of Neisseria lactamica and N eisseria meningitidis outer membrane vesicle vaccine antigens.

Vaughan TE, Skipp PJ, O'Connor CD, Hudson MJ, Vipond R, Elmore MJ, Gorringe AR.

Vaccine. 2006 Jun 19;24(25):5277-93. Epub 2006 Mar 23.

PMID:
16682101
25.

Re-formulation of selected DNA vaccine candidates and their evaluation as protein vaccines using a guinea pig aerosol infection model of tuberculosis.

Vipond J, Clark SO, Hatch GJ, Vipond R, Marie Agger E, Tree JA, Williams A, Marsh PD.

Tuberculosis (Edinb). 2006 May-Jul;86(3-4):218-24. Epub 2006 Mar 7.

PMID:
16520093
26.

Defined deletion mutants demonstrate that the major secreted toxins are not essential for the virulence of Aeromonas salmonicida.

Vipond R, Bricknell IR, Durant E, Bowden TJ, Ellis AE, Smith M, MacIntyre S.

Infect Immun. 1998 May;66(5):1990-8.

27.

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